Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:28 (1351994): wrapper (7.7.26015): starting
02:49:28 (1351994): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 02:49:28] Arguments: --nthreads 3
[2026-01-27 02:49:28] Threads: 3
[2026-01-27 02:49:28] Checking for CVMFS
[2026-01-27 02:49:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 02:49:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 02:49:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 02:49:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 02:49:29] 2.9.2.0 4188202 8663 88108 155568 1 50 22370236 36864001 0 130560 0 3882671 99.986 277230 6710 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 02:49:29] CVMFS is ok
[2026-01-27 02:49:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 02:49:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 02:49:29] Further information can be found at the LHC@home message board.
[2026-01-27 02:49:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 02:49:29] Checking for apptainer binary...
[2026-01-27 02:49:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 02:49:29] Running /usr/bin/apptainer --version
[2026-01-27 02:49:29] apptainer version 1.4.1-1.1
[2026-01-27 02:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 02:49:29] thA327
[2026-01-27 02:49:29] apptainer works
[2026-01-27 02:49:29] Set ATHENA_PROC_NUMBER=3
[2026-01-27 02:49:29] Set ATHENA_CORE_NUMBER=3
[2026-01-27 02:49:29] Starting ATLAS job with PandaID=6983014668
[2026-01-27 02:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 04:18:04]  *** The last 200 lines of the pilot log: ***
[2026-01-27 04:18:04] 2026-01-27 03:17:32,089 | INFO     | overall cleanup function is called
[2026-01-27 04:18:04] 2026-01-27 03:17:32,761 | WARNING  | process 1360447 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 04:18:04] 2026-01-27 03:17:32,789 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 04:18:04] 2026-01-27 03:17:32,789 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 04:18:04] 2026-01-27 03:17:32,789 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 04:18:04] 2026-01-27 03:17:32,789 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 04:18:04] 2026-01-27 03:17:32,790 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6983014668/payload.stdout) since it has not been created yet
[2026-01-27 04:18:04] 2026-01-27 03:17:32,790 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:18:04] 2026-01-27 03:17:32,799 | INFO     | sufficient remaining disk space (380841754624 B)
[2026-01-27 04:18:04] 2026-01-27 03:17:32,800 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 04:18:04] 2026-01-27 03:17:32,800 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6983014668/HITS.48317931._000676.pool.root.1 since it does not exist
[2026-01-27 04:18:04] 2026-01-27 03:17:32,837 | INFO     | number of running child processes to parent process 1360447: 1
[2026-01-27 04:18:04] 2026-01-27 03:17:32,837 | INFO     | maximum number of monitored processes: 6
[2026-01-27 04:18:04] 2026-01-27 03:17:32,837 | INFO     | aborting job monitoring since job object (job id=6983014668) has expired
[2026-01-27 04:18:04] 2026-01-27 03:17:33,095 | INFO     | --- collectZombieJob: --- 10, [1360447]
[2026-01-27 04:18:04] 2026-01-27 03:17:33,096 | INFO     | zombie collector waiting for pid 1360447
[2026-01-27 04:18:04] 2026-01-27 03:17:33,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 04:18:04] 2026-01-27 03:17:33,096 | INFO     | collected zombie processes
[2026-01-27 04:18:04] 2026-01-27 03:17:33,096 | INFO     | will attempt to kill all subprocesses of pid=1360447
[2026-01-27 04:18:04] 2026-01-27 03:17:33,136 | INFO     | process IDs to be killed: [1360447] (in reverse order)
[2026-01-27 04:18:04] 2026-01-27 03:17:33,160 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 04:18:04] 2026-01-27 03:17:33,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 04:18:04] 2026-01-27 03:17:33,161 | INFO     | did not find any defunct processes belonging to 1360447
[2026-01-27 04:18:04] 2026-01-27 03:17:33,162 | INFO     | did not find any defunct processes belonging to 1360447
[2026-01-27 04:18:04] 2026-01-27 03:17:33,162 | INFO     | ready for new job
[2026-01-27 04:18:04] 2026-01-27 03:17:33,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | **************************************
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | **************************************
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | 
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | architecture information:
[2026-01-27 04:18:04] 2026-01-27 03:17:33,163 | INFO     | executing command: cat /etc/os-release
[2026-01-27 04:18:04] 2026-01-27 03:17:33,171 | INFO     | cat /etc/os-release:
[2026-01-27 04:18:04] NAME="CentOS Linux"
[2026-01-27 04:18:04] VERSION="7 (Core)"
[2026-01-27 04:18:04] ID="centos"
[2026-01-27 04:18:04] ID_LIKE="rhel fedora"
[2026-01-27 04:18:04] VERSION_ID="7"
[2026-01-27 04:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 04:18:04] ANSI_COLOR="0;31"
[2026-01-27 04:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 04:18:04] HOME_URL="https://www.centos.org/"
[2026-01-27 04:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 04:18:04] 
[2026-01-27 04:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 04:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 04:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 04:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 04:18:04] 
[2026-01-27 04:18:04] 2026-01-27 03:17:33,172 | INFO     | **************************************
[2026-01-27 04:18:04] 2026-01-27 03:17:33,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:18:04] 2026-01-27 03:17:33,685 | INFO     | sufficient remaining disk space (380842803200 B)
[2026-01-27 04:18:04] 2026-01-27 03:17:33,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | INFO     | update_server=False
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:18:04] 2026-01-27 03:17:33,686 | INFO     | will abort loop
[2026-01-27 04:18:04] 2026-01-27 03:17:34,102 | INFO     | job.realtimelogging is not enabled
[2026-01-27 04:18:04] 2026-01-27 03:17:34,225 | INFO     | all job control threads have been joined
[2026-01-27 04:18:04] 2026-01-27 03:17:34,231 | INFO     | all data control threads have been joined
[2026-01-27 04:18:04] 2026-01-27 03:17:34,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 04:18:04] 2026-01-27 03:17:34,401 | INFO     | all payload control threads have been joined
[2026-01-27 04:18:04] 2026-01-27 03:17:34,691 | INFO     | [job] retrieve thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:34,691 | INFO     | [job] queue monitor thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:34,692 | INFO     | [job] job monitor thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,108 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,145 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,230 | INFO     | [job] control thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,236 | INFO     | [data] control thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,369 | INFO     | [payload] failed_post thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,407 | INFO     | [payload] control thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 04:18:04] 2026-01-27 03:17:35,765 | INFO     | [job] validate thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,788 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,872 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:35,882 | INFO     | [payload] validate_post thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:36,000 | INFO     | [data] copytool_in thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:36,270 | INFO     | [data] copytool_out thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:39,450 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 04:18:04] 2026-01-27 03:17:44,700 | INFO     | [monitor] cgroup control has ended
[2026-01-27 04:18:04] 2026-01-27 03:17:45,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795407521600)>', '<ExcThread(monitor, started 139794919180032)>']
[2026-01-27 04:18:04] 2026-01-27 03:17:50,385 | INFO     | all workflow threads have been joined
[2026-01-27 04:18:04] 2026-01-27 03:17:50,386 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 04:18:04] 2026-01-27 03:17:50,386 | INFO     | traces error code: 0
[2026-01-27 04:18:04] 2026-01-27 03:17:50,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | INFO     | PID=1356030 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 04:18:04] 2026-01-27 03:18:04,286 | INFO     | [monitor] control thread has ended
[2026-01-27 04:18:04] 2026-01-27 03:18:04,331 [wrapper] ==== pilot stdout END ====
[2026-01-27 04:18:04] 2026-01-27 03:18:04,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 04:18:04] 2026-01-27 03:18:04,336 [wrapper] pilotpid: 1356030
[2026-01-27 04:18:04] 2026-01-27 03:18:04,338 [wrapper] Pilot exit status: 0
[2026-01-27 04:18:04] 2026-01-27 03:18:04,345 [wrapper] pandaids: 6983014668
[2026-01-27 04:18:04] 2026-01-27 03:18:04,361 [wrapper] cleanup supervisor_pilot 1365483 1356031
[2026-01-27 04:18:04] 2026-01-27 03:18:04,363 [wrapper] Test setup, not cleaning
[2026-01-27 04:18:04] 2026-01-27 03:18:04,366 [wrapper] apfmon messages muted
[2026-01-27 04:18:04] 2026-01-27 03:18:04,368 [wrapper] ==== wrapper stdout END ====
[2026-01-27 04:18:04] 2026-01-27 03:18:04,370 [wrapper] ==== wrapper stderr END ====
[2026-01-27 04:18:04]  *** Error codes and diagnostics ***
[2026-01-27 04:18:04]     "exeErrorCode": 0,
[2026-01-27 04:18:04]     "exeErrorDiag": "",
[2026-01-27 04:18:04]     "pilotErrorCode": 0,
[2026-01-27 04:18:04]     "pilotErrorDiag": "",
[2026-01-27 04:18:04]  *** Listing of results directory ***
[2026-01-27 04:18:04] total 676588
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc      5111 Jan 25 15:11 queuedata.json
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc    584422 Jan 25 15:11 pilot3.tar.gz
[2026-01-27 04:18:04] -rwx------ 1 boinc boinc     36322 Jan 25 15:11 runpilot2-wrapper.sh
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc       100 Jan 27 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 04:18:04] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 02:49 run_atlas
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc       105 Jan 27 02:49 job.xml
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc 501229944 Jan 27 02:49 EVNT.48317929._000014.pool.root.1
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc    597744 Jan 27 02:49 input.tar.gz
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:49 start_atlas.sh
[2026-01-27 04:18:04] drwxrwx--x 2 boinc boinc      4096 Jan 27 02:49 shared
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:49 boinc_setup_complete
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc      6446 Jan 27 02:49 init_data.xml
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:49 boinc_lockfile
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc      2505 Jan 27 02:49 pandaJob.out
[2026-01-27 04:18:04] -rw------- 1 boinc boinc   1006441 Jan 27 02:49 agis_schedconf.cvmfs.json
[2026-01-27 04:18:04] -rw------- 1 boinc boinc   1516246 Jan 27 02:49 agis_ddmendpoints.agis.ALL.json
[2026-01-27 04:18:04] -rw------- 1 boinc boinc       423 Jan 27 02:49 workernode_map.json
[2026-01-27 04:18:04] drwx------ 5 boinc boinc      4096 Jan 27 02:49 pilot3
[2026-01-27 04:18:04] -rw------- 1 boinc boinc 185611432 Jan 27 04:17 HITS.48317931._000676.pool.root.1
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc       530 Jan 27 04:17 boinc_task_state.xml
[2026-01-27 04:18:04] -rw------- 1 boinc boinc      1015 Jan 27 04:17 memory_monitor_summary.json
[2026-01-27 04:18:04] -rw------- 1 boinc boinc    258453 Jan 27 04:17 log.48317931._000676.job.log.tgz.1
[2026-01-27 04:18:04] -rw------- 1 boinc boinc      6293 Jan 27 04:17 heartbeat.json
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc        27 Jan 27 04:17 wrapper_checkpoint.txt
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc      8192 Jan 27 04:17 boinc_mmap_file
[2026-01-27 04:18:04] -rw------- 1 boinc boinc       747 Jan 27 04:18 pilotlog.txt
[2026-01-27 04:18:04] -rw------- 1 boinc boinc        95 Jan 27 04:18 pilot_heartbeat.json
[2026-01-27 04:18:04] -rw------- 1 boinc boinc    769063 Jan 27 04:18 log.48317931._000676.job.log.1
[2026-01-27 04:18:04] -rw------- 1 boinc boinc       357 Jan 27 04:18 output.list
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:18 runtime_log
[2026-01-27 04:18:04] -rw------- 1 boinc boinc   1044480 Jan 27 04:18 result.tar.gz
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc      8896 Jan 27 04:18 runtime_log.err
[2026-01-27 04:18:04] -rw------- 1 boinc boinc       657 Jan 27 04:18 KnJODmo0F48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoy0KDmfehTHm.diag
[2026-01-27 04:18:04] -rw-r--r-- 1 boinc boinc     12585 Jan 27 04:18 stderr.txt
[2026-01-27 04:18:04] HITS file was successfully produced:
[2026-01-27 04:18:04] -rw------- 1 boinc boinc 185611432 Jan 27 04:17 shared/HITS.pool.root.1
[2026-01-27 04:18:04]  *** Contents of shared directory: ***
[2026-01-27 04:18:04] total 672376
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc 501229944 Jan 27 02:49 ATLAS.root_0
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc    597744 Jan 27 02:49 input.tar.gz
[2026-01-27 04:18:04] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:49 start_atlas.sh
[2026-01-27 04:18:04] -rw------- 1 boinc boinc 185611432 Jan 27 04:17 HITS.pool.root.1
[2026-01-27 04:18:04] -rw------- 1 boinc boinc   1044480 Jan 27 04:18 result.tar.gz
04:18:06 (1351994): run_atlas exited; CPU time 15115.643889
04:18:06 (1351994): called boinc_finish(0)

</stderr_txt>
]]>

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