Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:51:16 (1205225): wrapper (7.7.26015): starting
06:51:16 (1205225): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 06:51:16] Arguments: --nthreads 3
[2026-01-27 06:51:16] Threads: 3
[2026-01-27 06:51:16] Checking for CVMFS
[2026-01-27 06:51:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 06:51:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 06:51:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 06:51:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 06:51:17] 2.9.2.0 3955128 9401 88300 155574 1 50 16408810 36864000 0 130560 0 4126116 99.986 302884 5906 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 06:51:17] CVMFS is ok
[2026-01-27 06:51:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 06:51:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 06:51:17] Further information can be found at the LHC@home message board.
[2026-01-27 06:51:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 06:51:17] Checking for apptainer binary...
[2026-01-27 06:51:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 06:51:17] Running /usr/bin/apptainer --version
[2026-01-27 06:51:17] apptainer version 1.4.1-1.1
[2026-01-27 06:51:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 06:51:17] thA332
[2026-01-27 06:51:17] apptainer works
[2026-01-27 06:51:17] Set ATHENA_PROC_NUMBER=3
[2026-01-27 06:51:17] Set ATHENA_CORE_NUMBER=3
[2026-01-27 06:51:17] Starting ATLAS job with PandaID=6982919579
[2026-01-27 06:51:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 08:14:48]  *** The last 200 lines of the pilot log: ***
[2026-01-27 08:14:48] 2026-01-27 07:14:17,089 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 08:14:48] 2026-01-27 07:14:17,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 08:14:48] 2026-01-27 07:14:17,089 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 08:14:48] 2026-01-27 07:14:17,089 | INFO     | job 6982919579 has completed (purged errors)
[2026-01-27 08:14:48] 2026-01-27 07:14:17,089 | INFO     | overall cleanup function is called
[2026-01-27 08:14:48] 2026-01-27 07:14:18,096 | INFO     | --- collectZombieJob: --- 10, [1213689]
[2026-01-27 08:14:48] 2026-01-27 07:14:18,096 | INFO     | zombie collector waiting for pid 1213689
[2026-01-27 08:14:48] 2026-01-27 07:14:18,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 08:14:48] 2026-01-27 07:14:18,096 | INFO     | collected zombie processes
[2026-01-27 08:14:48] 2026-01-27 07:14:18,096 | INFO     | will attempt to kill all subprocesses of pid=1213689
[2026-01-27 08:14:48] 2026-01-27 07:14:18,138 | INFO     | process IDs to be killed: [1213689] (in reverse order)
[2026-01-27 08:14:48] 2026-01-27 07:14:18,162 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 08:14:48] 2026-01-27 07:14:18,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 08:14:48] 2026-01-27 07:14:18,163 | INFO     | did not find any defunct processes belonging to 1213689
[2026-01-27 08:14:48] 2026-01-27 07:14:18,164 | INFO     | did not find any defunct processes belonging to 1213689
[2026-01-27 08:14:48] 2026-01-27 07:14:18,164 | INFO     | ready for new job
[2026-01-27 08:14:48] 2026-01-27 07:14:18,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 08:14:48] 2026-01-27 07:14:18,165 | INFO     | **************************************
[2026-01-27 08:14:48] 2026-01-27 07:14:18,165 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 08:14:48] 2026-01-27 07:14:18,165 | INFO     | **************************************
[2026-01-27 08:14:48] 2026-01-27 07:14:18,165 | INFO     | 
[2026-01-27 08:14:48] 2026-01-27 07:14:18,166 | INFO     | architecture information:
[2026-01-27 08:14:48] 2026-01-27 07:14:18,166 | INFO     | executing command: cat /etc/os-release
[2026-01-27 08:14:48] 2026-01-27 07:14:18,174 | INFO     | cat /etc/os-release:
[2026-01-27 08:14:48] NAME="CentOS Linux"
[2026-01-27 08:14:48] VERSION="7 (Core)"
[2026-01-27 08:14:48] ID="centos"
[2026-01-27 08:14:48] ID_LIKE="rhel fedora"
[2026-01-27 08:14:48] VERSION_ID="7"
[2026-01-27 08:14:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 08:14:48] ANSI_COLOR="0;31"
[2026-01-27 08:14:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 08:14:48] HOME_URL="https://www.centos.org/"
[2026-01-27 08:14:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 08:14:48] 
[2026-01-27 08:14:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 08:14:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 08:14:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 08:14:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 08:14:48] 
[2026-01-27 08:14:48] 2026-01-27 07:14:18,174 | INFO     | **************************************
[2026-01-27 08:14:48] 2026-01-27 07:14:18,678 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 08:14:48] 2026-01-27 07:14:18,690 | INFO     | sufficient remaining disk space (239700279296 B)
[2026-01-27 08:14:48] 2026-01-27 07:14:18,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 08:14:48] 2026-01-27 07:14:18,690 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 08:14:48] 2026-01-27 07:14:18,690 | INFO     | update_server=False
[2026-01-27 08:14:48] 2026-01-27 07:14:18,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 08:14:48] 2026-01-27 07:14:18,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 08:14:48] 2026-01-27 07:14:18,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 08:14:48] 2026-01-27 07:14:18,691 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:14:48] 2026-01-27 07:14:18,691 | INFO     | aborting loop
[2026-01-27 08:14:48] 2026-01-27 07:14:19,185 | INFO     | all payload control threads have been joined
[2026-01-27 08:14:48] 2026-01-27 07:14:19,264 | INFO     | all job control threads have been joined
[2026-01-27 08:14:48] 2026-01-27 07:14:19,354 | INFO     | all data control threads have been joined
[2026-01-27 08:14:48] 2026-01-27 07:14:19,696 | INFO     | [job] retrieve thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:19,696 | INFO     | [job] job monitor thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:19,810 | INFO     | job.realtimelogging is not enabled
[2026-01-27 08:14:48] 2026-01-27 07:14:19,839 | INFO     | [data] copytool_in thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,190 | INFO     | [payload] control thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,191 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,269 | INFO     | [job] control thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,359 | INFO     | [data] control thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,517 | INFO     | [payload] validate_post thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,696 | INFO     | [data] copytool_out thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:20,815 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:21,071 | INFO     | [job] validate thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:21,190 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:21,190 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:21,291 | INFO     | [payload] failed_post thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:21,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 08:14:48] 2026-01-27 07:14:22,697 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:22,697 | INFO     | [job] queue monitor thread has finished
[2026-01-27 08:14:48] 2026-01-27 07:14:33,416 | INFO     | [monitor] cgroup control has ended
[2026-01-27 08:14:48] 2026-01-27 07:14:34,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808476530496)>', '<ExcThread(monitor, started 139808131233536)>']
[2026-01-27 08:14:48] 2026-01-27 07:14:39,761 | INFO     | all workflow threads have been joined
[2026-01-27 08:14:48] 2026-01-27 07:14:39,761 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 08:14:48] 2026-01-27 07:14:39,761 | INFO     | traces error code: 0
[2026-01-27 08:14:48] 2026-01-27 07:14:39,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 08:14:48] 2026-01-27 07:14:48,255 | INFO     | PID=1209268 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | CRITICAL | thread 'MainThread' is not alive
[2026-01-27 08:14:48] 2026-01-27 07:14:48,256 | INFO     | [monitor] control thread has ended
[2026-01-27 08:14:48] 2026-01-27 07:14:48,302 [wrapper] ==== pilot stdout END ====
[2026-01-27 08:14:48] 2026-01-27 07:14:48,304 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 08:14:48] 2026-01-27 07:14:48,306 [wrapper] pilotpid: 1209268
[2026-01-27 08:14:48] 2026-01-27 07:14:48,309 [wrapper] Pilot exit status: 0
[2026-01-27 08:14:48] 2026-01-27 07:14:48,316 [wrapper] pandaids: 6982919579
[2026-01-27 08:14:48] 2026-01-27 07:14:48,331 [wrapper] cleanup supervisor_pilot 1218773 1209269
[2026-01-27 08:14:48] 2026-01-27 07:14:48,333 [wrapper] Test setup, not cleaning
[2026-01-27 08:14:48] 2026-01-27 07:14:48,336 [wrapper] apfmon messages muted
[2026-01-27 08:14:48] 2026-01-27 07:14:48,338 [wrapper] ==== wrapper stdout END ====
[2026-01-27 08:14:48] 2026-01-27 07:14:48,340 [wrapper] ==== wrapper stderr END ====
[2026-01-27 08:14:48]  *** Error codes and diagnostics ***
[2026-01-27 08:14:48]     "exeErrorCode": 0,
[2026-01-27 08:14:48]     "exeErrorDiag": "",
[2026-01-27 08:14:48]     "pilotErrorCode": 0,
[2026-01-27 08:14:48]     "pilotErrorDiag": "",
[2026-01-27 08:14:48]  *** Listing of results directory ***
[2026-01-27 08:14:48] total 672400
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc    584422 Jan 25 10:42 pilot3.tar.gz
[2026-01-27 08:14:48] -rwx------ 1 boinc boinc     36322 Jan 25 10:46 runpilot2-wrapper.sh
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc      5111 Jan 25 10:50 queuedata.json
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc       100 Jan 27 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 08:14:48] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 06:51 run_atlas
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc       105 Jan 27 06:51 job.xml
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc 501778631 Jan 27 06:51 EVNT.48310721._000155.pool.root.1
[2026-01-27 08:14:48] drwxrwx--x 2 boinc boinc      4096 Jan 27 06:51 shared
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc    597766 Jan 27 06:51 input.tar.gz
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc     15845 Jan 27 06:51 start_atlas.sh
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc         0 Jan 27 06:51 boinc_setup_complete
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc      6439 Jan 27 06:51 init_data.xml
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc         0 Jan 27 06:51 boinc_lockfile
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc      2533 Jan 27 06:51 pandaJob.out
[2026-01-27 08:14:48] -rw------- 1 boinc boinc   1004335 Jan 27 06:51 agis_schedconf.cvmfs.json
[2026-01-27 08:14:48] -rw------- 1 boinc boinc   1516246 Jan 27 06:51 agis_ddmendpoints.agis.ALL.json
[2026-01-27 08:14:48] -rw------- 1 boinc boinc       427 Jan 27 06:51 workernode_map.json
[2026-01-27 08:14:48] drwx------ 5 boinc boinc      4096 Jan 27 06:51 pilot3
[2026-01-27 08:14:48] -rw------- 1 boinc boinc        95 Jan 27 08:13 pilot_heartbeat.json
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc       530 Jan 27 08:13 boinc_task_state.xml
[2026-01-27 08:14:48] -rw------- 1 boinc boinc 180879826 Jan 27 08:13 HITS.48310724._007708.pool.root.1
[2026-01-27 08:14:48] -rw------- 1 boinc boinc      1016 Jan 27 08:14 memory_monitor_summary.json
[2026-01-27 08:14:48] -rw------- 1 boinc boinc    248481 Jan 27 08:14 log.48310724._007708.job.log.tgz.1
[2026-01-27 08:14:48] -rw------- 1 boinc boinc      6305 Jan 27 08:14 heartbeat.json
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc      8192 Jan 27 08:14 boinc_mmap_file
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc        27 Jan 27 08:14 wrapper_checkpoint.txt
[2026-01-27 08:14:48] -rw------- 1 boinc boinc       817 Jan 27 08:14 pilotlog.txt
[2026-01-27 08:14:48] -rw------- 1 boinc boinc    728552 Jan 27 08:14 log.48310724._007708.job.log.1
[2026-01-27 08:14:48] -rw------- 1 boinc boinc       357 Jan 27 08:14 output.list
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc       620 Jan 27 08:14 runtime_log
[2026-01-27 08:14:48] -rw------- 1 boinc boinc    993280 Jan 27 08:14 result.tar.gz
[2026-01-27 08:14:48] -rw------- 1 boinc boinc       657 Jan 27 08:14 uunNDm7rB48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHM7KDmjw5J3n.diag
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc      8896 Jan 27 08:14 runtime_log.err
[2026-01-27 08:14:48] -rw-r--r-- 1 boinc boinc     11293 Jan 27 08:14 stderr.txt
[2026-01-27 08:14:48] HITS file was successfully produced:
[2026-01-27 08:14:48] -rw------- 1 boinc boinc 180879826 Jan 27 08:13 shared/HITS.pool.root.1
[2026-01-27 08:14:48]  *** Contents of shared directory: ***
[2026-01-27 08:14:48] total 668244
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc 501778631 Jan 27 06:51 ATLAS.root_0
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc    597766 Jan 27 06:51 input.tar.gz
[2026-01-27 08:14:48] -rw-r--r-- 2 boinc boinc     15845 Jan 27 06:51 start_atlas.sh
[2026-01-27 08:14:48] -rw------- 1 boinc boinc 180879826 Jan 27 08:13 HITS.pool.root.1
[2026-01-27 08:14:48] -rw------- 1 boinc boinc    993280 Jan 27 08:14 result.tar.gz
08:14:49 (1205225): run_atlas exited; CPU time 14133.017898
08:14:49 (1205225): called boinc_finish(0)

</stderr_txt>
]]>

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