Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:14:16 (3422906): wrapper (7.7.26015): starting
11:14:16 (3422906): wrapper: running run_atlas (--nthreads 10)
[2026-01-26 11:14:16] Arguments: --nthreads 10
[2026-01-26 11:14:16] Threads: 10
[2026-01-26 11:14:16] Checking for CVMFS
[2026-01-26 11:14:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:14:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:14:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:14:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:14:17] 2.13.3.0 270452 5616 144384 155551 2 466 35764410 40960000 12804 16776704 0 5136445 99.006 13717353 37889 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 11:14:17] CVMFS is ok
[2026-01-26 11:14:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 11:14:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 11:14:17] Further information can be found at the LHC@home message board.
[2026-01-26 11:14:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:14:17] Checking for apptainer binary...
[2026-01-26 11:14:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 11:14:17] Running /usr/bin/apptainer --version
[2026-01-26 11:14:17] apptainer version 1.4.5-2.el9
[2026-01-26 11:14:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:14:17] c6-6-39-1.aglt2.org
[2026-01-26 11:14:17] apptainer works
[2026-01-26 11:14:17] Set ATHENA_PROC_NUMBER=10
[2026-01-26 11:14:17] Set ATHENA_CORE_NUMBER=10
[2026-01-26 11:14:17] Starting ATLAS job with PandaID=6984043647
[2026-01-26 11:14:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 13:00:53]  *** The last 200 lines of the pilot log: ***
[2026-01-26 13:00:53] 2026-01-26 17:59:54,313 | INFO     | mean x: 1769447240.875
[2026-01-26 13:00:53] 2026-01-26 17:59:54,313 | INFO     | mean y: 2568957.048076923
[2026-01-26 13:00:53] 2026-01-26 17:59:54,313 | INFO     | intersect: -21111115276.763195
[2026-01-26 13:00:53] 2026-01-26 17:59:54,314 | INFO     | chi2: 2.248606810317547
[2026-01-26 13:00:53] 2026-01-26 17:59:54,314 | INFO     | sum of square deviations: 300893651.6565657
[2026-01-26 13:00:53] 2026-01-26 17:59:54,314 | INFO     | sum of deviations: 11062897179.777775
[2026-01-26 13:00:53] 2026-01-26 17:59:54,314 | INFO     | mean x: 1769447088.3232324
[2026-01-26 13:00:53] 2026-01-26 17:59:54,314 | INFO     | mean y: 2590027.4444444445
[2026-01-26 13:00:53] 2026-01-26 17:59:54,315 | INFO     | intersect: -65054319931.95828
[2026-01-26 13:00:53] 2026-01-26 17:59:54,315 | INFO     | chi2: 1.4721629385635877
[2026-01-26 13:00:53] 2026-01-26 17:59:54,315 | INFO     | current chi2=1.4721629385635877 (change=34.52999733841019 %)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,315 | INFO     | sum of square deviations: 257581668.60638332
[2026-01-26 13:00:53] 2026-01-26 17:59:54,315 | INFO     | sum of deviations: 10634470049.606379
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | mean x: 1769446935.8404255
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | mean y: 2588517.840425532
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | intersect: -73050476730.82713
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | chi2: 1.4753845071587548
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | current chi2=1.4753845071587548 (change=-0.21883233919136866 %)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | right removable region: 93
[2026-01-26 13:00:53] 2026-01-26 17:59:54,316 | INFO     | sum of square deviations: 300914033.6363633
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | sum of deviations: -12667835778.333332
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | mean x: 1769447393.3939395
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | mean y: 2621523.4444444445
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | intersect: 74492563807.09903
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | chi2: 0.832103774681389
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | current chi2=0.832103774681389 (change=62.9946964999239 %)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,317 | INFO     | sum of square deviations: 257580395.3191491
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | sum of deviations: -11625961914.829788
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | mean x: 1769447545.9148936
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | mean y: 2617819.0212765955
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | intersect: 79867118972.5617
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | chi2: 0.8330014166932453
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | current chi2=0.8330014166932453 (change=-0.10787620957495195 %)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | left removable region: 20
[2026-01-26 13:00:53] 2026-01-26 17:59:54,318 | INFO     | sum of square deviations: 120633645.83561634
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | sum of deviations: -2271071185.164383
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | mean x: 1769447515.4246576
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | mean y: 2635110.4246575343
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | intersect: 33314579204.509228
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | chi2: 0.012823108290016566
[2026-01-26 13:00:53] 2026-01-26 17:59:54,319 | INFO     | current memory leak: -18.83 B/s (using 73 data points, chi2=0.01)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | could have reported an average CPU frequency of 2953 MHz (7 samples)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | ..............................
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . Timing measurements:
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . get job = 0 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . initial setup = 7 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . payload setup = 6 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . stage-in = 0 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . payload execution = 6292 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . stage-out = 1 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | . log creation = 0 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,320 | INFO     | ..............................
[2026-01-26 13:00:53] 2026-01-26 17:59:54,898 | INFO     | 
[2026-01-26 13:00:53] 2026-01-26 17:59:54,898 | INFO     | job summary report
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | --------------------------------------------------
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | PanDA job id: 6984043647
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | task id: 48317872
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | errors: (none)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | pilot state: finished 
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | transexitcode: 0
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | exeerrorcode: 0
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | exeerrordiag: 
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | exitcode: 0
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | exitmsg: OK
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | cpuconsumptiontime: 39292 s
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | nevents: 400
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | neventsw: 0
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | pid: 3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:54,899 | INFO     | pgrp: 3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | corecount: 10
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | event service: False
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | sizes: {0: 2251823, 1: 2284224, 11: 2284252, 6302: 2311266, 6303: 2311265, 6305: 2320319, 6307: 2320503, 6308: 2320697}
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | --------------------------------------------------
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | 
[2026-01-26 13:00:53] 2026-01-26 17:59:54,900 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,951 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,951 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 13:00:53] 2026-01-26 17:59:54,952 | INFO     | job 6984043647 has completed (purged errors)
[2026-01-26 13:00:53] 2026-01-26 17:59:54,952 | INFO     | overall cleanup function is called
[2026-01-26 13:00:53] 2026-01-26 17:59:55,326 | WARNING  | process 3431417 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 13:00:53] 2026-01-26 17:59:55,960 | INFO     | --- collectZombieJob: --- 10, [3431417]
[2026-01-26 13:00:53] 2026-01-26 17:59:55,960 | INFO     | zombie collector waiting for pid 3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:55,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 13:00:53] 2026-01-26 17:59:55,961 | INFO     | collected zombie processes
[2026-01-26 13:00:53] 2026-01-26 17:59:55,961 | INFO     | will attempt to kill all subprocesses of pid=3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:56,028 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:00:53] 2026-01-26 17:59:56,029 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 13:00:53] 2026-01-26 17:59:56,029 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-26 13:00:53] 2026-01-26 17:59:56,030 | WARNING  | maxPSS not found in memory monitor output
[2026-01-26 13:00:53] 2026-01-26 17:59:56,030 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/2/PanDA_Pilot-6984043647/payload.stdout) since it has not been created yet
[2026-01-26 13:00:53] 2026-01-26 17:59:56,030 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-26 13:00:53] 2026-01-26 17:59:56,092 | INFO     | sufficient remaining disk space (72565653504 B)
[2026-01-26 13:00:53] 2026-01-26 17:59:56,092 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-26 13:00:53] 2026-01-26 17:59:56,092 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6984043647/HITS.48317872._002315.pool.root.1 since it does not exist
[2026-01-26 13:00:53] 2026-01-26 17:59:56,470 | INFO     | process IDs to be killed: [3431417] (in reverse order)
[2026-01-26 13:00:53] 2026-01-26 17:59:56,654 | INFO     | number of running child processes to parent process 3431417: 1
[2026-01-26 13:00:53] 2026-01-26 17:59:56,654 | INFO     | maximum number of monitored processes: 6
[2026-01-26 13:00:53] 2026-01-26 17:59:56,654 | INFO     | aborting job monitoring since job object (job id=6984043647) has expired
[2026-01-26 13:00:53] 2026-01-26 17:59:56,655 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 13:00:53] 2026-01-26 17:59:56,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 13:00:53] 2026-01-26 17:59:56,665 | INFO     | did not find any defunct processes belonging to 3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:56,675 | INFO     | did not find any defunct processes belonging to 3431417
[2026-01-26 13:00:53] 2026-01-26 17:59:56,676 | INFO     | ready for new job
[2026-01-26 13:00:53] 2026-01-26 17:59:56,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 13:00:53] 2026-01-26 17:59:56,677 | INFO     | **************************************
[2026-01-26 13:00:53] 2026-01-26 17:59:56,678 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 13:00:53] 2026-01-26 17:59:56,678 | INFO     | **************************************
[2026-01-26 13:00:53] 2026-01-26 17:59:56,678 | INFO     | 
[2026-01-26 13:00:53] 2026-01-26 17:59:56,681 | INFO     | architecture information:
[2026-01-26 13:00:53] 2026-01-26 17:59:56,681 | INFO     | executing command: cat /etc/os-release
[2026-01-26 13:00:53] 2026-01-26 17:59:56,698 | INFO     | cat /etc/os-release:
[2026-01-26 13:00:53] NAME="CentOS Linux"
[2026-01-26 13:00:53] VERSION="7 (Core)"
[2026-01-26 13:00:53] ID="centos"
[2026-01-26 13:00:53] ID_LIKE="rhel fedora"
[2026-01-26 13:00:53] VERSION_ID="7"
[2026-01-26 13:00:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 13:00:53] ANSI_COLOR="0;31"
[2026-01-26 13:00:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 13:00:53] HOME_URL="https://www.centos.org/"
[2026-01-26 13:00:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 13:00:53] 
[2026-01-26 13:00:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 13:00:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 13:00:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 13:00:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 13:00:53] 
[2026-01-26 13:00:53] 2026-01-26 17:59:56,698 | INFO     | **************************************
[2026-01-26 13:00:53] 2026-01-26 17:59:57,202 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-26 13:00:53] 2026-01-26 17:59:57,221 | INFO     | sufficient remaining disk space (72566702080 B)
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | INFO     | update_server=False
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:00:53] 2026-01-26 17:59:57,222 | INFO     | will abort loop
[2026-01-26 13:00:53] 2026-01-26 17:59:57,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 13:00:53] 2026-01-26 17:59:57,367 | INFO     | all payload control threads have been joined
[2026-01-26 13:00:53] 2026-01-26 17:59:57,370 | INFO     | all job control threads have been joined
[2026-01-26 13:00:53] 2026-01-26 17:59:58,227 | INFO     | [job] retrieve thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,232 | INFO     | [job] job monitor thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,282 | INFO     | all data control threads have been joined
[2026-01-26 13:00:53] 2026-01-26 17:59:58,318 | INFO     | [payload] validate_post thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,373 | INFO     | [payload] control thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,376 | INFO     | [job] control thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,425 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,459 | INFO     | [job] validate thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,727 | INFO     | [payload] failed_post thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,755 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:58,854 | INFO     | [data] copytool_in thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:59,102 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:59,244 | INFO     | [data] copytool_out thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:59,288 | INFO     | [data] control thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:59,419 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 13:00:53] 2026-01-26 17:59:59,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 13:00:53] 2026-01-26 18:00:00,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 13:00:53] 2026-01-26 18:00:00,543 | INFO     | [job] queue monitor thread has finished
[2026-01-26 13:00:53] 2026-01-26 18:00:04,194 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 13:00:53] 2026-01-26 18:00:27,607 | INFO     | PID=3426572 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 13:00:53] 2026-01-26 18:00:27,608 | INFO     | .. there are 10 such processes running
[2026-01-26 13:00:53] 2026-01-26 18:00:27,609 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 13:00:53] 2026-01-26 18:00:27,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 13:00:53] 2026-01-26 18:00:27,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 13:00:53] 2026-01-26 18:00:45,878 | INFO     | [monitor] cgroup control has ended
[2026-01-26 13:00:53] 2026-01-26 18:00:47,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695209051968)>', '<ExcThread(monitor, started 139694666929920)>']
[2026-01-26 13:00:53] 2026-01-26 18:00:47,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 13:00:53] 2026-01-26 18:00:47,732 | INFO     | [monitor] control thread has ended
[2026-01-26 13:00:53] 2026-01-26 18:00:52,285 | INFO     | all workflow threads have been joined
[2026-01-26 13:00:53] 2026-01-26 18:00:52,286 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 13:00:53] 2026-01-26 18:00:52,287 | INFO     | traces error code: 0
[2026-01-26 13:00:53] 2026-01-26 18:00:52,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 13:00:53] 2026-01-26 18:00:52,524 [wrapper] ==== pilot stdout END ====
[2026-01-26 13:00:53] 2026-01-26 18:00:52,527 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 13:00:53] 2026-01-26 18:00:52,532 [wrapper] pilotpid: 3426572
[2026-01-26 13:00:53] 2026-01-26 18:00:52,538 [wrapper] Pilot exit status: 0
[2026-01-26 13:00:53] 2026-01-26 18:00:52,597 [wrapper] pandaids: 6984043647
[2026-01-26 13:00:53] 2026-01-26 18:00:52,819 [wrapper] cleanup supervisor_pilot 3665225 3426573
[2026-01-26 13:00:53] 2026-01-26 18:00:52,823 [wrapper] Test setup, not cleaning
[2026-01-26 13:00:53] 2026-01-26 18:00:52,825 [wrapper] apfmon messages muted
[2026-01-26 13:00:53] 2026-01-26 18:00:52,828 [wrapper] ==== wrapper stdout END ====
[2026-01-26 13:00:53] 2026-01-26 18:00:52,830 [wrapper] ==== wrapper stderr END ====
[2026-01-26 13:00:53]  *** Error codes and diagnostics ***
[2026-01-26 13:00:53]     "exeErrorCode": 0,
[2026-01-26 13:00:53]     "exeErrorDiag": "",
[2026-01-26 13:00:53]     "pilotErrorCode": 0,
[2026-01-26 13:00:53]     "pilotErrorDiag": "",
[2026-01-26 13:00:53]  *** Listing of results directory ***
[2026-01-26 13:00:53] total 671996
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas      5111 Jan 26 00:14 queuedata.json
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-26 13:00:53] -rwx------. 1 boincer umatlas     36322 Jan 26 00:14 runpilot2-wrapper.sh
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas       100 Jan 26 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 13:00:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 11:14 run_atlas
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas       105 Jan 26 11:14 job.xml
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas 492757001 Jan 26 11:14 EVNT.48317869._000047.pool.root.1
[2026-01-26 13:00:53] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 11:14 shared
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas    597744 Jan 26 11:14 input.tar.gz
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 11:14 start_atlas.sh
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas         0 Jan 26 11:14 boinc_lockfile
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas      2510 Jan 26 11:14 pandaJob.out
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas        57 Jan 26 11:14 setup.sh.local
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas   1002189 Jan 26 11:14 agis_schedconf.cvmfs.json
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas   1516246 Jan 26 11:14 agis_ddmendpoints.agis.ALL.json
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas       441 Jan 26 11:14 workernode_map.json
[2026-01-26 13:00:53] drwx------. 5 boincer umatlas      4096 Jan 26 11:14 pilot3
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas      6838 Jan 26 12:54 init_data.xml
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas 188901350 Jan 26 12:59 HITS.48317872._002315.pool.root.1
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas       530 Jan 26 12:59 boinc_task_state.xml
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas      1036 Jan 26 12:59 memory_monitor_summary.json
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas    365441 Jan 26 12:59 log.48317872._002315.job.log.tgz.1
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas      6381 Jan 26 12:59 heartbeat.json
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 13:00 boinc_mmap_file
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas        27 Jan 26 13:00 wrapper_checkpoint.txt
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas        95 Jan 26 13:00 pilot_heartbeat.json
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas      4822 Jan 26 13:00 pilotlog.txt
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas    894891 Jan 26 13:00 log.48317872._002315.job.log.1
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas       357 Jan 26 13:00 output.list
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas       620 Jan 26 13:00 runtime_log
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas   1280000 Jan 26 13:00 result.tar.gz
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas      9348 Jan 26 13:00 runtime_log.err
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas       653 Jan 26 13:00 eMRMDm96T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm158KDmRnpQYo.diag
[2026-01-26 13:00:53] -rw-r--r--. 1 boincer umatlas     21527 Jan 26 13:00 stderr.txt
[2026-01-26 13:00:53] HITS file was successfully produced:
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas 188901350 Jan 26 12:59 shared/HITS.pool.root.1
[2026-01-26 13:00:53]  *** Contents of shared directory: ***
[2026-01-26 13:00:53] total 667544
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas 492757001 Jan 26 11:14 ATLAS.root_0
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas    597744 Jan 26 11:14 input.tar.gz
[2026-01-26 13:00:53] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 11:14 start_atlas.sh
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas 188901350 Jan 26 12:59 HITS.pool.root.1
[2026-01-26 13:00:53] -rw-------. 1 boincer umatlas   1280000 Jan 26 13:00 result.tar.gz
13:00:55 (3422906): run_atlas exited; CPU time 39441.246061
13:00:55 (3422906): called boinc_finish(0)

</stderr_txt>
]]>

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