Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:35:52 (2540347): wrapper (7.7.26015): starting
13:35:52 (2540347): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 13:35:52] Arguments: --nthreads 4
[2026-01-27 13:35:52] Threads: 4
[2026-01-27 13:35:52] Checking for CVMFS
[2026-01-27 13:35:52] No cvmfs_config command found, will try listing directly
[2026-01-27 13:35:52] CVMFS is ok
[2026-01-27 13:35:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 13:35:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 13:35:52] Further information can be found at the LHC@home message board.
[2026-01-27 13:35:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 13:35:52] Checking for apptainer binary...
[2026-01-27 13:35:52] which: no apptainer in ((null))
[2026-01-27 13:35:52] apptainer is not installed, using version from CVMFS
[2026-01-27 13:35:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 13:35:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2026-01-27 13:35:52] apptainer works
[2026-01-27 13:35:52] Set ATHENA_PROC_NUMBER=4
[2026-01-27 13:35:52] Set ATHENA_CORE_NUMBER=4
[2026-01-27 13:35:52] Starting ATLAS job with PandaID=6983304341
[2026-01-27 13:35:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 17:03:36]  *** The last 200 lines of the pilot log: ***
[2026-01-27 17:03:36] 2026-01-27 16:02:48,113 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 17:03:36] 2026-01-27 16:02:48,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 17:03:36] 2026-01-27 16:02:48,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 17:03:36] 2026-01-27 16:02:48,118 | INFO     | fitting pss+swap vs Time
[2026-01-27 17:03:36] 2026-01-27 16:02:48,119 | INFO     | sum of square deviations: 2593916542.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,120 | INFO     | sum of deviations: 13483313852.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,120 | INFO     | mean x: 1769523555.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,120 | INFO     | mean y: 2335483.3990147784
[2026-01-27 17:03:36] 2026-01-27 16:02:48,120 | INFO     | intersect: -9195740504.880713
[2026-01-27 17:03:36] 2026-01-27 16:02:48,121 | INFO     | chi2: 1.3825044198723824
[2026-01-27 17:03:36] 2026-01-27 16:02:48,121 | INFO     | sum of square deviations: 2406926989.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,122 | INFO     | sum of deviations: 12993103547.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,122 | INFO     | mean x: 1769523402.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,123 | INFO     | mean y: 2335083.1868686867
[2026-01-27 17:03:36] 2026-01-27 16:02:48,123 | INFO     | intersect: -9549928404.11698
[2026-01-27 17:03:36] 2026-01-27 16:02:48,123 | INFO     | chi2: 1.3831796557257976
[2026-01-27 17:03:36] 2026-01-27 16:02:48,123 | INFO     | current chi2=1.3831796557257976 (change=-0.04884149690295775 %)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,123 | INFO     | right removable region: 197
[2026-01-27 17:03:36] 2026-01-27 16:02:48,124 | INFO     | sum of square deviations: 2406926989.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,125 | INFO     | sum of deviations: -13649773000.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,125 | INFO     | mean x: 1769523707.5
[2026-01-27 17:03:36] 2026-01-27 16:02:48,125 | INFO     | mean y: 2357354.611111111
[2026-01-27 17:03:36] 2026-01-27 16:02:48,125 | INFO     | intersect: 10037392497.657007
[2026-01-27 17:03:36] 2026-01-27 16:02:48,125 | INFO     | chi2: 0.037308176290577984
[2026-01-27 17:03:36] 2026-01-27 16:02:48,126 | INFO     | current chi2=0.037308176290577984 (change=97.30140636410971 %)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,126 | INFO     | sum of square deviations: 2229146912.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,127 | INFO     | sum of deviations: -13357412657.999998
[2026-01-27 17:03:36] 2026-01-27 16:02:48,127 | INFO     | mean x: 1769523860.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,127 | INFO     | mean y: 2357081.357512953
[2026-01-27 17:03:36] 2026-01-27 16:02:48,127 | INFO     | intersect: 10605633284.894258
[2026-01-27 17:03:36] 2026-01-27 16:02:48,128 | INFO     | chi2: 0.03288095727608905
[2026-01-27 17:03:36] 2026-01-27 16:02:48,128 | INFO     | current chi2=0.03288095727608905 (change=11.86661867363109 %)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,128 | INFO     | left removable region: 20
[2026-01-27 17:03:36] 2026-01-27 16:02:48,128 | INFO     | sum of square deviations: 1719429448.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,129 | INFO     | sum of deviations: -7798387558.999999
[2026-01-27 17:03:36] 2026-01-27 16:02:48,129 | INFO     | mean x: 1769523982.0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,130 | INFO     | mean y: 2351935.6553672315
[2026-01-27 17:03:36] 2026-01-27 16:02:48,130 | INFO     | intersect: 8027940785.859203
[2026-01-27 17:03:36] 2026-01-27 16:02:48,130 | INFO     | chi2: 0.024122072719413527
[2026-01-27 17:03:36] 2026-01-27 16:02:48,130 | INFO     | current memory leak: -4.54 B/s (using 177 data points, chi2=0.02)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | could have reported an average CPU frequency of 2635 MHz (10 samples)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | ..............................
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | . Timing measurements:
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | . get job = 0 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | . initial setup = 6 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,131 | INFO     | . payload setup = 6 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,132 | INFO     | . stage-in = 0 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,132 | INFO     | . payload execution = 12374 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,132 | INFO     | . stage-out = 1 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,132 | INFO     | . log creation = 0 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,132 | INFO     | ..............................
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | 
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | job summary report
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | --------------------------------------------------
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | PanDA job id: 6983304341
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | task id: 48318042
[2026-01-27 17:03:36] 2026-01-27 16:02:48,227 | INFO     | errors: (none)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | pilot state: finished 
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | transexitcode: 0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | exeerrorcode: 0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | exeerrordiag: 
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | exitcode: 0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | exitmsg: OK
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | cpuconsumptiontime: 47605 s
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | nevents: 400
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | neventsw: 0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | pid: 2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:48,228 | INFO     | pgrp: 2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | corecount: 4
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | event service: False
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | sizes: {0: 2283880, 1: 2284284, 11: 2284284, 12384: 2313893, 12385: 2322913, 12386: 2323291}
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | --------------------------------------------------
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | 
[2026-01-27 17:03:36] 2026-01-27 16:02:48,229 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2026-01-27 17:03:36] 2026-01-27 16:02:48,252 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,252 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | job 6983304341 has completed (purged errors)
[2026-01-27 17:03:36] 2026-01-27 16:02:48,254 | INFO     | overall cleanup function is called
[2026-01-27 17:03:36] 2026-01-27 16:02:49,263 | INFO     | --- collectZombieJob: --- 10, [2549195]
[2026-01-27 17:03:36] 2026-01-27 16:02:49,263 | INFO     | zombie collector waiting for pid 2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:49,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 17:03:36] 2026-01-27 16:02:49,263 | INFO     | collected zombie processes
[2026-01-27 17:03:36] 2026-01-27 16:02:49,263 | INFO     | will attempt to kill all subprocesses of pid=2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:49,664 | INFO     | process IDs to be killed: [2549195] (in reverse order)
[2026-01-27 17:03:36] 2026-01-27 16:02:49,777 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 17:03:36] 2026-01-27 16:02:49,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 17:03:36] 2026-01-27 16:02:49,791 | INFO     | did not find any defunct processes belonging to 2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:49,803 | INFO     | did not find any defunct processes belonging to 2549195
[2026-01-27 17:03:36] 2026-01-27 16:02:49,803 | INFO     | ready for new job
[2026-01-27 17:03:36] 2026-01-27 16:02:49,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 17:03:36] 2026-01-27 16:02:49,806 | INFO     | **************************************
[2026-01-27 17:03:36] 2026-01-27 16:02:49,806 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 17:03:36] 2026-01-27 16:02:49,806 | INFO     | **************************************
[2026-01-27 17:03:36] 2026-01-27 16:02:49,806 | INFO     | 
[2026-01-27 17:03:36] 2026-01-27 16:02:49,810 | INFO     | architecture information:
[2026-01-27 17:03:36] 2026-01-27 16:02:49,810 | INFO     | executing command: cat /etc/os-release
[2026-01-27 17:03:36] 2026-01-27 16:02:49,826 | INFO     | cat /etc/os-release:
[2026-01-27 17:03:36] NAME="CentOS Linux"
[2026-01-27 17:03:36] VERSION="7 (Core)"
[2026-01-27 17:03:36] ID="centos"
[2026-01-27 17:03:36] ID_LIKE="rhel fedora"
[2026-01-27 17:03:36] VERSION_ID="7"
[2026-01-27 17:03:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 17:03:36] ANSI_COLOR="0;31"
[2026-01-27 17:03:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 17:03:36] HOME_URL="https://www.centos.org/"
[2026-01-27 17:03:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 17:03:36] 
[2026-01-27 17:03:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 17:03:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 17:03:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 17:03:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 17:03:36] 
[2026-01-27 17:03:36] 2026-01-27 16:02:49,827 | INFO     | **************************************
[2026-01-27 17:03:36] 2026-01-27 16:02:50,330 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2026-01-27 17:03:36] 2026-01-27 16:02:50,348 | INFO     | sufficient remaining disk space (694170943488 B)
[2026-01-27 17:03:36] 2026-01-27 16:02:50,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 17:03:36] 2026-01-27 16:02:50,349 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 17:03:36] 2026-01-27 16:02:50,349 | INFO     | update_server=False
[2026-01-27 17:03:36] 2026-01-27 16:02:50,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 17:03:36] 2026-01-27 16:02:50,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 17:03:36] 2026-01-27 16:02:50,726 | INFO     | all data control threads have been joined
[2026-01-27 17:03:36] 2026-01-27 16:02:51,355 | INFO     | [job] retrieve thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,399 | INFO     | [payload] failed_post thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,409 | INFO     | all payload control threads have been joined
[2026-01-27 17:03:36] 2026-01-27 16:02:51,429 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,429 | INFO     | [job] validate thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,637 | WARNING  | process 2549195 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 17:03:36] 2026-01-27 16:02:51,732 | INFO     | [data] control thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,827 | INFO     | [payload] validate_post thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:51,924 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:03:36] 2026-01-27 16:02:51,925 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 17:03:36] 2026-01-27 16:02:51,926 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 17:03:36] 2026-01-27 16:02:51,926 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 17:03:36] 2026-01-27 16:02:51,926 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6983304341/payload.stdout) since it has not been created yet
[2026-01-27 17:03:36] 2026-01-27 16:02:51,927 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2026-01-27 17:03:36] 2026-01-27 16:02:51,944 | INFO     | sufficient remaining disk space (694169894912 B)
[2026-01-27 17:03:36] 2026-01-27 16:02:51,944 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 17:03:36] 2026-01-27 16:02:51,945 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6983304341/HITS.48318042._000680.pool.root.1 since it does not exist
[2026-01-27 17:03:36] 2026-01-27 16:02:52,025 | INFO     | all job control threads have been joined
[2026-01-27 17:03:36] 2026-01-27 16:02:52,205 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:52,312 | INFO     | number of running child processes to parent process 2549195: 1
[2026-01-27 17:03:36] 2026-01-27 16:02:52,313 | INFO     | maximum number of monitored processes: 6
[2026-01-27 17:03:36] 2026-01-27 16:02:52,313 | INFO     | aborting job monitoring since job object (job id=6983304341) has expired
[2026-01-27 17:03:36] 2026-01-27 16:02:52,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:03:36] 2026-01-27 16:02:52,313 | INFO     | will abort loop
[2026-01-27 17:03:36] 2026-01-27 16:02:52,355 | INFO     | [data] copytool_out thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:52,414 | INFO     | [payload] control thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:52,708 | INFO     | [data] copytool_in thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:52,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:53,030 | INFO     | [job] control thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:53,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 17:03:36] 2026-01-27 16:02:53,318 | INFO     | [job] job monitor thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:53,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 17:03:36] 2026-01-27 16:02:54,243 | INFO     | [job] queue monitor thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:02:57,429 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:03:00,998 | INFO     | job.realtimelogging is not enabled
[2026-01-27 17:03:36] 2026-01-27 16:03:02,004 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 17:03:36] 2026-01-27 16:03:20,781 | INFO     | PID=2544467 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 17:03:36] 2026-01-27 16:03:20,782 | INFO     | .. there are 4 such processes running
[2026-01-27 17:03:36] 2026-01-27 16:03:20,782 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 17:03:36] 2026-01-27 16:03:20,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 17:03:36] 2026-01-27 16:03:20,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 17:03:36] 2026-01-27 16:03:30,805 | INFO     | [monitor] cgroup control has ended
[2026-01-27 17:03:36] 2026-01-27 16:03:31,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22443534554944)>', '<ExcThread(monitor, started 22443287901952)>']
[2026-01-27 17:03:36] 2026-01-27 16:03:31,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 17:03:36] 2026-01-27 16:03:31,838 | INFO     | [monitor] control thread has ended
[2026-01-27 17:03:36] 2026-01-27 16:03:36,206 | INFO     | all workflow threads have been joined
[2026-01-27 17:03:36] 2026-01-27 16:03:36,206 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 17:03:36] 2026-01-27 16:03:36,206 | INFO     | traces error code: 0
[2026-01-27 17:03:36] 2026-01-27 16:03:36,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 17:03:36] 2026-01-27 16:03:36,401 [wrapper] ==== pilot stdout END ====
[2026-01-27 17:03:36] 2026-01-27 16:03:36,404 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 17:03:36] 2026-01-27 16:03:36,407 [wrapper] pilotpid: 2544467
[2026-01-27 17:03:36] 2026-01-27 16:03:36,410 [wrapper] Pilot exit status: 0
[2026-01-27 17:03:36] 2026-01-27 16:03:36,420 [wrapper] pandaids: 6983304341
[2026-01-27 17:03:36] 2026-01-27 16:03:36,496 [wrapper] cleanup supervisor_pilot 2659008 2544468
[2026-01-27 17:03:36] 2026-01-27 16:03:36,500 [wrapper] Test setup, not cleaning
[2026-01-27 17:03:36] 2026-01-27 16:03:36,503 [wrapper] apfmon messages muted
[2026-01-27 17:03:36] 2026-01-27 16:03:36,505 [wrapper] ==== wrapper stdout END ====
[2026-01-27 17:03:36] 2026-01-27 16:03:36,508 [wrapper] ==== wrapper stderr END ====
[2026-01-27 17:03:36]  *** Error codes and diagnostics ***
[2026-01-27 17:03:36]     "exeErrorCode": 0,
[2026-01-27 17:03:36]     "exeErrorDiag": "",
[2026-01-27 17:03:36]     "pilotErrorCode": 0,
[2026-01-27 17:03:36]     "pilotErrorDiag": "",
[2026-01-27 17:03:36]  *** Listing of results directory ***
[2026-01-27 17:03:36] total 679912
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc    584422 Jan 25 17:28 pilot3.tar.gz
[2026-01-27 17:03:36] -rwx------ 1 boinc boinc     36322 Jan 25 17:29 runpilot2-wrapper.sh
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc      5111 Jan 25 17:30 queuedata.json
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc       100 Jan 27 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 17:03:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 13:35 run_atlas
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc       105 Jan 27 13:35 job.xml
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc      6639 Jan 27 13:35 init_data.xml
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc 499445370 Jan 27 13:35 EVNT.48318040._000014.pool.root.1
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:35 start_atlas.sh
[2026-01-27 17:03:36] drwxrwx--x 2 boinc boinc      4096 Jan 27 13:35 shared
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc    597763 Jan 27 13:35 input.tar.gz
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc         0 Jan 27 13:35 boinc_lockfile
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc      2530 Jan 27 13:35 pandaJob.out
[2026-01-27 17:03:36] -rw------- 1 boinc boinc   1002853 Jan 27 13:36 agis_schedconf.cvmfs.json
[2026-01-27 17:03:36] -rw------- 1 boinc boinc       451 Jan 27 13:36 workernode_map.json
[2026-01-27 17:03:36] drwx------ 5 boinc boinc      4096 Jan 27 13:36 pilot3
[2026-01-27 17:03:36] -rw------- 1 boinc boinc 188580073 Jan 27 17:02 HITS.48318042._000680.pool.root.1
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc       529 Jan 27 17:02 boinc_task_state.xml
[2026-01-27 17:03:36] -rw------- 1 boinc boinc        95 Jan 27 17:02 pilot_heartbeat.json
[2026-01-27 17:03:36] -rw------- 1 boinc boinc      1037 Jan 27 17:02 memory_monitor_summary.json
[2026-01-27 17:03:36] -rw------- 1 boinc boinc   1516246 Jan 27 17:02 agis_ddmendpoints.agis.ALL.json
[2026-01-27 17:03:36] -rw------- 1 boinc boinc    388932 Jan 27 17:02 log.48318042._000680.job.log.tgz.1
[2026-01-27 17:03:36] -rw------- 1 boinc boinc      6402 Jan 27 17:02 heartbeat.json
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc      8192 Jan 27 17:03 boinc_mmap_file
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc        27 Jan 27 17:03 wrapper_checkpoint.txt
[2026-01-27 17:03:36] -rw------- 1 boinc boinc      6442 Jan 27 17:03 pilotlog.txt
[2026-01-27 17:03:36] -rw------- 1 boinc boinc   1745398 Jan 27 17:03 log.48318042._000680.job.log.1
[2026-01-27 17:03:36] -rw------- 1 boinc boinc       357 Jan 27 17:03 output.list
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc       620 Jan 27 17:03 runtime_log
[2026-01-27 17:03:36] -rw------- 1 boinc boinc   2150400 Jan 27 17:03 result.tar.gz
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc      9205 Jan 27 17:03 runtime_log.err
[2026-01-27 17:03:36] -rw------- 1 boinc boinc       665 Jan 27 17:03 AF9MDmfAI48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiJ1KDmWq7wpn.diag
[2026-01-27 17:03:36] -rw-r--r-- 1 boinc boinc     21277 Jan 27 17:03 stderr.txt
[2026-01-27 17:03:36] HITS file was successfully produced:
[2026-01-27 17:03:36] -rw------- 1 boinc boinc 188580073 Jan 27 17:02 shared/HITS.pool.root.1
[2026-01-27 17:03:36]  *** Contents of shared directory: ***
[2026-01-27 17:03:36] total 674612
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc 499445370 Jan 27 13:35 ATLAS.root_0
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc     15845 Jan 27 13:35 start_atlas.sh
[2026-01-27 17:03:36] -rw-r--r-- 2 boinc boinc    597763 Jan 27 13:35 input.tar.gz
[2026-01-27 17:03:36] -rw------- 1 boinc boinc 188580073 Jan 27 17:02 HITS.pool.root.1
[2026-01-27 17:03:36] -rw------- 1 boinc boinc   2150400 Jan 27 17:03 result.tar.gz
17:03:37 (2540347): run_atlas exited; CPU time 48218.182436
17:03:37 (2540347): called boinc_finish(0)

</stderr_txt>
]]>

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