Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:26:29 (8437): wrapper (7.7.26015): starting
18:26:29 (8437): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 18:26:29] Arguments: --nthreads 8
[2026-01-26 18:26:29] Threads: 8
[2026-01-26 18:26:29] Checking for CVMFS
[2026-01-26 18:26:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:26:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:26:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:26:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:26:29] 2.11.0.0 4536 76828 64472 155555 1 50 3140929 4096001 917 130560 1 1974978 99.229 3908916 405 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-26 18:26:29] CVMFS is ok
[2026-01-26 18:26:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:26:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:26:29] Further information can be found at the LHC@home message board.
[2026-01-26 18:26:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:26:29] Checking for apptainer binary...
[2026-01-26 18:26:29] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-26 18:26:29] apptainer is not installed, using version from CVMFS
[2026-01-26 18:26:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:26:30] WARNING: Environment variable TMPDIR already has value [/tmp/job_11051173/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node171
[2026-01-26 18:26:30] apptainer works
[2026-01-26 18:26:30] Set ATHENA_PROC_NUMBER=8
[2026-01-26 18:26:30] Set ATHENA_CORE_NUMBER=8
[2026-01-26 18:26:30] Starting ATLAS job with PandaID=6976894479
[2026-01-26 18:26:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11051173/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:09:55]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:09:55]  is_altstaged=None
[2026-01-26 19:09:55]  is_tar=False
[2026-01-26 19:09:55]  lfn=log.48301086._000400.job.log.tgz.1
[2026-01-26 19:09:55]  mtime=0
[2026-01-26 19:09:55]  protocol_id=None
[2026-01-26 19:09:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 19:09:55]  replicas=None
[2026-01-26 19:09:55]  scope=mc23_13p6TeV
[2026-01-26 19:09:55]  status=None
[2026-01-26 19:09:55]  status_code=0
[2026-01-26 19:09:55]  storage_token=
[2026-01-26 19:09:55]  surl=/tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/log.48301086._000400.job.log.tgz.1
[2026-01-26 19:09:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/88/log.48301086._000400.job.log.tgz.1
[2026-01-26 19:09:55]  workdir=None
[2026-01-26 19:09:55] ]
[2026-01-26 19:09:55] 2026-01-26 18:09:20,590 | INFO     | transferring file log.48301086._000400.job.log.tgz.1 from /tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/log.48301086._000400.job.log.tgz.1 to /tmp/j
[2026-01-26 19:09:55] 2026-01-26 18:09:20,590 | INFO     | executing command: /usr/bin/env mv /tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/log.48301086._000400.job.log.tgz.1 /tmp/job_11051173/atlas/pilot/sl
[2026-01-26 19:09:55] 2026-01-26 18:09:20,598 | INFO     | adding to output.list: log.48301086._000400.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/88/log.48301086._000400.job.log.tg
[2026-01-26 19:09:55] 2026-01-26 18:09:20,599 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 19:09:55] 2026-01-26 18:09:20,599 | INFO     | summary of transferred files:
[2026-01-26 19:09:55] 2026-01-26 18:09:20,599 | INFO     |  -- lfn=log.48301086._000400.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 19:09:55] 2026-01-26 18:09:20,599 | INFO     | stage-out finished correctly
[2026-01-26 19:09:55] 2026-01-26 18:09:21,159 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 19:09:55] 2026-01-26 18:09:21,543 | INFO     | time since job start (2563s) is within the limit (349056.0s)
[2026-01-26 19:09:55] 2026-01-26 18:09:21,544 | WARNING  | process 16939 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 19:09:55] 2026-01-26 18:09:21,544 | INFO     | using path: /tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:09:55] 2026-01-26 18:09:21,644 | INFO     | number of running child processes to parent process 16939: 1
[2026-01-26 19:09:55] 2026-01-26 18:09:21,644 | INFO     | maximum number of monitored processes: 6
[2026-01-26 19:09:55] 2026-01-26 18:09:22,675 | INFO     | PID=12420 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 19:09:55] 2026-01-26 18:09:22,675 | INFO     | .. there are 5 such processes running
[2026-01-26 19:09:55] 2026-01-26 18:09:23,001 | INFO     | job 6976894479 has state=finished
[2026-01-26 19:09:55] 2026-01-26 18:09:23,001 | INFO     | preparing for final server update for job 6976894479 in state='finished'
[2026-01-26 19:09:55] 2026-01-26 18:09:23,001 | INFO     | reading metadata from: /tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/jobReport.json
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | added worker_node to metadata from /tmp/job_11051173/atlas/pilot/slots/0/workernode_map.json
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | job 6976894479 has finished - writing final server update
[2026-01-26 19:09:55] 2026-01-26 18:09:23,003 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,020 | INFO     | using path: /tmp/job_11051173/atlas/pilot/slots/0/PanDA_Pilot-6976894479/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | INFO     | extracted standard info from prmon json
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:09:55] 2026-01-26 18:09:23,021 | INFO     | sum of square deviations: 13283970.0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | sum of deviations: -76709879.0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | mean x: 1769449756.0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | mean y: 2640515.4571428574
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | intersect: 10220540486.575682
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | chi2: 0.0006387905629521913
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | current memory leak: -5.77 B/s (using 35 data points, chi2=0.00)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | could have reported an average CPU frequency of 2486 MHz (5 samples)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | ..............................
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . Timing measurements:
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . get job = 0 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . initial setup = 3 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . payload setup = 2 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . stage-in = 0 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . payload execution = 2543 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . stage-out = 0 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | . log creation = 0 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,022 | INFO     | ..............................
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | 
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | job summary report
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | --------------------------------------------------
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | PanDA job id: 6976894479
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | task id: 48301086
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | errors: (none)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | pilot state: finished 
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | transexitcode: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | exeerrorcode: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | exeerrordiag: 
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | exitcode: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | exitmsg: OK
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | cpuconsumptiontime: 18389 s
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | nevents: 400
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | neventsw: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | pid: 16939
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | pgrp: 16939
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | corecount: 8
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | event service: False
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | sizes: {0: 2283144, 1: 2284388, 11: 2284388, 2550: 2309675, 2551: 2318703, 2552: 2318759, 2554: 2319113}
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | --------------------------------------------------
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | 
[2026-01-26 19:09:55] 2026-01-26 18:09:23,070 | INFO     | executing command: ls -lF /tmp/job_11051173/atlas/pilot/slots/0
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | job 6976894479 has completed (purged errors)
[2026-01-26 19:09:55] 2026-01-26 18:09:23,081 | INFO     | overall cleanup function is called
[2026-01-26 19:09:55] 2026-01-26 18:09:24,086 | INFO     | --- collectZombieJob: --- 10, [16939]
[2026-01-26 19:09:55] 2026-01-26 18:09:24,086 | INFO     | zombie collector waiting for pid 16939
[2026-01-26 19:09:55] 2026-01-26 18:09:24,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:09:55] 2026-01-26 18:09:24,086 | INFO     | collected zombie processes
[2026-01-26 19:09:55] 2026-01-26 18:09:24,086 | INFO     | will attempt to kill all subprocesses of pid=16939
[2026-01-26 19:09:55] 2026-01-26 18:09:24,191 | INFO     | process IDs to be killed: [16939] (in reverse order)
[2026-01-26 19:09:55] 2026-01-26 18:09:24,229 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:09:55] 2026-01-26 18:09:24,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:09:55] 2026-01-26 18:09:24,233 | INFO     | did not find any defunct processes belonging to 16939
[2026-01-26 19:09:55] 2026-01-26 18:09:24,236 | INFO     | did not find any defunct processes belonging to 16939
[2026-01-26 19:09:55] 2026-01-26 18:09:24,236 | INFO     | ready for new job
[2026-01-26 19:09:55] 2026-01-26 18:09:24,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:09:55] 2026-01-26 18:09:24,237 | INFO     | **************************************
[2026-01-26 19:09:55] 2026-01-26 18:09:24,237 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:09:55] 2026-01-26 18:09:24,237 | INFO     | **************************************
[2026-01-26 19:09:55] 2026-01-26 18:09:24,237 | INFO     | 
[2026-01-26 19:09:55] 2026-01-26 18:09:24,251 | INFO     | architecture information:
[2026-01-26 19:09:55] 2026-01-26 18:09:24,251 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:09:55] 2026-01-26 18:09:24,257 | INFO     | cat /etc/os-release:
[2026-01-26 19:09:55] NAME="CentOS Linux"
[2026-01-26 19:09:55] VERSION="7 (Core)"
[2026-01-26 19:09:55] ID="centos"
[2026-01-26 19:09:55] ID_LIKE="rhel fedora"
[2026-01-26 19:09:55] VERSION_ID="7"
[2026-01-26 19:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:09:55] ANSI_COLOR="0;31"
[2026-01-26 19:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:09:55] HOME_URL="https://www.centos.org/"
[2026-01-26 19:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:09:55] 
[2026-01-26 19:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:09:55] 
[2026-01-26 19:09:55] 2026-01-26 18:09:24,257 | INFO     | **************************************
[2026-01-26 19:09:55] 2026-01-26 18:09:24,760 | INFO     | executing command: df -mP /tmp/job_11051173/atlas/pilot/slots/0
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | INFO     | sufficient remaining disk space (219687157760 B)
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | INFO     | update_server=False
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:09:55] 2026-01-26 18:09:24,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:09:55] 2026-01-26 18:09:24,800 | INFO     | all payload control threads have been joined
[2026-01-26 19:09:55] 2026-01-26 18:09:25,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:09:55] 2026-01-26 18:09:25,151 | INFO     | aborting loop
[2026-01-26 19:09:55] 2026-01-26 18:09:25,450 | INFO     | all data control threads have been joined
[2026-01-26 19:09:55] 2026-01-26 18:09:25,771 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:25,772 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:25,805 | INFO     | [payload] control thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:25,893 | INFO     | job.realtimelogging is not enabled
[2026-01-26 19:09:55] 2026-01-26 18:09:26,130 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,131 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,156 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:09:55] 2026-01-26 18:09:26,158 | INFO     | all job control threads have been joined
[2026-01-26 19:09:55] 2026-01-26 18:09:26,209 | INFO     | [job] validate thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,394 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,439 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,455 | INFO     | [data] control thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,545 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,776 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:26,898 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:27,163 | INFO     | [job] control thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:27,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:09:55] 2026-01-26 18:09:28,163 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:31,215 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:09:55] 2026-01-26 18:09:42,282 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:09:55] 2026-01-26 18:09:43,131 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058980096)>']
[2026-01-26 19:09:55] 2026-01-26 18:09:48,156 | INFO     | all workflow threads have been joined
[2026-01-26 19:09:55] 2026-01-26 18:09:48,156 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:09:55] 2026-01-26 18:09:48,156 | INFO     | traces error code: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:48,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:09:55] 2026-01-26 18:09:54,863 | INFO     | PID=12420 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | INFO     | .. there are 5 such processes running
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:09:55] 2026-01-26 18:09:54,864 | INFO     | [monitor] control thread has ended
[2026-01-26 19:09:55] 2026-01-26 18:09:54,916 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:09:55] 2026-01-26 18:09:54,917 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:09:55] 2026-01-26 18:09:54,918 [wrapper] pilotpid: 12420
[2026-01-26 19:09:55] 2026-01-26 18:09:54,919 [wrapper] Pilot exit status: 0
[2026-01-26 19:09:55] 2026-01-26 18:09:54,924 [wrapper] pandaids: 6976894479
[2026-01-26 19:09:55] 2026-01-26 18:09:54,947 [wrapper] cleanup supervisor_pilot  3308 12421
[2026-01-26 19:09:55] 2026-01-26 18:09:54,949 [wrapper] Test setup, not cleaning
[2026-01-26 19:09:55] 2026-01-26 18:09:54,950 [wrapper] apfmon messages muted
[2026-01-26 19:09:55] 2026-01-26 18:09:54,951 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:09:55] 2026-01-26 18:09:54,952 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:09:55]  *** Error codes and diagnostics ***
[2026-01-26 19:09:55]     "exeErrorCode": 0,
[2026-01-26 19:09:55]     "exeErrorDiag": "",
[2026-01-26 19:09:55]     "pilotErrorCode": 0,
[2026-01-26 19:09:55]     "pilotErrorDiag": "",
[2026-01-26 19:09:55]  *** Listing of results directory ***
[2026-01-26 19:09:55] total 656608
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user    584422 Jan 20 22:34 pilot3.tar.gz
[2026-01-26 19:09:55] -rwx------ 1 mf493845 unix-user     36322 Jan 20 22:38 runpilot2-wrapper.sh
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      5111 Jan 20 22:43 queuedata.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       100 Jan 26 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:09:55] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 26 16:22 run_atlas
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       105 Jan 26 16:22 job.xml
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user 487750952 Jan 26 18:26 EVNT.48301084._000008.pool.root.1
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:26 start_atlas.sh
[2026-01-26 19:09:55] drwxrwx--x 2 mf493845 unix-user       100 Jan 26 18:26 shared
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user    597751 Jan 26 18:26 input.tar.gz
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      6391 Jan 26 18:26 init_data.xml
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user         0 Jan 26 18:26 boinc_setup_complete
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      8192 Jan 26 18:26 boinc_mmap_file
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user         0 Jan 26 18:26 boinc_lockfile
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      2518 Jan 26 18:26 pandaJob.out
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user   1006384 Jan 26 18:26 agis_schedconf.cvmfs.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user   1516246 Jan 26 18:26 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       415 Jan 26 18:26 workernode_map.json
[2026-01-26 19:09:55] drwx------ 5 mf493845 unix-user       440 Jan 26 18:26 pilot3
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user 179206987 Jan 26 19:08 HITS.48301086._000400.pool.root.1
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user        95 Jan 26 19:09 pilot_heartbeat.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      1019 Jan 26 19:09 memory_monitor_summary.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user    335432 Jan 26 19:09 log.48301086._000400.job.log.tgz.1
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      6306 Jan 26 19:09 heartbeat.json
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       820 Jan 26 19:09 pilotlog.txt
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user    414199 Jan 26 19:09 log.48301086._000400.job.log.1
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       357 Jan 26 19:09 output.list
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       620 Jan 26 19:09 runtime_log
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user    768000 Jan 26 19:09 result.tar.gz
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user      9219 Jan 26 19:09 runtime_log.err
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user       643 Jan 26 19:09 IZbMDmsbY28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms6wKDmcvZpUo.diag
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user     22074 Jan 26 19:09 stderr.txt
[2026-01-26 19:09:55] HITS file was successfully produced:
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user 179206987 Jan 26 19:08 shared/HITS.pool.root.1
[2026-01-26 19:09:55]  *** Contents of shared directory: ***
[2026-01-26 19:09:55] total 652680
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user 487750952 Jan 26 18:26 ATLAS.root_0
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:26 start_atlas.sh
[2026-01-26 19:09:55] -rw-r--r-- 2 mf493845 unix-user    597751 Jan 26 18:26 input.tar.gz
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user 179206987 Jan 26 19:08 HITS.pool.root.1
[2026-01-26 19:09:55] -rw------- 1 mf493845 unix-user    768000 Jan 26 19:09 result.tar.gz
19:09:56 (8437): run_atlas exited; CPU time 18421.497310
19:09:56 (8437): called boinc_finish(0)

</stderr_txt>
]]>

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