Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:44:23 (24678): wrapper (7.7.26015): starting
08:44:23 (24678): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 08:44:23] Arguments: --nthreads 8
[2026-01-26 08:44:23] Threads: 8
[2026-01-26 08:44:23] Checking for CVMFS
[2026-01-26 08:44:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 08:44:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 08:44:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 08:44:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 08:44:23] 2.11.2.0 28294 205613 140292 155548 2 52 15728970 18432000 1833 130560 0 136036422 99.980 7812385 29678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 08:44:23] CVMFS is ok
[2026-01-26 08:44:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 08:44:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 08:44:23] Further information can be found at the LHC@home message board.
[2026-01-26 08:44:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 08:44:23] Checking for apptainer binary...
[2026-01-26 08:44:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 08:44:23] Running /usr/bin/apptainer --version
[2026-01-26 08:44:23] apptainer version 1.3.2-1.el7
[2026-01-26 08:44:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 08:44:24] c-206-25.aglt2.org
[2026-01-26 08:44:24] apptainer works
[2026-01-26 08:44:24] Set ATHENA_PROC_NUMBER=8
[2026-01-26 08:44:24] Set ATHENA_CORE_NUMBER=8
[2026-01-26 08:44:24] Starting ATLAS job with PandaID=6981038962
[2026-01-26 08:44:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:01 (24678): BOINC client no longer exists - exiting
11:00:01 (24678): timer handler: client dead, exiting
11:12:40 (23609): wrapper (7.7.26015): starting
11:12:40 (23609): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 11:12:40] Arguments: --nthreads 8
[2026-01-26 11:12:40] Threads: 8
[2026-01-26 11:12:40] This job has been restarted, cleaning up previous attempt
[2026-01-26 11:12:40] Checking for CVMFS
[2026-01-26 11:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 11:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 11:12:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 11:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 11:12:40] 2.11.2.0 28294 205761 138600 155551 2 32 15742628 18432000 1 130560 0 136143304 99.980 7816554 29682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 11:12:40] CVMFS is ok
[2026-01-26 11:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 11:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 11:12:40] Further information can be found at the LHC@home message board.
[2026-01-26 11:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 11:12:40] Checking for apptainer binary...
[2026-01-26 11:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 11:12:40] Running /usr/bin/apptainer --version
[2026-01-26 11:12:40] apptainer version 1.3.2-1.el7
[2026-01-26 11:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 11:12:42] c-206-25.aglt2.org
[2026-01-26 11:12:42] apptainer works
[2026-01-26 11:12:42] Set ATHENA_PROC_NUMBER=8
[2026-01-26 11:12:42] Set ATHENA_CORE_NUMBER=8
[2026-01-26 11:12:42] Starting ATLAS job with PandaID=6981038962
[2026-01-26 11:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 14:30:22]  *** The last 200 lines of the pilot log: ***
[2026-01-26 14:30:22] 2026-01-26 19:30:01,596 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,596 | INFO     | log transfer has been attempted: DONE
[2026-01-26 14:30:22] 2026-01-26 19:30:01,596 | INFO     | job 6981038962 has finished - writing final server update
[2026-01-26 14:30:22] 2026-01-26 19:30:01,596 | INFO     | total number of processed events: 400 (read)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,599 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6981038962/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,599 | INFO     | extracted standard info from prmon json
[2026-01-26 14:30:22] 2026-01-26 19:30:01,600 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 14:30:22] 2026-01-26 19:30:01,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 14:30:22] 2026-01-26 19:30:01,600 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 14:30:22] 2026-01-26 19:30:01,600 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 14:30:22] 2026-01-26 19:30:01,603 | INFO     | fitting pss+swap vs Time
[2026-01-26 14:30:22] 2026-01-26 19:30:01,603 | INFO     | sum of square deviations: 2263977332.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,604 | INFO     | sum of deviations: 19901619781.999992
[2026-01-26 14:30:22] 2026-01-26 19:30:01,604 | INFO     | mean x: 1769449882.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,604 | INFO     | mean y: 2463858.505154639
[2026-01-26 14:30:22] 2026-01-26 19:30:01,604 | INFO     | intersect: -15551984624.392612
[2026-01-26 14:30:22] 2026-01-26 19:30:01,605 | INFO     | chi2: 2.169938917345736
[2026-01-26 14:30:22] 2026-01-26 19:30:01,605 | INFO     | sum of square deviations: 2093397390.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,606 | INFO     | sum of deviations: 32611938156.999996
[2026-01-26 14:30:22] 2026-01-26 19:30:01,606 | INFO     | mean x: 1769449730.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,606 | INFO     | mean y: 2474970.1005291007
[2026-01-26 14:30:22] 2026-01-26 19:30:01,606 | INFO     | intersect: -27562852780.059864
[2026-01-26 14:30:22] 2026-01-26 19:30:01,607 | INFO     | chi2: 1.3137318615670008
[2026-01-26 14:30:22] 2026-01-26 19:30:01,607 | INFO     | current chi2=1.3137318615670008 (change=39.45765703055114 %)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,607 | INFO     | sum of square deviations: 1931608310.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,608 | INFO     | sum of deviations: 31624139140.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,608 | INFO     | mean x: 1769449577.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,608 | INFO     | mean y: 2474038.7989130435
[2026-01-26 14:30:22] 2026-01-26 19:30:01,608 | INFO     | intersect: -28966815102.931347
[2026-01-26 14:30:22] 2026-01-26 19:30:01,608 | INFO     | chi2: 1.3141028750270634
[2026-01-26 14:30:22] 2026-01-26 19:30:01,609 | INFO     | current chi2=1.3141028750270634 (change=-0.02824118611388321 %)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,609 | INFO     | right removable region: 183
[2026-01-26 14:30:22] 2026-01-26 19:30:01,609 | INFO     | sum of square deviations: 2093397390.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,610 | INFO     | sum of deviations: -8862905269.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,610 | INFO     | mean x: 1769450035.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,610 | INFO     | mean y: 2489310.037037037
[2026-01-26 14:30:22] 2026-01-26 19:30:01,610 | INFO     | intersect: 7493884930.069665
[2026-01-26 14:30:22] 2026-01-26 19:30:01,610 | INFO     | chi2: 0.8787131160166758
[2026-01-26 14:30:22] 2026-01-26 19:30:01,611 | INFO     | current chi2=0.8787131160166758 (change=59.505168141252774 %)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,611 | INFO     | sum of square deviations: 1931608310.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | sum of deviations: -9588624922.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | mean x: 1769450187.5
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | mean y: 2489990.070652174
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | intersect: 8786151811.749601
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | chi2: 0.8784000355305737
[2026-01-26 14:30:22] 2026-01-26 19:30:01,612 | INFO     | current chi2=0.8784000355305737 (change=0.03562943131216248 %)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,613 | INFO     | left removable region: 20
[2026-01-26 14:30:22] 2026-01-26 19:30:01,613 | INFO     | sum of square deviations: 1342841922.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | sum of deviations: 2668298051.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | mean x: 1769450157.0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | mean y: 2502576.889570552
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | intersect: -3513488641.371445
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | chi2: 0.0011198970709644616
[2026-01-26 14:30:22] 2026-01-26 19:30:01,614 | INFO     | current memory leak: 1.99 B/s (using 163 data points, chi2=0.00)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | could have reported an average CPU frequency of 2450 MHz (10 samples)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | ..............................
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . Timing measurements:
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . get job = 0 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . initial setup = 1 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . payload setup = 6 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . stage-in = 0 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . payload execution = 11801 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,615 | INFO     | . stage-out = 2 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,616 | INFO     | . log creation = 0 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,616 | INFO     | ..............................
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | 
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | job summary report
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | --------------------------------------------------
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | PanDA job id: 6981038962
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | task id: 48318018
[2026-01-26 14:30:22] 2026-01-26 19:30:01,694 | INFO     | errors: (none)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | pilot state: finished 
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | transexitcode: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | exeerrorcode: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | exeerrordiag: 
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | exitcode: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | exitmsg: OK
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | cpuconsumptiontime: 91026 s
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | nevents: 400
[2026-01-26 14:30:22] 2026-01-26 19:30:01,695 | INFO     | neventsw: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | pid: 9509
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | pgrp: 9509
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | corecount: 8
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | event service: False
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | sizes: {0: 2283741, 1: 2284258, 12: 2284258, 11811: 2313619, 11814: 2322673, 11816: 2322811}
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | --------------------------------------------------
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | 
[2026-01-26 14:30:22] 2026-01-26 19:30:01,696 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-26 14:30:22] 2026-01-26 19:30:01,708 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,708 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,708 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 14:30:22] 2026-01-26 19:30:01,710 | INFO     | job 6981038962 has completed (purged errors)
[2026-01-26 14:30:22] 2026-01-26 19:30:01,711 | INFO     | overall cleanup function is called
[2026-01-26 14:30:22] 2026-01-26 19:30:02,718 | INFO     | --- collectZombieJob: --- 10, [9509]
[2026-01-26 14:30:22] 2026-01-26 19:30:02,718 | INFO     | zombie collector waiting for pid 9509
[2026-01-26 14:30:22] 2026-01-26 19:30:02,718 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 14:30:22] 2026-01-26 19:30:02,718 | INFO     | collected zombie processes
[2026-01-26 14:30:22] 2026-01-26 19:30:02,718 | INFO     | will attempt to kill all subprocesses of pid=9509
[2026-01-26 14:30:22] 2026-01-26 19:30:02,873 | INFO     | process IDs to be killed: [9509] (in reverse order)
[2026-01-26 14:30:22] 2026-01-26 19:30:02,929 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 14:30:22] 2026-01-26 19:30:02,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 14:30:22] 2026-01-26 19:30:02,932 | INFO     | did not find any defunct processes belonging to 9509
[2026-01-26 14:30:22] 2026-01-26 19:30:02,934 | INFO     | did not find any defunct processes belonging to 9509
[2026-01-26 14:30:22] 2026-01-26 19:30:02,934 | INFO     | ready for new job
[2026-01-26 14:30:22] 2026-01-26 19:30:02,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 14:30:22] 2026-01-26 19:30:02,936 | INFO     | **************************************
[2026-01-26 14:30:22] 2026-01-26 19:30:02,936 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 14:30:22] 2026-01-26 19:30:02,936 | INFO     | **************************************
[2026-01-26 14:30:22] 2026-01-26 19:30:02,936 | INFO     | 
[2026-01-26 14:30:22] 2026-01-26 19:30:02,937 | INFO     | architecture information:
[2026-01-26 14:30:22] 2026-01-26 19:30:02,937 | INFO     | executing command: cat /etc/os-release
[2026-01-26 14:30:22] 2026-01-26 19:30:02,951 | INFO     | cat /etc/os-release:
[2026-01-26 14:30:22] NAME="CentOS Linux"
[2026-01-26 14:30:22] VERSION="7 (Core)"
[2026-01-26 14:30:22] ID="centos"
[2026-01-26 14:30:22] ID_LIKE="rhel fedora"
[2026-01-26 14:30:22] VERSION_ID="7"
[2026-01-26 14:30:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 14:30:22] ANSI_COLOR="0;31"
[2026-01-26 14:30:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 14:30:22] HOME_URL="https://www.centos.org/"
[2026-01-26 14:30:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 14:30:22] 
[2026-01-26 14:30:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 14:30:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 14:30:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 14:30:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 14:30:22] 
[2026-01-26 14:30:22] 2026-01-26 19:30:02,951 | INFO     | **************************************
[2026-01-26 14:30:22] 2026-01-26 19:30:03,454 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 14:30:22] 2026-01-26 19:30:03,469 | INFO     | sufficient remaining disk space (27063746560 B)
[2026-01-26 14:30:22] 2026-01-26 19:30:03,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 14:30:22] 2026-01-26 19:30:03,469 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 14:30:22] 2026-01-26 19:30:03,469 | INFO     | update_server=False
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 14:30:22] 2026-01-26 19:30:03,470 | INFO     | aborting loop
[2026-01-26 14:30:22] 2026-01-26 19:30:03,471 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 14:30:22] 2026-01-26 19:30:03,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 14:30:22] 2026-01-26 19:30:03,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 14:30:22] 2026-01-26 19:30:03,628 | INFO     | all job control threads have been joined
[2026-01-26 14:30:22] 2026-01-26 19:30:03,661 | INFO     | all payload control threads have been joined
[2026-01-26 14:30:22] 2026-01-26 19:30:04,310 | INFO     | all data control threads have been joined
[2026-01-26 14:30:22] 2026-01-26 19:30:04,475 | INFO     | [job] retrieve thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,476 | INFO     | [job] queue monitor thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,477 | INFO     | [job] job monitor thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,633 | INFO     | [job] control thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,666 | INFO     | [payload] control thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,700 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,701 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:04,717 | INFO     | [job] validate thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,006 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,316 | INFO     | [data] control thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,392 | INFO     | [data] copytool_in thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,477 | INFO     | [data] copytool_out thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,652 | INFO     | [payload] validate_post thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,731 | INFO     | [payload] failed_post thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:05,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 14:30:22] 2026-01-26 19:30:09,765 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:13,230 | INFO     | [monitor] cgroup control has ended
[2026-01-26 14:30:22] 2026-01-26 19:30:14,274 | INFO     | job.realtimelogging is not enabled
[2026-01-26 14:30:22] 2026-01-26 19:30:15,280 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 14:30:22] 2026-01-26 19:30:16,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139815263352640)>', '<ExcThread(monitor, started 139814976337664)>']
[2026-01-26 14:30:22] 2026-01-26 19:30:17,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 14:30:22] 2026-01-26 19:30:17,544 | INFO     | [monitor] control thread has ended
[2026-01-26 14:30:22] 2026-01-26 19:30:21,980 | INFO     | all workflow threads have been joined
[2026-01-26 14:30:22] 2026-01-26 19:30:21,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 14:30:22] 2026-01-26 19:30:21,980 | INFO     | traces error code: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:21,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 14:30:22] 2026-01-26 19:30:22,109 [wrapper] ==== pilot stdout END ====
[2026-01-26 14:30:22] 2026-01-26 19:30:22,112 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 14:30:22] 2026-01-26 19:30:22,114 [wrapper] pilotpid: 2321
[2026-01-26 14:30:22] 2026-01-26 19:30:22,117 [wrapper] Pilot exit status: 0
[2026-01-26 14:30:22] 2026-01-26 19:30:22,127 [wrapper] pandaids: 6981038962 6981038962
[2026-01-26 14:30:22] 2026-01-26 19:30:22,166 [wrapper] cleanup supervisor_pilot  1944 2322
[2026-01-26 14:30:22] 2026-01-26 19:30:22,169 [wrapper] Test setup, not cleaning
[2026-01-26 14:30:22] 2026-01-26 19:30:22,171 [wrapper] apfmon messages muted
[2026-01-26 14:30:22] 2026-01-26 19:30:22,173 [wrapper] ==== wrapper stdout END ====
[2026-01-26 14:30:22] 2026-01-26 19:30:22,174 [wrapper] ==== wrapper stderr END ====
[2026-01-26 14:30:22]  *** Error codes and diagnostics ***
[2026-01-26 14:30:22]     "exeErrorCode": 0,
[2026-01-26 14:30:22]     "exeErrorDiag": "",
[2026-01-26 14:30:22]     "pilotErrorCode": 0,
[2026-01-26 14:30:22]     "pilotErrorDiag": "",
[2026-01-26 14:30:22]  *** Listing of results directory ***
[2026-01-26 14:30:22] total 1155288
[2026-01-26 14:30:22] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas    584422 Jan 24 06:54 pilot3.tar.gz
[2026-01-26 14:30:22] -rwx------ 1 boincer umatlas     36322 Jan 24 06:57 runpilot2-wrapper.sh
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas      5111 Jan 24 07:00 queuedata.json
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas       100 Jan 26 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 14:30:22] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 08:44 run_atlas
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas       105 Jan 26 08:44 job.xml
[2026-01-26 14:30:22] -rw-r--r-- 3 boincer umatlas 494657724 Jan 26 08:44 EVNT.48318016._000002.pool.root.1
[2026-01-26 14:30:22] -rw-r--r-- 3 boincer umatlas 494657724 Jan 26 08:44 ATLAS.root_0
[2026-01-26 14:30:22] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 08:44 start_atlas.sh
[2026-01-26 14:30:22] drwxrwx--x 2 boincer umatlas      4096 Jan 26 08:44 shared
[2026-01-26 14:30:22] -rw-r--r-- 2 boincer umatlas    597750 Jan 26 08:44 input.tar.gz
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas         0 Jan 26 08:44 boinc_lockfile
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas      2516 Jan 26 11:12 pandaJob.out
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas        57 Jan 26 11:12 setup.sh.local
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas   1002189 Jan 26 11:12 agis_schedconf.cvmfs.json
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas       435 Jan 26 11:12 workernode_map.json
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 14:29 init_data.xml
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas        96 Jan 26 14:29 pilot_heartbeat.json
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas 185552559 Jan 26 14:29 HITS.48318018._000275.pool.root.1
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas       532 Jan 26 14:29 boinc_task_state.xml
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas      1046 Jan 26 14:29 memory_monitor_summary.json
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas   1516246 Jan 26 14:29 agis_ddmendpoints.agis.ALL.json
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas    444803 Jan 26 14:29 log.48318018._000275.job.log.tgz.1
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas      6404 Jan 26 14:30 heartbeat.json
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 14:30 boinc_mmap_file
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas        29 Jan 26 14:30 wrapper_checkpoint.txt
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas      4620 Jan 26 14:30 pilotlog.txt
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas   1657669 Jan 26 14:30 log.48318018._000275.job.log.1
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas       357 Jan 26 14:30 output.list
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas       620 Jan 26 14:30 runtime_log
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas   2119680 Jan 26 14:30 result.tar.gz
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas      9427 Jan 26 14:30 runtime_log.err
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas       786 Jan 26 14:30 H9VNDm6Rr38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7ayKDmOhLuLn.diag
[2026-01-26 14:30:22] -rw-r--r-- 1 boincer umatlas     23197 Jan 26 14:30 stderr.txt
[2026-01-26 14:30:22] HITS file was successfully produced:
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas 185552559 Jan 26 14:29 shared/HITS.pool.root.1
[2026-01-26 14:30:22]  *** Contents of shared directory: ***
[2026-01-26 14:30:22] total 666948
[2026-01-26 14:30:22] -rw-r--r-- 3 boincer umatlas 494657724 Jan 26 08:44 ATLAS.root_0
[2026-01-26 14:30:22] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 08:44 start_atlas.sh
[2026-01-26 14:30:22] -rw-r--r-- 2 boincer umatlas    597750 Jan 26 08:44 input.tar.gz
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas 185552559 Jan 26 14:29 HITS.pool.root.1
[2026-01-26 14:30:22] -rw------- 1 boincer umatlas   2119680 Jan 26 14:30 result.tar.gz
14:30:23 (23609): run_atlas exited; CPU time 91175.057214
14:30:23 (23609): called boinc_finish(0)

</stderr_txt>
]]>

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