Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:22:21 (2824758): wrapper (7.7.26015): starting
03:22:21 (2824758): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 03:22:21] Arguments: --nthreads 3
[2026-01-27 03:22:21] Threads: 3
[2026-01-27 03:22:21] Checking for CVMFS
[2026-01-27 03:22:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 03:22:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 03:22:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 03:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 03:22:21] 2.9.2.0 1146322 9292 90328 155569 3 49 23130779 36864001 0 130560 0 4200101 99.986 299707 6007 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 03:22:21] CVMFS is ok
[2026-01-27 03:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 03:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 03:22:21] Further information can be found at the LHC@home message board.
[2026-01-27 03:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 03:22:21] Checking for apptainer binary...
[2026-01-27 03:22:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 03:22:21] Running /usr/bin/apptainer --version
[2026-01-27 03:22:21] apptainer version 1.4.1-1.1
[2026-01-27 03:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 03:22:22] thA312a
[2026-01-27 03:22:22] apptainer works
[2026-01-27 03:22:22] Set ATHENA_PROC_NUMBER=3
[2026-01-27 03:22:22] Set ATHENA_CORE_NUMBER=3
[2026-01-27 03:22:22] Starting ATLAS job with PandaID=6983772819
[2026-01-27 03:22:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 04:51:45]  *** The last 200 lines of the pilot log: ***
[2026-01-27 04:51:45] 2026-01-27 03:50:38,496 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 04:51:45] 2026-01-27 03:50:38,497 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6983772819/payload.stdout) since it has not been created yet
[2026-01-27 04:51:45] 2026-01-27 03:50:38,497 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:51:45] 2026-01-27 03:50:38,507 | INFO     | sufficient remaining disk space (279294509056 B)
[2026-01-27 04:51:45] 2026-01-27 03:50:38,507 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 04:51:45] 2026-01-27 03:50:38,507 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6983772819/HITS.48318042._001943.pool.root.1 since it does not exist
[2026-01-27 04:51:45] 2026-01-27 03:50:38,558 | INFO     | number of running child processes to parent process 2833251: 1
[2026-01-27 04:51:45] 2026-01-27 03:50:38,558 | INFO     | maximum number of monitored processes: 6
[2026-01-27 04:51:45] 2026-01-27 03:50:38,558 | INFO     | aborting job monitoring since job object (job id=6983772819) has expired
[2026-01-27 04:51:45] 2026-01-27 03:50:39,020 | INFO     | --- collectZombieJob: --- 10, [2833251]
[2026-01-27 04:51:45] 2026-01-27 03:50:39,021 | INFO     | zombie collector waiting for pid 2833251
[2026-01-27 04:51:45] 2026-01-27 03:50:39,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 04:51:45] 2026-01-27 03:50:39,021 | INFO     | collected zombie processes
[2026-01-27 04:51:45] 2026-01-27 03:50:39,021 | INFO     | will attempt to kill all subprocesses of pid=2833251
[2026-01-27 04:51:45] 2026-01-27 03:50:39,070 | INFO     | process IDs to be killed: [2833251] (in reverse order)
[2026-01-27 04:51:45] 2026-01-27 03:50:39,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 04:51:45] 2026-01-27 03:50:39,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 04:51:45] 2026-01-27 03:50:39,101 | INFO     | did not find any defunct processes belonging to 2833251
[2026-01-27 04:51:45] 2026-01-27 03:50:39,102 | INFO     | did not find any defunct processes belonging to 2833251
[2026-01-27 04:51:45] 2026-01-27 03:50:39,102 | INFO     | ready for new job
[2026-01-27 04:51:45] 2026-01-27 03:50:39,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | **************************************
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | **************************************
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | 
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | architecture information:
[2026-01-27 04:51:45] 2026-01-27 03:50:39,103 | INFO     | executing command: cat /etc/os-release
[2026-01-27 04:51:45] 2026-01-27 03:50:39,113 | INFO     | cat /etc/os-release:
[2026-01-27 04:51:45] NAME="CentOS Linux"
[2026-01-27 04:51:45] VERSION="7 (Core)"
[2026-01-27 04:51:45] ID="centos"
[2026-01-27 04:51:45] ID_LIKE="rhel fedora"
[2026-01-27 04:51:45] VERSION_ID="7"
[2026-01-27 04:51:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 04:51:45] ANSI_COLOR="0;31"
[2026-01-27 04:51:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 04:51:45] HOME_URL="https://www.centos.org/"
[2026-01-27 04:51:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 04:51:45] 
[2026-01-27 04:51:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 04:51:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 04:51:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 04:51:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 04:51:45] 
[2026-01-27 04:51:45] 2026-01-27 03:50:39,113 | INFO     | **************************************
[2026-01-27 04:51:45] 2026-01-27 03:50:39,616 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:51:45] 2026-01-27 03:50:39,626 | INFO     | sufficient remaining disk space (279295557632 B)
[2026-01-27 04:51:45] 2026-01-27 03:50:39,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | INFO     | update_server=False
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | INFO     | aborting loop
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 04:51:45] 2026-01-27 03:50:39,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 04:51:45] 2026-01-27 03:50:40,015 | INFO     | all job control threads have been joined
[2026-01-27 04:51:45] 2026-01-27 03:50:40,128 | INFO     | all data control threads have been joined
[2026-01-27 04:51:45] 2026-01-27 03:50:40,388 | INFO     | all payload control threads have been joined
[2026-01-27 04:51:45] 2026-01-27 03:50:40,631 | INFO     | [job] queue monitor thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:40,632 | INFO     | [job] retrieve thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:40,632 | INFO     | [job] job monitor thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,020 | INFO     | [job] control thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,133 | INFO     | [data] control thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,157 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,394 | INFO     | [payload] control thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,485 | INFO     | [payload] validate_post thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,632 | INFO     | [data] copytool_out thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,673 | INFO     | [job] validate thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,718 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,860 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:41,908 | INFO     | [data] copytool_in thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:42,105 | INFO     | [payload] failed_post thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:43,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 04:51:45] 2026-01-27 03:50:47,086 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:50:50,442 | INFO     | job.realtimelogging is not enabled
[2026-01-27 04:51:45] 2026-01-27 03:50:51,447 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 04:51:45] 2026-01-27 03:51:39,126 | INFO     | [monitor] cgroup control has ended
[2026-01-27 04:51:45] 2026-01-27 03:51:40,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799779743552)>', '<ExcThread(monitor, started 139798685669120)>']
[2026-01-27 04:51:45] 2026-01-27 03:51:40,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 04:51:45] 2026-01-27 03:51:40,928 | INFO     | [monitor] control thread has ended
[2026-01-27 04:51:45] 2026-01-27 03:51:45,094 | INFO     | all workflow threads have been joined
[2026-01-27 04:51:45] 2026-01-27 03:51:45,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 04:51:45] 2026-01-27 03:51:45,094 | INFO     | traces error code: 0
[2026-01-27 04:51:45] 2026-01-27 03:51:45,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 04:51:45] 2026-01-27 03:51:45,143 [wrapper] ==== pilot stdout END ====
[2026-01-27 04:51:45] 2026-01-27 03:51:45,146 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 04:51:45] 2026-01-27 03:51:45,149 [wrapper] pilotpid: 2828811
[2026-01-27 04:51:45] 2026-01-27 03:51:45,151 [wrapper] Pilot exit status: 0
[2026-01-27 04:51:45] 2026-01-27 03:51:45,159 [wrapper] pandaids: 6983772819
[2026-01-27 04:51:45] 2026-01-27 03:51:45,180 [wrapper] cleanup supervisor_pilot 2843245 2828812
[2026-01-27 04:51:45] 2026-01-27 03:51:45,182 [wrapper] Test setup, not cleaning
[2026-01-27 04:51:45] 2026-01-27 03:51:45,185 [wrapper] apfmon messages muted
[2026-01-27 04:51:45] 2026-01-27 03:51:45,187 [wrapper] ==== wrapper stdout END ====
[2026-01-27 04:51:45] 2026-01-27 03:51:45,190 [wrapper] ==== wrapper stderr END ====
[2026-01-27 04:51:45]  *** Error codes and diagnostics ***
[2026-01-27 04:51:45]     "exeErrorCode": 0,
[2026-01-27 04:51:45]     "exeErrorDiag": "",
[2026-01-27 04:51:45]     "pilotErrorCode": 0,
[2026-01-27 04:51:45]     "pilotErrorDiag": "",
[2026-01-27 04:51:45]  *** Listing of results directory ***
[2026-01-27 04:51:45] total 682204
[2026-01-27 04:51:45] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc       100 Jan 27 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 04:51:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 03:22 run_atlas
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc       105 Jan 27 03:22 job.xml
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc 504861404 Jan 27 03:22 EVNT.48318040._000039.pool.root.1
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc    597768 Jan 27 03:22 input.tar.gz
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 03:22 start_atlas.sh
[2026-01-27 04:51:45] drwxrwx--x 2 boinc boinc      4096 Jan 27 03:22 shared
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc         0 Jan 27 03:22 boinc_setup_complete
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc      6447 Jan 27 03:22 init_data.xml
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc         0 Jan 27 03:22 boinc_lockfile
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc      2533 Jan 27 03:22 pandaJob.out
[2026-01-27 04:51:45] -rw------- 1 boinc boinc   1006425 Jan 27 03:22 agis_schedconf.cvmfs.json
[2026-01-27 04:51:45] -rw------- 1 boinc boinc   1516246 Jan 27 03:22 agis_ddmendpoints.agis.ALL.json
[2026-01-27 04:51:45] -rw------- 1 boinc boinc       424 Jan 27 03:22 workernode_map.json
[2026-01-27 04:51:45] drwx------ 5 boinc boinc      4096 Jan 27 03:22 pilot3
[2026-01-27 04:51:45] -rw------- 1 boinc boinc        95 Jan 27 04:50 pilot_heartbeat.json
[2026-01-27 04:51:45] -rw------- 1 boinc boinc 187691211 Jan 27 04:50 HITS.48318042._001943.pool.root.1
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc       530 Jan 27 04:50 boinc_task_state.xml
[2026-01-27 04:51:45] -rw------- 1 boinc boinc      1017 Jan 27 04:50 memory_monitor_summary.json
[2026-01-27 04:51:45] -rw------- 1 boinc boinc    275797 Jan 27 04:50 log.48318042._001943.job.log.tgz.1
[2026-01-27 04:51:45] -rw------- 1 boinc boinc      6302 Jan 27 04:50 heartbeat.json
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc      8192 Jan 27 04:51 boinc_mmap_file
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc        27 Jan 27 04:51 wrapper_checkpoint.txt
[2026-01-27 04:51:45] -rw------- 1 boinc boinc      4624 Jan 27 04:51 pilotlog.txt
[2026-01-27 04:51:45] -rw------- 1 boinc boinc    769554 Jan 27 04:51 log.48318042._001943.job.log.1
[2026-01-27 04:51:45] -rw------- 1 boinc boinc       357 Jan 27 04:51 output.list
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:51 runtime_log
[2026-01-27 04:51:45] -rw------- 1 boinc boinc   1064960 Jan 27 04:51 result.tar.gz
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc      8901 Jan 27 04:51 runtime_log.err
[2026-01-27 04:51:45] -rw------- 1 boinc boinc       658 Jan 27 04:51 L1mMDmTIS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYP2KDmCBfsBn.diag
[2026-01-27 04:51:45] -rw-r--r-- 1 boinc boinc     11843 Jan 27 04:51 stderr.txt
[2026-01-27 04:51:45] HITS file was successfully produced:
[2026-01-27 04:51:45] -rw------- 1 boinc boinc 187691211 Jan 27 04:50 shared/HITS.pool.root.1
[2026-01-27 04:51:45]  *** Contents of shared directory: ***
[2026-01-27 04:51:45] total 677976
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc 504861404 Jan 27 03:22 ATLAS.root_0
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc    597768 Jan 27 03:22 input.tar.gz
[2026-01-27 04:51:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 03:22 start_atlas.sh
[2026-01-27 04:51:45] -rw------- 1 boinc boinc 187691211 Jan 27 04:50 HITS.pool.root.1
[2026-01-27 04:51:45] -rw------- 1 boinc boinc   1064960 Jan 27 04:51 result.tar.gz
04:51:46 (2824758): run_atlas exited; CPU time 15241.577107
04:51:46 (2824758): called boinc_finish(0)

</stderr_txt>
]]>

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