Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:23:50 (22959): wrapper (7.7.26015): starting
18:23:50 (22959): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 18:23:50] Arguments: --nthreads 8
[2026-01-26 18:23:50] Threads: 8
[2026-01-26 18:23:50] Checking for CVMFS
[2026-01-26 18:23:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:23:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:23:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:23:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:23:50] 2.11.0.0 7902 153794 102372 155555 1 188 3795628 4096000 4512 130560 3 7794784 99.293 10393068 496 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-26 18:23:50] CVMFS is ok
[2026-01-26 18:23:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:23:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:23:50] Further information can be found at the LHC@home message board.
[2026-01-26 18:23:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:23:50] Checking for apptainer binary...
[2026-01-26 18:23:50] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-26 18:23:50] apptainer is not installed, using version from CVMFS
[2026-01-26 18:23:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:23:50] WARNING: Environment variable TMPDIR already has value [/tmp/job_11051166/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node093
[2026-01-26 18:23:50] apptainer works
[2026-01-26 18:23:50] Set ATHENA_PROC_NUMBER=8
[2026-01-26 18:23:50] Set ATHENA_CORE_NUMBER=8
[2026-01-26 18:23:50] Starting ATLAS job with PandaID=6983771464
[2026-01-26 18:23:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11051166/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:06:14]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:06:14]  surl=/tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/log.48310670._010678.job.log.tgz.1
[2026-01-26 19:06:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/6f/log.48310670._010678.job.log.tgz.1
[2026-01-26 19:06:14]  workdir=None
[2026-01-26 19:06:14] ]
[2026-01-26 19:06:14] 2026-01-26 18:05:38,403 | INFO     | transferring file log.48310670._010678.job.log.tgz.1 from /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/log.48310670._010678.job.log.tgz.1 to /tmp/j
[2026-01-26 19:06:14] 2026-01-26 18:05:38,403 | INFO     | executing command: /usr/bin/env mv /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/log.48310670._010678.job.log.tgz.1 /tmp/job_11051166/atlas/pilot/sl
[2026-01-26 19:06:14] 2026-01-26 18:05:38,412 | INFO     | adding to output.list: log.48310670._010678.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/6f/log.48310670._010678.job.log.tg
[2026-01-26 19:06:14] 2026-01-26 18:05:38,413 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 19:06:14] 2026-01-26 18:05:38,413 | INFO     | summary of transferred files:
[2026-01-26 19:06:14] 2026-01-26 18:05:38,413 | INFO     |  -- lfn=log.48310670._010678.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 19:06:14] 2026-01-26 18:05:38,413 | INFO     | stage-out finished correctly
[2026-01-26 19:06:14] 2026-01-26 18:05:38,697 | WARNING  | process 31644 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 19:06:14] 2026-01-26 18:05:38,697 | INFO     | using path: /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | INFO     | using path: /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | WARNING  | maxPSS not found in memory monitor output
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3455914 B
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15618 B
[2026-01-26 19:06:14] 2026-01-26 18:05:38,698 | INFO     | executing command: df -mP /tmp/job_11051166/atlas/pilot/slots/0
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | sufficient remaining disk space (220452618240 B)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | size of work directory /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464: 3745856 B (within 5033164800 B limit)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | pfn file=/tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/HITS.48310670._010678.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | total size of present files: 0 B (workdir size: 3745856 B)
[2026-01-26 19:06:14] 2026-01-26 18:05:38,705 | INFO     | output file size check: skipping output file /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/HITS.48310670._010678.pool.root.1 since it does not exist
[2026-01-26 19:06:14] 2026-01-26 18:05:38,810 | INFO     | number of running child processes to parent process 31644: 1
[2026-01-26 19:06:14] 2026-01-26 18:05:38,810 | INFO     | maximum number of monitored processes: 6
[2026-01-26 19:06:14] 2026-01-26 18:05:38,951 | INFO     | time since job start (2502s) is within the limit (349056.0s)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,409 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 19:06:14] 2026-01-26 18:05:40,902 | INFO     | job 6983771464 has state=finished
[2026-01-26 19:06:14] 2026-01-26 18:05:40,902 | INFO     | preparing for final server update for job 6983771464 in state='finished'
[2026-01-26 19:06:14] 2026-01-26 18:05:40,902 | INFO     | reading metadata from: /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/jobReport.json
[2026-01-26 19:06:14] 2026-01-26 18:05:40,903 | INFO     | added worker_node to metadata from /tmp/job_11051166/atlas/pilot/slots/0/workernode_map.json
[2026-01-26 19:06:14] 2026-01-26 18:05:40,903 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,903 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,903 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:06:14] 2026-01-26 18:05:40,903 | INFO     | job 6983771464 has finished - writing final server update
[2026-01-26 19:06:14] 2026-01-26 18:05:40,904 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,921 | INFO     | using path: /tmp/job_11051166/atlas/pilot/slots/0/PanDA_Pilot-6983771464/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,921 | INFO     | extracted standard info from prmon json
[2026-01-26 19:06:14] 2026-01-26 18:05:40,921 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:06:14] 2026-01-26 18:05:40,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | sum of square deviations: 12176972.5
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | sum of deviations: 197758095.99999994
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | mean x: 1769449563.5
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | mean y: 2614533.588235294
[2026-01-26 19:06:14] 2026-01-26 18:05:40,922 | INFO     | intersect: -28733836718.62499
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | chi2: 0.00019513061081924014
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | current memory leak: 16.24 B/s (using 34 data points, chi2=0.00)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | could have reported an average CPU frequency of 2770 MHz (5 samples)
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | ..............................
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . Timing measurements:
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . get job = 0 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . initial setup = 2 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . payload setup = 2 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . stage-in = 0 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . payload execution = 2485 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . stage-out = 0 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | . log creation = 0 s
[2026-01-26 19:06:14] 2026-01-26 18:05:40,923 | INFO     | ..............................
[2026-01-26 19:06:14] 2026-01-26 18:05:40,962 | INFO     | time since job start (2504s) is within the limit (349056.0s)
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | 
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | job summary report
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | --------------------------------------------------
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | PanDA job id: 6983771464
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | task id: 48310670
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | errors: (none)
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | pilot state: finished 
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | transexitcode: 0
[2026-01-26 19:06:14] 2026-01-26 18:05:41,434 | INFO     | exeerrorcode: 0
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | exeerrordiag: 
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | exitcode: 0
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | exitmsg: OK
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | cpuconsumptiontime: 17979 s
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | nevents: 400
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | neventsw: 0
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | pid: 31644
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | pgrp: 31644
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | corecount: 8
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | event service: False
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | sizes: {0: 2283099, 1: 2284343, 11: 2284343, 2491: 2318660, 2493: 2318688, 2494: 2318914}
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | --------------------------------------------------
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | 
[2026-01-26 19:06:14] 2026-01-26 18:05:41,435 | INFO     | executing command: ls -lF /tmp/job_11051166/atlas/pilot/slots/0
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:06:14] 2026-01-26 18:05:41,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:06:14] 2026-01-26 18:05:41,445 | INFO     | job 6983771464 has completed (purged errors)
[2026-01-26 19:06:14] 2026-01-26 18:05:41,445 | INFO     | overall cleanup function is called
[2026-01-26 19:06:14] 2026-01-26 18:05:42,451 | INFO     | --- collectZombieJob: --- 10, [31644]
[2026-01-26 19:06:14] 2026-01-26 18:05:42,451 | INFO     | zombie collector waiting for pid 31644
[2026-01-26 19:06:14] 2026-01-26 18:05:42,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:06:14] 2026-01-26 18:05:42,451 | INFO     | collected zombie processes
[2026-01-26 19:06:14] 2026-01-26 18:05:42,451 | INFO     | will attempt to kill all subprocesses of pid=31644
[2026-01-26 19:06:14] 2026-01-26 18:05:42,556 | INFO     | process IDs to be killed: [31644] (in reverse order)
[2026-01-26 19:06:14] 2026-01-26 18:05:42,594 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:06:14] 2026-01-26 18:05:42,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:06:14] 2026-01-26 18:05:42,599 | INFO     | did not find any defunct processes belonging to 31644
[2026-01-26 19:06:14] 2026-01-26 18:05:42,602 | INFO     | did not find any defunct processes belonging to 31644
[2026-01-26 19:06:14] 2026-01-26 18:05:42,602 | INFO     | ready for new job
[2026-01-26 19:06:14] 2026-01-26 18:05:42,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:06:14] 2026-01-26 18:05:42,603 | INFO     | **************************************
[2026-01-26 19:06:14] 2026-01-26 18:05:42,603 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:06:14] 2026-01-26 18:05:42,603 | INFO     | **************************************
[2026-01-26 19:06:14] 2026-01-26 18:05:42,603 | INFO     | 
[2026-01-26 19:06:14] 2026-01-26 18:05:42,617 | INFO     | architecture information:
[2026-01-26 19:06:14] 2026-01-26 18:05:42,617 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:06:14] 2026-01-26 18:05:42,623 | INFO     | cat /etc/os-release:
[2026-01-26 19:06:14] NAME="CentOS Linux"
[2026-01-26 19:06:14] VERSION="7 (Core)"
[2026-01-26 19:06:14] ID="centos"
[2026-01-26 19:06:14] ID_LIKE="rhel fedora"
[2026-01-26 19:06:14] VERSION_ID="7"
[2026-01-26 19:06:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:06:14] ANSI_COLOR="0;31"
[2026-01-26 19:06:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:06:14] HOME_URL="https://www.centos.org/"
[2026-01-26 19:06:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:06:14] 
[2026-01-26 19:06:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:06:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:06:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:06:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:06:14] 
[2026-01-26 19:06:14] 2026-01-26 18:05:42,623 | INFO     | **************************************
[2026-01-26 19:06:14] 2026-01-26 18:05:43,126 | INFO     | executing command: df -mP /tmp/job_11051166/atlas/pilot/slots/0
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | INFO     | sufficient remaining disk space (220455763968 B)
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | INFO     | update_server=False
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:06:14] 2026-01-26 18:05:43,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:06:14] 2026-01-26 18:05:43,132 | INFO     | aborting loop
[2026-01-26 19:06:14] 2026-01-26 18:05:43,823 | INFO     | all payload control threads have been joined
[2026-01-26 19:06:14] 2026-01-26 18:05:43,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:06:14] 2026-01-26 18:05:44,013 | INFO     | all job control threads have been joined
[2026-01-26 19:06:14] 2026-01-26 18:05:44,137 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:44,137 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:44,206 | INFO     | all data control threads have been joined
[2026-01-26 19:06:14] 2026-01-26 18:05:44,213 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:44,222 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:44,828 | INFO     | [payload] control thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:44,865 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,007 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,018 | INFO     | [job] control thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,211 | INFO     | [data] control thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,386 | INFO     | [job] validate thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,472 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,477 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,977 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:45,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:06:14] 2026-01-26 18:05:46,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:06:14] 2026-01-26 18:05:46,985 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:50,465 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:05:53,181 | INFO     | job.realtimelogging is not enabled
[2026-01-26 19:06:14] 2026-01-26 18:05:54,181 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:06:14] 2026-01-26 18:06:00,197 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:06:14] 2026-01-26 18:06:00,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063182592)>']
[2026-01-26 19:06:14] 2026-01-26 18:06:05,659 | INFO     | all workflow threads have been joined
[2026-01-26 19:06:14] 2026-01-26 18:06:05,659 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:06:14] 2026-01-26 18:06:05,660 | INFO     | traces error code: 0
[2026-01-26 19:06:14] 2026-01-26 18:06:05,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:06:14] 2026-01-26 18:06:14,161 | INFO     | PID=26792 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 19:06:14] 2026-01-26 18:06:14,161 | INFO     | .. there are 5 such processes running
[2026-01-26 19:06:14] 2026-01-26 18:06:14,161 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:06:14] 2026-01-26 18:06:14,161 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:06:14] 2026-01-26 18:06:14,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:06:14] 2026-01-26 18:06:14,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:06:14] 2026-01-26 18:06:14,162 | INFO     | [monitor] control thread has ended
[2026-01-26 19:06:14] 2026-01-26 18:06:14,213 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:06:14] 2026-01-26 18:06:14,214 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:06:14] 2026-01-26 18:06:14,215 [wrapper] pilotpid: 26792
[2026-01-26 19:06:14] 2026-01-26 18:06:14,216 [wrapper] Pilot exit status: 0
[2026-01-26 19:06:14] 2026-01-26 18:06:14,220 [wrapper] pandaids: 6983771464
[2026-01-26 19:06:14] 2026-01-26 18:06:14,244 [wrapper] cleanup supervisor_pilot 24251 26793
[2026-01-26 19:06:14] 2026-01-26 18:06:14,245 [wrapper] Test setup, not cleaning
[2026-01-26 19:06:14] 2026-01-26 18:06:14,246 [wrapper] apfmon messages muted
[2026-01-26 19:06:14] 2026-01-26 18:06:14,247 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:06:14] 2026-01-26 18:06:14,248 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:06:14]  *** Error codes and diagnostics ***
[2026-01-26 19:06:14]     "exeErrorCode": 0,
[2026-01-26 19:06:14]     "exeErrorDiag": "",
[2026-01-26 19:06:14]     "pilotErrorCode": 0,
[2026-01-26 19:06:14]     "pilotErrorDiag": "",
[2026-01-26 19:06:14]  *** Listing of results directory ***
[2026-01-26 19:06:14] total 654868
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      5111 Jan 26 02:12 queuedata.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-26 19:06:14] -rwx------ 1 mf493845 unix-user     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       100 Jan 26 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:06:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 26 16:18 run_atlas
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       105 Jan 26 16:18 job.xml
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user    597763 Jan 26 18:23 input.tar.gz
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user 491587944 Jan 26 18:23 EVNT.48310665._000160.pool.root.1
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:23 start_atlas.sh
[2026-01-26 19:06:14] drwxrwx--x 2 mf493845 unix-user       100 Jan 26 18:23 shared
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      6390 Jan 26 18:23 init_data.xml
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user         0 Jan 26 18:23 boinc_setup_complete
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      8192 Jan 26 18:23 boinc_mmap_file
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user         0 Jan 26 18:23 boinc_lockfile
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      2521 Jan 26 18:23 pandaJob.out
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user   1006384 Jan 26 18:23 agis_schedconf.cvmfs.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user   1516246 Jan 26 18:23 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       420 Jan 26 18:23 workernode_map.json
[2026-01-26 19:06:14] drwx------ 5 mf493845 unix-user       440 Jan 26 18:23 pilot3
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user 173672291 Jan 26 19:05 HITS.48310670._010678.pool.root.1
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user        95 Jan 26 19:05 pilot_heartbeat.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      1012 Jan 26 19:05 memory_monitor_summary.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user    297549 Jan 26 19:05 log.48310670._010678.job.log.tgz.1
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      6300 Jan 26 19:05 heartbeat.json
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       820 Jan 26 19:06 pilotlog.txt
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user    407550 Jan 26 19:06 log.48310670._010678.job.log.1
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       357 Jan 26 19:06 output.list
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       620 Jan 26 19:06 runtime_log
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user    727040 Jan 26 19:06 result.tar.gz
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user      9219 Jan 26 19:06 runtime_log.err
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user       636 Jan 26 19:06 mkQLDmIKQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm361KDmmQ6Vlm.diag
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user     23154 Jan 26 19:06 stderr.txt
[2026-01-26 19:06:14] HITS file was successfully produced:
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user 173672291 Jan 26 19:05 shared/HITS.pool.root.1
[2026-01-26 19:06:14]  *** Contents of shared directory: ***
[2026-01-26 19:06:14] total 650984
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user    597763 Jan 26 18:23 input.tar.gz
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user 491587944 Jan 26 18:23 ATLAS.root_0
[2026-01-26 19:06:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:23 start_atlas.sh
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user 173672291 Jan 26 19:05 HITS.pool.root.1
[2026-01-26 19:06:14] -rw------- 1 mf493845 unix-user    727040 Jan 26 19:06 result.tar.gz
19:06:16 (22959): run_atlas exited; CPU time 18017.325252
19:06:16 (22959): called boinc_finish(0)

</stderr_txt>
]]>

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