Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:29:23 (29390): wrapper (7.7.26015): starting
18:29:23 (29390): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 18:29:23] Arguments: --nthreads 8
[2026-01-26 18:29:23] Threads: 8
[2026-01-26 18:29:23] Checking for CVMFS
[2026-01-26 18:29:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:29:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:29:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:29:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:29:23] 2.11.0.0 4270 153632 85412 155555 0 11 3122723 4096000 1834 130560 16 14530301 99.578 12192974 612 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-26 18:29:23] CVMFS is ok
[2026-01-26 18:29:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:29:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:29:23] Further information can be found at the LHC@home message board.
[2026-01-26 18:29:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:29:23] Checking for apptainer binary...
[2026-01-26 18:29:23] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-26 18:29:23] apptainer is not installed, using version from CVMFS
[2026-01-26 18:29:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:29:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_11051186/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node288
[2026-01-26 18:29:23] apptainer works
[2026-01-26 18:29:24] Set ATHENA_PROC_NUMBER=8
[2026-01-26 18:29:24] Set ATHENA_CORE_NUMBER=8
[2026-01-26 18:29:24] Starting ATLAS job with PandaID=6983345107
[2026-01-26 18:29:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11051186/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:18:41]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:18:42]  scope=mc23_13p6TeV
[2026-01-26 19:18:42]  status=None
[2026-01-26 19:18:42]  status_code=0
[2026-01-26 19:18:42]  storage_token=
[2026-01-26 19:18:42]  surl=/tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/log.48317872._001326.job.log.tgz.1
[2026-01-26 19:18:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/d2/log.48317872._001326.job.log.tgz.1
[2026-01-26 19:18:42]  workdir=None
[2026-01-26 19:18:42] ]
[2026-01-26 19:18:42] 2026-01-26 18:17:53,296 | INFO     | transferring file log.48317872._001326.job.log.tgz.1 from /tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/log.48317872._001326.job.log.tgz.1 to /tmp/j
[2026-01-26 19:18:42] 2026-01-26 18:17:53,296 | INFO     | executing command: /usr/bin/env mv /tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/log.48317872._001326.job.log.tgz.1 /tmp/job_11051186/atlas/pilot/sl
[2026-01-26 19:18:42] 2026-01-26 18:17:53,304 | INFO     | adding to output.list: log.48317872._001326.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/d2/log.48317872._001326.job.log.tg
[2026-01-26 19:18:42] 2026-01-26 18:17:53,304 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 19:18:42] 2026-01-26 18:17:53,304 | INFO     | summary of transferred files:
[2026-01-26 19:18:42] 2026-01-26 18:17:53,305 | INFO     |  -- lfn=log.48317872._001326.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 19:18:42] 2026-01-26 18:17:53,305 | INFO     | stage-out finished correctly
[2026-01-26 19:18:42] 2026-01-26 18:17:53,543 | INFO     | time since job start (2903s) is within the limit (349056.0s)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,549 | INFO     | time since job start (2905s) is within the limit (349056.0s)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,705 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 19:18:42] 2026-01-26 18:17:55,805 | INFO     | job 6983345107 has state=finished
[2026-01-26 19:18:42] 2026-01-26 18:17:55,805 | INFO     | preparing for final server update for job 6983345107 in state='finished'
[2026-01-26 19:18:42] 2026-01-26 18:17:55,805 | INFO     | reading metadata from: /tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/jobReport.json
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | added worker_node to metadata from /tmp/job_11051186/atlas/pilot/slots/0/workernode_map.json
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | job 6983345107 has finished - writing final server update
[2026-01-26 19:18:42] 2026-01-26 18:17:55,806 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,824 | INFO     | using path: /tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,825 | INFO     | extracted standard info from prmon json
[2026-01-26 19:18:42] 2026-01-26 18:17:55,825 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:18:42] 2026-01-26 18:17:55,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:18:42] 2026-01-26 18:17:55,825 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:18:42] 2026-01-26 18:17:55,825 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | sum of square deviations: 21358540.0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | sum of deviations: -378491092.0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | mean x: 1769450111.0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | mean y: 2598893.2439024393
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | intersect: 31358726454.01871
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | chi2: 0.001202293867118385
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | current memory leak: -17.72 B/s (using 41 data points, chi2=0.00)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | could have reported an average CPU frequency of 2609 MHz (5 samples)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | ..............................
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . Timing measurements:
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . get job = 0 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . initial setup = 2 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . payload setup = 2 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . stage-in = 0 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,826 | INFO     | . payload execution = 2884 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,827 | INFO     | . stage-out = 0 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,827 | INFO     | . log creation = 0 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,827 | INFO     | ..............................
[2026-01-26 19:18:42] 2026-01-26 18:17:55,874 | INFO     | 
[2026-01-26 19:18:42] 2026-01-26 18:17:55,874 | INFO     | job summary report
[2026-01-26 19:18:42] 2026-01-26 18:17:55,874 | INFO     | --------------------------------------------------
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | PanDA job id: 6983345107
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | task id: 48317872
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | errors: (none)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | pilot state: finished 
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | transexitcode: 0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | exeerrorcode: 0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | exeerrordiag: 
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | exitcode: 0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | exitmsg: OK
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | cpuconsumptiontime: 20713 s
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | nevents: 400
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | neventsw: 0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | pid: 9479
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | pgrp: 9479
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | corecount: 8
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | event service: False
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | sizes: {0: 2283812, 1: 2284384, 11: 2284384, 2890: 2309819, 2892: 2318847, 2894: 2319257}
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | --------------------------------------------------
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | 
[2026-01-26 19:18:42] 2026-01-26 18:17:55,875 | INFO     | executing command: ls -lF /tmp/job_11051186/atlas/pilot/slots/0
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | job 6983345107 has completed (purged errors)
[2026-01-26 19:18:42] 2026-01-26 18:17:55,886 | INFO     | overall cleanup function is called
[2026-01-26 19:18:42] 2026-01-26 18:17:56,892 | INFO     | --- collectZombieJob: --- 10, [9479]
[2026-01-26 19:18:42] 2026-01-26 18:17:56,892 | INFO     | zombie collector waiting for pid 9479
[2026-01-26 19:18:42] 2026-01-26 18:17:56,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:18:42] 2026-01-26 18:17:56,892 | INFO     | collected zombie processes
[2026-01-26 19:18:42] 2026-01-26 18:17:56,892 | INFO     | will attempt to kill all subprocesses of pid=9479
[2026-01-26 19:18:42] 2026-01-26 18:17:56,997 | INFO     | process IDs to be killed: [9479] (in reverse order)
[2026-01-26 19:18:42] 2026-01-26 18:17:57,035 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:18:42] 2026-01-26 18:17:57,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:18:42] 2026-01-26 18:17:57,039 | INFO     | did not find any defunct processes belonging to 9479
[2026-01-26 19:18:42] 2026-01-26 18:17:57,042 | INFO     | did not find any defunct processes belonging to 9479
[2026-01-26 19:18:42] 2026-01-26 18:17:57,042 | INFO     | ready for new job
[2026-01-26 19:18:42] 2026-01-26 18:17:57,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:18:42] 2026-01-26 18:17:57,043 | INFO     | **************************************
[2026-01-26 19:18:42] 2026-01-26 18:17:57,043 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:18:42] 2026-01-26 18:17:57,043 | INFO     | **************************************
[2026-01-26 19:18:42] 2026-01-26 18:17:57,043 | INFO     | 
[2026-01-26 19:18:42] 2026-01-26 18:17:57,056 | INFO     | architecture information:
[2026-01-26 19:18:42] 2026-01-26 18:17:57,056 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:18:42] 2026-01-26 18:17:57,061 | INFO     | cat /etc/os-release:
[2026-01-26 19:18:42] NAME="CentOS Linux"
[2026-01-26 19:18:42] VERSION="7 (Core)"
[2026-01-26 19:18:42] ID="centos"
[2026-01-26 19:18:42] ID_LIKE="rhel fedora"
[2026-01-26 19:18:42] VERSION_ID="7"
[2026-01-26 19:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:18:42] ANSI_COLOR="0;31"
[2026-01-26 19:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:18:42] HOME_URL="https://www.centos.org/"
[2026-01-26 19:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:18:42] 
[2026-01-26 19:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:18:42] 
[2026-01-26 19:18:42] 2026-01-26 18:17:57,061 | INFO     | **************************************
[2026-01-26 19:18:42] 2026-01-26 18:17:57,564 | INFO     | executing command: df -mP /tmp/job_11051186/atlas/pilot/slots/0
[2026-01-26 19:18:42] 2026-01-26 18:17:57,569 | INFO     | sufficient remaining disk space (220775579648 B)
[2026-01-26 19:18:42] 2026-01-26 18:17:57,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:18:42] 2026-01-26 18:17:57,569 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:18:42] 2026-01-26 18:17:57,570 | INFO     | update_server=False
[2026-01-26 19:18:42] 2026-01-26 18:17:57,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:18:42] 2026-01-26 18:17:57,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:18:42] 2026-01-26 18:17:57,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:18:42] 2026-01-26 18:17:57,573 | INFO     | all data control threads have been joined
[2026-01-26 19:18:42] 2026-01-26 18:17:57,949 | WARNING  | process 9479 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 19:18:42] 2026-01-26 18:17:58,032 | INFO     | using path: /tmp/job_11051186/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:18:42] 2026-01-26 18:17:58,032 | INFO     | using path: /tmp/job_11051186/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:18:42] 2026-01-26 18:17:58,032 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-26 19:18:42] 2026-01-26 18:17:58,032 | WARNING  | maxPSS not found in memory monitor output
[2026-01-26 19:18:42] 2026-01-26 18:17:58,032 | INFO     | skipping file size check of payload stdout file (/tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/payload.stdout) since it has not been created yet
[2026-01-26 19:18:42] 2026-01-26 18:17:58,033 | INFO     | executing command: df -mP /tmp/job_11051186/atlas/pilot/slots/0
[2026-01-26 19:18:42] 2026-01-26 18:17:58,040 | INFO     | sufficient remaining disk space (220775579648 B)
[2026-01-26 19:18:42] 2026-01-26 18:17:58,040 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-26 19:18:42] 2026-01-26 18:17:58,040 | INFO     | output file size check: skipping output file /tmp/job_11051186/atlas/pilot/slots/0/PanDA_Pilot-6983345107/HITS.48317872._001326.pool.root.1 since it does not exist
[2026-01-26 19:18:42] 2026-01-26 18:17:58,144 | INFO     | number of running child processes to parent process 9479: 1
[2026-01-26 19:18:42] 2026-01-26 18:17:58,144 | INFO     | maximum number of monitored processes: 6
[2026-01-26 19:18:42] 2026-01-26 18:17:58,144 | INFO     | aborting job monitoring since job object (job id=6983345107) has expired
[2026-01-26 19:18:42] 2026-01-26 18:17:58,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:18:42] 2026-01-26 18:17:58,144 | INFO     | will abort loop
[2026-01-26 19:18:42] 2026-01-26 18:17:58,571 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:58,575 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:58,578 | INFO     | [data] control thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:58,592 | INFO     | all payload control threads have been joined
[2026-01-26 19:18:42] 2026-01-26 18:17:58,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:18:42] 2026-01-26 18:17:59,030 | INFO     | all job control threads have been joined
[2026-01-26 19:18:42] 2026-01-26 18:17:59,149 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,213 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,225 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,532 | INFO     | [job] validate thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,597 | INFO     | [payload] control thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,712 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,885 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,942 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:17:59,948 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:18:00,034 | INFO     | [job] control thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:18:00,169 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:18:00,867 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:18:01,575 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:18:42] 2026-01-26 18:18:28,741 | INFO     | PID=798 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-26 19:18:42] 2026-01-26 18:18:28,741 | INFO     | .. there are 5 such processes running
[2026-01-26 19:18:42] 2026-01-26 18:18:28,742 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:18:42] 2026-01-26 18:18:28,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:18:42] 2026-01-26 18:18:28,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:18:42] 2026-01-26 18:18:34,835 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:18:42] 2026-01-26 18:18:36,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067385088)>']
[2026-01-26 19:18:42] 2026-01-26 18:18:37,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:18:42] 2026-01-26 18:18:37,786 | INFO     | [monitor] control thread has ended
[2026-01-26 19:18:42] 2026-01-26 18:18:41,825 | INFO     | all workflow threads have been joined
[2026-01-26 19:18:42] 2026-01-26 18:18:41,825 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:18:42] 2026-01-26 18:18:41,825 | INFO     | traces error code: 0
[2026-01-26 19:18:42] 2026-01-26 18:18:41,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:18:42] 2026-01-26 18:18:41,876 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:18:42] 2026-01-26 18:18:41,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:18:42] 2026-01-26 18:18:41,878 [wrapper] pilotpid: 798
[2026-01-26 19:18:42] 2026-01-26 18:18:41,879 [wrapper] Pilot exit status: 0
[2026-01-26 19:18:42] 2026-01-26 18:18:41,883 [wrapper] pandaids: 6983345107
[2026-01-26 19:18:42] 2026-01-26 18:18:41,907 [wrapper] cleanup supervisor_pilot 21690 799
[2026-01-26 19:18:42] 2026-01-26 18:18:41,908 [wrapper] Test setup, not cleaning
[2026-01-26 19:18:42] 2026-01-26 18:18:41,909 [wrapper] apfmon messages muted
[2026-01-26 19:18:42] 2026-01-26 18:18:41,910 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:18:42] 2026-01-26 18:18:41,911 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:18:42]  *** Error codes and diagnostics ***
[2026-01-26 19:18:42]     "exeErrorCode": 0,
[2026-01-26 19:18:42]     "exeErrorDiag": "",
[2026-01-26 19:18:42]     "pilotErrorCode": 0,
[2026-01-26 19:18:42]     "pilotErrorDiag": "",
[2026-01-26 19:18:42]  *** Listing of results directory ***
[2026-01-26 19:18:42] total 670196
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      5111 Jan 25 21:48 queuedata.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-26 19:18:42] -rwx------ 1 mf493845 unix-user     36322 Jan 25 21:48 runpilot2-wrapper.sh
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       100 Jan 26 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:18:42] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 26 16:23 run_atlas
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       105 Jan 26 16:23 job.xml
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:29 start_atlas.sh
[2026-01-26 19:18:42] drwxrwx--x 2 mf493845 unix-user       100 Jan 26 18:29 shared
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user    597744 Jan 26 18:29 input.tar.gz
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      6388 Jan 26 18:29 init_data.xml
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user 493365962 Jan 26 18:29 EVNT.48317869._000027.pool.root.1
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user         0 Jan 26 18:29 boinc_setup_complete
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      8192 Jan 26 18:29 boinc_mmap_file
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user         0 Jan 26 18:29 boinc_lockfile
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      2513 Jan 26 18:29 pandaJob.out
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user   1006384 Jan 26 18:29 agis_schedconf.cvmfs.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user   1516246 Jan 26 18:29 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       420 Jan 26 18:29 workernode_map.json
[2026-01-26 19:18:42] drwx------ 5 mf493845 unix-user       440 Jan 26 18:29 pilot3
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user 187464716 Jan 26 19:17 HITS.48317872._001326.pool.root.1
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      1021 Jan 26 19:17 memory_monitor_summary.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user    306128 Jan 26 19:17 log.48317872._001326.job.log.tgz.1
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      6320 Jan 26 19:17 heartbeat.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user        95 Jan 26 19:18 pilot_heartbeat.json
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      6384 Jan 26 19:18 pilotlog.txt
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user    461560 Jan 26 19:18 log.48317872._001326.job.log.1
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       357 Jan 26 19:18 output.list
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       620 Jan 26 19:18 runtime_log
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user    788480 Jan 26 19:18 result.tar.gz
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user       643 Jan 26 19:18 vczNDmgDM48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4J8KDmzLeH7n.diag
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user      9219 Jan 26 19:18 runtime_log.err
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user     22672 Jan 26 19:18 stderr.txt
[2026-01-26 19:18:42] HITS file was successfully produced:
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user 187464716 Jan 26 19:17 shared/HITS.pool.root.1
[2026-01-26 19:18:42]  *** Contents of shared directory: ***
[2026-01-26 19:18:42] total 666248
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:29 start_atlas.sh
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user    597744 Jan 26 18:29 input.tar.gz
[2026-01-26 19:18:42] -rw-r--r-- 2 mf493845 unix-user 493365962 Jan 26 18:29 ATLAS.root_0
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user 187464716 Jan 26 19:17 HITS.pool.root.1
[2026-01-26 19:18:42] -rw------- 1 mf493845 unix-user    788480 Jan 26 19:18 result.tar.gz
19:18:43 (29390): run_atlas exited; CPU time 20756.961115
19:18:43 (29390): called boinc_finish(0)

</stderr_txt>
]]>

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