Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:36:47 (1269686): wrapper (7.7.26015): starting
07:36:47 (1269686): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 07:36:47] Arguments: --nthreads 4
[2026-01-27 07:36:47] Threads: 4
[2026-01-27 07:36:47] Checking for CVMFS
[2026-01-27 07:36:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 07:36:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 07:36:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 07:36:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 07:36:47] 2.9.2.0 3774380 9170 106144 155575 0 74 23077310 36864000 0 130560 0 4454410 99.988 294435 6196 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 07:36:47] CVMFS is ok
[2026-01-27 07:36:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 07:36:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 07:36:47] Further information can be found at the LHC@home message board.
[2026-01-27 07:36:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 07:36:47] Checking for apptainer binary...
[2026-01-27 07:36:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 07:36:47] Running /usr/bin/apptainer --version
[2026-01-27 07:36:47] apptainer version 1.4.1-1.1
[2026-01-27 07:36:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 07:36:48] thA309
[2026-01-27 07:36:48] apptainer works
[2026-01-27 07:36:48] Set ATHENA_PROC_NUMBER=4
[2026-01-27 07:36:48] Set ATHENA_CORE_NUMBER=4
[2026-01-27 07:36:48] Starting ATLAS job with PandaID=6982692309
[2026-01-27 07:36:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:44:21]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | job 6982692309 has completed (purged errors)
[2026-01-27 08:44:21] 2026-01-27 07:43:57,662 | INFO     | overall cleanup function is called
[2026-01-27 08:44:21] 2026-01-27 07:43:58,669 | INFO     | --- collectZombieJob: --- 10, [1278172]
[2026-01-27 08:44:21] 2026-01-27 07:43:58,669 | INFO     | zombie collector waiting for pid 1278172
[2026-01-27 08:44:21] 2026-01-27 07:43:58,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:44:21] 2026-01-27 07:43:58,669 | INFO     | collected zombie processes
[2026-01-27 08:44:21] 2026-01-27 07:43:58,669 | INFO     | will attempt to kill all subprocesses of pid=1278172
[2026-01-27 08:44:21] 2026-01-27 07:43:58,718 | INFO     | process IDs to be killed: [1278172] (in reverse order)
[2026-01-27 08:44:21] 2026-01-27 07:43:58,754 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:44:21] 2026-01-27 07:43:58,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:44:21] 2026-01-27 07:43:58,756 | INFO     | did not find any defunct processes belonging to 1278172
[2026-01-27 08:44:21] 2026-01-27 07:43:58,757 | INFO     | did not find any defunct processes belonging to 1278172
[2026-01-27 08:44:21] 2026-01-27 07:43:58,757 | INFO     | ready for new job
[2026-01-27 08:44:21] 2026-01-27 07:43:58,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:44:21] 2026-01-27 07:43:58,758 | INFO     | **************************************
[2026-01-27 08:44:21] 2026-01-27 07:43:58,758 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:44:21] 2026-01-27 07:43:58,758 | INFO     | **************************************
[2026-01-27 08:44:21] 2026-01-27 07:43:58,758 | INFO     | 
[2026-01-27 08:44:21] 2026-01-27 07:43:58,759 | INFO     | architecture information:
[2026-01-27 08:44:21] 2026-01-27 07:43:58,759 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:44:21] 2026-01-27 07:43:58,773 | INFO     | cat /etc/os-release:
[2026-01-27 08:44:21] NAME="CentOS Linux"
[2026-01-27 08:44:21] VERSION="7 (Core)"
[2026-01-27 08:44:21] ID="centos"
[2026-01-27 08:44:21] ID_LIKE="rhel fedora"
[2026-01-27 08:44:21] VERSION_ID="7"
[2026-01-27 08:44:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:44:21] ANSI_COLOR="0;31"
[2026-01-27 08:44:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:44:21] HOME_URL="https://www.centos.org/"
[2026-01-27 08:44:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:44:21] 
[2026-01-27 08:44:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:44:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:44:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:44:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:44:21] 
[2026-01-27 08:44:21] 2026-01-27 07:43:58,774 | INFO     | **************************************
[2026-01-27 08:44:21] 2026-01-27 07:43:59,085 | WARNING  | process 1278172 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 08:44:21] 2026-01-27 07:43:59,121 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 08:44:21] 2026-01-27 07:43:59,165 | INFO     | number of running child processes to parent process 1278172: 1
[2026-01-27 08:44:21] 2026-01-27 07:43:59,165 | INFO     | maximum number of monitored processes: 6
[2026-01-27 08:44:21] 2026-01-27 07:43:59,165 | INFO     | aborting job monitoring since job object (job id=6982692309) has expired
[2026-01-27 08:44:21] 2026-01-27 07:43:59,277 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 08:44:21] 2026-01-27 07:43:59,295 | INFO     | sufficient remaining disk space (234102980608 B)
[2026-01-27 08:44:21] 2026-01-27 07:43:59,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:44:21] 2026-01-27 07:43:59,295 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:44:21] 2026-01-27 07:43:59,295 | INFO     | update_server=False
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | INFO     | will abort loop
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:44:21] 2026-01-27 07:43:59,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:44:21] 2026-01-27 07:43:59,503 | INFO     | all data control threads have been joined
[2026-01-27 08:44:21] 2026-01-27 07:44:00,188 | INFO     | all job control threads have been joined
[2026-01-27 08:44:21] 2026-01-27 07:44:00,301 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,301 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,302 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,357 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,359 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,509 | INFO     | [data] control thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,516 | INFO     | all payload control threads have been joined
[2026-01-27 08:44:21] 2026-01-27 07:44:00,550 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:00,598 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,097 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:44:21] 2026-01-27 07:44:01,194 | INFO     | [job] control thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,302 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,521 | INFO     | [payload] control thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,657 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,699 | INFO     | [job] validate thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:01,804 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:05,181 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:44:21] 2026-01-27 07:44:14,400 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:44:21] 2026-01-27 07:44:16,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125032990528)>', '<ExcThread(monitor, started 140124197197568)>']
[2026-01-27 08:44:21] 2026-01-27 07:44:16,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:44:21] 2026-01-27 07:44:16,387 | INFO     | [monitor] control thread has ended
[2026-01-27 08:44:21] 2026-01-27 07:44:21,132 | INFO     | all workflow threads have been joined
[2026-01-27 08:44:21] 2026-01-27 07:44:21,132 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:44:21] 2026-01-27 07:44:21,133 | INFO     | traces error code: 0
[2026-01-27 08:44:21] 2026-01-27 07:44:21,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:44:21] 2026-01-27 07:44:21,213 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:44:21] 2026-01-27 07:44:21,217 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:44:21] 2026-01-27 07:44:21,221 [wrapper] pilotpid: 1273651
[2026-01-27 08:44:21] 2026-01-27 07:44:21,225 [wrapper] Pilot exit status: 0
[2026-01-27 08:44:21] 2026-01-27 07:44:21,237 [wrapper] pandaids: 6982692309
[2026-01-27 08:44:21] 2026-01-27 07:44:21,261 [wrapper] cleanup supervisor_pilot 1283937 1273652
[2026-01-27 08:44:21] 2026-01-27 07:44:21,265 [wrapper] Test setup, not cleaning
[2026-01-27 08:44:21] 2026-01-27 07:44:21,269 [wrapper] apfmon messages muted
[2026-01-27 08:44:21] 2026-01-27 07:44:21,273 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:44:21] 2026-01-27 07:44:21,277 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:44:21]  *** Error codes and diagnostics ***
[2026-01-27 08:44:21]     "exeErrorCode": 0,
[2026-01-27 08:44:21]     "exeErrorDiag": "",
[2026-01-27 08:44:21]     "pilotErrorCode": 0,
[2026-01-27 08:44:21]     "pilotErrorDiag": "",
[2026-01-27 08:44:21]  *** Listing of results directory ***
[2026-01-27 08:44:21] total 664924
[2026-01-27 08:44:21] -rwx------ 1 boinc boinc     36322 Jan 25 07:27 runpilot2-wrapper.sh
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc      5111 Jan 25 07:28 queuedata.json
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc    584422 Jan 25 07:28 pilot3.tar.gz
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc       100 Jan 27 07:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:44:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 07:36 run_atlas
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc       105 Jan 27 07:36 job.xml
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc 492213572 Jan 27 07:36 EVNT.48310824._000123.pool.root.1
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc    597761 Jan 27 07:36 input.tar.gz
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:36 start_atlas.sh
[2026-01-27 08:44:21] drwxrwx--x 2 boinc boinc      4096 Jan 27 07:36 shared
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:36 boinc_setup_complete
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc      6377 Jan 27 07:36 init_data.xml
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 07:36 boinc_lockfile
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc      2526 Jan 27 07:36 pandaJob.out
[2026-01-27 08:44:21] -rw------- 1 boinc boinc   1004335 Jan 27 07:37 agis_schedconf.cvmfs.json
[2026-01-27 08:44:21] -rw------- 1 boinc boinc   1516246 Jan 27 07:37 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:44:21] -rw------- 1 boinc boinc       419 Jan 27 07:37 workernode_map.json
[2026-01-27 08:44:21] drwx------ 5 boinc boinc      4096 Jan 27 07:37 pilot3
[2026-01-27 08:44:21] -rw------- 1 boinc boinc        95 Jan 27 08:43 pilot_heartbeat.json
[2026-01-27 08:44:21] -rw------- 1 boinc boinc 182967329 Jan 27 08:43 HITS.48310826._010257.pool.root.1
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc       530 Jan 27 08:43 boinc_task_state.xml
[2026-01-27 08:44:21] -rw------- 1 boinc boinc      1036 Jan 27 08:43 memory_monitor_summary.json
[2026-01-27 08:44:21] -rw------- 1 boinc boinc    291027 Jan 27 08:43 log.48310826._010257.job.log.tgz.1
[2026-01-27 08:44:21] -rw------- 1 boinc boinc      6310 Jan 27 08:43 heartbeat.json
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc      8192 Jan 27 08:44 boinc_mmap_file
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc        27 Jan 27 08:44 wrapper_checkpoint.txt
[2026-01-27 08:44:21] -rw------- 1 boinc boinc      5076 Jan 27 08:44 pilotlog.txt
[2026-01-27 08:44:21] -rw------- 1 boinc boinc    597134 Jan 27 08:44 log.48310826._010257.job.log.1
[2026-01-27 08:44:21] -rw------- 1 boinc boinc       357 Jan 27 08:44 output.list
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc       620 Jan 27 08:44 runtime_log
[2026-01-27 08:44:21] -rw------- 1 boinc boinc    901120 Jan 27 08:44 result.tar.gz
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc      8896 Jan 27 08:44 runtime_log.err
[2026-01-27 08:44:21] -rw------- 1 boinc boinc       657 Jan 27 08:44 DiAMDmUm838n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcK0KDmKuJNNn.diag
[2026-01-27 08:44:21] -rw-r--r-- 1 boinc boinc     11766 Jan 27 08:44 stderr.txt
[2026-01-27 08:44:21] HITS file was successfully produced:
[2026-01-27 08:44:21] -rw------- 1 boinc boinc 182967329 Jan 27 08:43 shared/HITS.pool.root.1
[2026-01-27 08:44:21]  *** Contents of shared directory: ***
[2026-01-27 08:44:21] total 660848
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc 492213572 Jan 27 07:36 ATLAS.root_0
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc    597761 Jan 27 07:36 input.tar.gz
[2026-01-27 08:44:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 07:36 start_atlas.sh
[2026-01-27 08:44:21] -rw------- 1 boinc boinc 182967329 Jan 27 08:43 HITS.pool.root.1
[2026-01-27 08:44:21] -rw------- 1 boinc boinc    901120 Jan 27 08:44 result.tar.gz
08:44:23 (1269686): run_atlas exited; CPU time 15092.682596
08:44:23 (1269686): called boinc_finish(0)

</stderr_txt>
]]>

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