Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-27 12:25:36 (12704): vboxwrapper version 26210
2026-01-27 12:25:36 (12704): BOINC client version: 8.2.8
2026-01-27 12:25:36 (12704): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-01-27 12:25:37 (12704): Successfully copied 'init_data.xml' to the shared directory.
2026-01-27 12:25:37 (12704): Create VM. (boinc_c940e51c5f19253d, slot#0)
2026-01-27 12:25:37 (12704): Setting Memory Size for VM. (4500MB)
2026-01-27 12:25:38 (12704): Setting CPU Count for VM. (5)
2026-01-27 12:25:38 (12704): Setting Chipset Options for VM.
2026-01-27 12:25:38 (12704): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-27 12:25:38 (12704): Setting Boot Options for VM.
2026-01-27 12:25:39 (12704): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-27 12:25:39 (12704): Enabling VM Network Access.
2026-01-27 12:25:40 (12704): Disabling USB Support for VM.
2026-01-27 12:25:40 (12704): Disabling COM Port Support for VM.
2026-01-27 12:25:40 (12704): Disabling LPT Port Support for VM.
2026-01-27 12:25:40 (12704): Disabling Audio Support for VM.
2026-01-27 12:25:41 (12704): Disabling Clipboard Support for VM.
2026-01-27 12:25:41 (12704): Disabling Drag and Drop Support for VM.
2026-01-27 12:25:41 (12704): Adding storage controller(s) to VM.
2026-01-27 12:25:41 (12704): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-27 12:25:43 (12704): Adding VirtualBox Guest Additions to VM.
2026-01-27 12:25:44 (12704): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-27 12:25:44 (12704): forwarding host port 54823 to guest port 80
2026-01-27 12:25:44 (12704): Enabling remote desktop for VM.
2026-01-27 12:25:45 (12704): Required extension pack not installed, remote desktop not enabled.
2026-01-27 12:25:45 (12704): Enabling shared directory for VM.
2026-01-27 12:25:45 (12704): Starting VM using VBoxManage interface. (boinc_c940e51c5f19253d, slot#0)
2026-01-27 12:25:51 (12704): Successfully started VM. (PID = '20852')
2026-01-27 12:25:51 (12704): Reporting VM Process ID to BOINC.
2026-01-27 12:25:51 (12704): Guest Log: BIOS: VirtualBox 7.0.6
2026-01-27 12:25:51 (12704): Guest Log: CPUID EDX: 0x178bfbff
2026-01-27 12:25:51 (12704): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-27 12:25:51 (12704): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-27 12:25:51 (12704): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-27 12:25:51 (12704): Detected: Web Application Enabled (http://localhost:54823)
2026-01-27 12:25:51 (12704): Preference change detected
2026-01-27 12:25:51 (12704): Setting CPU throttle for VM. (45%)
2026-01-27 12:25:51 (12704): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 360 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-27 12:25:53 (12704): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-27 12:25:53 (12704): Guest Log: BIOS: Booting from Hard Disk...
2026-01-27 12:25:56 (12704): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-27 12:25:56 (12704): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-27 12:25:56 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-27 12:25:57 (12704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-27 12:26:31 (12704): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-27 12:26:31 (12704): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-27 12:26:46 (12704): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000136 main     Log opened 2026-01-27T12:26:44.491539000Z
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000249 main     OS Product: Linux
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000282 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000307 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000332 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000332 main     Process ID: 1326
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000333 main     Package type: LINUX_64BITS_GENERIC
2026-01-27 12:26:46 (12704): Guest Log: 00:00:00.000978 main     5.2.32 r132073 started. Verbose level = 0
2026-01-27 12:26:46 (12704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-27 12:26:46 (12704): Guest Log: [INFO] Mounting shared directory
2026-01-27 12:26:46 (12704): Guest Log: [INFO] Checking for init_data.xml
2026-01-27 12:26:53 (12704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-27 12:26:53 (12704): Guest Log: [INFO] Detected branch: prod
2026-01-27 12:26:53 (12704): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-27 12:26:53 (12704): Guest Log: Copying input files
2026-01-27 12:26:56 (12704): Guest Log: 00:00:10.002343 timesync vgsvcTimeSyncWorker: Radical guest time change: 17 974 692 784 000ns (GuestNow=1 769 534 779 186 233 000 ns GuestLast=1 769 516 804 493 449 000 ns fSetTimeLastLoop=true )
2026-01-27 12:27:03 (12704): Guest Log: Copied input files into RunAtlas.
2026-01-27 12:27:03 (12704): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-27 12:27:03 (12704): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-27 12:27:03 (12704): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-27 12:27:03 (12704): Guest Log: Further information can be found at the LHC@home message board.
2026-01-27 12:27:13 (12704): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-27 12:27:14 (12704): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-27 12:27:14 (12704): Guest Log: 2.6.3.0 1605 0 30176 155594 4 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-27 12:27:16 (12704): Guest Log: copied the webapp to /var/www
2026-01-27 12:27:16 (12704): Guest Log: ATHENA_PROC_NUMBER=5
2026-01-27 12:27:16 (12704): Guest Log: ATHENA_CORE_NUMBER=5
2026-01-27 12:27:16 (12704): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-27 12:27:16 (12704): Guest Log:  *** Starting ATLAS job. (PandaID=6981996796 taskID=48318034) ***
2026-01-27 14:05:52 (12704): Status Report: Elapsed Time: '6000.000000'
2026-01-27 14:05:52 (12704): Status Report: CPU Time: '12153.875000'
2026-01-27 15:45:53 (12704): Status Report: Elapsed Time: '12000.000000'
2026-01-27 15:45:53 (12704): Status Report: CPU Time: '25786.906250'
2026-01-27 17:25:55 (12704): Status Report: Elapsed Time: '18000.000000'
2026-01-27 17:25:55 (12704): Status Report: CPU Time: '39412.062500'
2026-01-27 17:31:53 (12704): Guest Log:  *** Job finished ***
2026-01-27 17:31:53 (12704): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:30:56,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:30:56,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:16,295 | INFO     | [monitor] cgroup control has ended
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:18,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530033002304)>', '<ExcThread(monitor, started 140529358587648)>']
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:18,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:18,955 | INFO     | [monitor] control thread has ended
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,447 | INFO     | all workflow threads have been joined
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,448 | INFO     | end of generic workflow (traces error code: 0)
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,448 | INFO     | traces error code: 0
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,649 [wrapper] ==== pilot stdout END ====
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,654 [wrapper] ==== wrapper stdout RESUME ====
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,659 [wrapper] pilotpid: 6030
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,664 [wrapper] Pilot exit status: 0
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,739 [wrapper] pandaids: 6981996796
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,788 [wrapper] cleanup supervisor_pilot 29639 6031
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,793 [wrapper] Test setup, not cleaning
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,799 [wrapper] apfmon messages muted
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,804 [wrapper] ==== wrapper stdout END ====
2026-01-27 17:31:53 (12704): Guest Log: 2026-01-27 22:31:23,809 [wrapper] ==== wrapper stderr END ====
2026-01-27 17:31:53 (12704): Guest Log:  *** Error codes and diagnostics ***
2026-01-27 17:31:53 (12704): Guest Log:     "exeErrorCode": 0,
2026-01-27 17:31:53 (12704): Guest Log:     "exeErrorDiag": "",
2026-01-27 17:31:53 (12704): Guest Log:     "pilotErrorCode": 0,
2026-01-27 17:31:53 (12704): Guest Log:     "pilotErrorDiag": "",
2026-01-27 17:31:53 (12704): Guest Log:  *** Listing of results directory ***
2026-01-27 17:31:53 (12704): Guest Log: total 189572
2026-01-27 17:31:53 (12704): Guest Log: -rw-r--r--. 1 atlas atlas    584422 Jan 24 21:51 pilot3.tar.gz
2026-01-27 17:31:53 (12704): Guest Log: -rwx------. 1 atlas atlas     36322 Jan 24 21:53 runpilot2-wrapper.sh
2026-01-27 17:31:53 (12704): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jan 24 21:54 queuedata.json
2026-01-27 17:31:53 (12704): Guest Log: -rwxr-xr-x. 1 atlas atlas      8602 Jan 27 17:26 init_data.xml
2026-01-27 17:31:53 (12704): Guest Log: -rwxr-xr-x. 1 atlas atlas    597764 Jan 27 17:26 input.tar.gz
2026-01-27 17:31:53 (12704): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Jan 27 17:26 start_atlas.sh
2026-01-27 17:31:53 (12704): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 27 17:26 EVNT.48318032._000008.pool.root.1 -> /data/./ATLAS.root_0
2026-01-27 17:31:53 (12704): Guest Log: -rw-r--r--. 1 atlas atlas      2530 Jan 27 17:26 pandaJob.out
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas   1005228 Jan 27 17:27 agis_schedconf.cvmfs.json
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas       431 Jan 27 17:27 workernode_map.json
2026-01-27 17:31:53 (12704): Guest Log: drwx------. 5 atlas atlas      4096 Jan 27 17:27 pilot3
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas 184472864 Jan 27 22:29 HITS.48318034._000278.pool.root.1
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas        95 Jan 27 22:30 pilot_heartbeat.json
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas      1028 Jan 27 22:30 memory_monitor_summary.json
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas   1516246 Jan 27 22:30 agis_ddmendpoints.agis.ALL.json
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas    479725 Jan 27 22:30 log.48318034._000278.job.log.tgz.1
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas      6345 Jan 27 22:30 heartbeat.json
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas      4801 Jan 27 22:31 pilotlog.txt
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas   2406231 Jan 27 22:31 log.48318034._000278.job.log.1
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas       357 Jan 27 22:31 output.list
2026-01-27 17:31:53 (12704): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 27 22:31 runtime_log
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas   2908160 Jan 27 22:31 result.tar.gz
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas       659 Jan 27 22:31 ViBNDmXk038n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlRzKDmgHizUm.diag
2026-01-27 17:31:53 (12704): Guest Log: -rw-r--r--. 1 atlas atlas      8755 Jan 27 22:31 runtime_log.err
2026-01-27 17:31:53 (12704): Guest Log: Looking for outputfile HITS.48318034._000278.pool.root.1
2026-01-27 17:31:53 (12704): Guest Log: HITS file was successfully produced
2026-01-27 17:31:53 (12704): Guest Log: -rw-------. 1 atlas atlas 184472864 Jan 27 22:29 /home/atlas/RunAtlas/HITS.48318034._000278.pool.root.1
2026-01-27 17:31:55 (12704): Guest Log: Successfully finished the ATLAS job!
2026-01-27 17:31:55 (12704): Guest Log: Copying the results back to the shared directory!
2026-01-27 17:31:55 (12704): Guest Log:  *** Contents of shared directory: ***
2026-01-27 17:31:55 (12704): Guest Log: total 669900
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root 497963442 Jan 27 17:25 ATLAS.root_0
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root 184472864 Jan 27  2026 HITS.pool.root.1
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root      8602 Jan 27 17:25 init_data.xml
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root    597764 Jan 26 13:37 input.tar.gz
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root   2908160 Jan 27  2026 result.tar.gz
2026-01-27 17:31:55 (12704): Guest Log: -rwxrwxrwx. 1 root root     15845 Jan 26 13:37 start_atlas.sh
2026-01-27 17:31:55 (12704): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-27 17:31:55 (12704): VM Completion File Detected.
2026-01-27 17:31:55 (12704): Powering off VM.
2026-01-27 17:31:56 (12704): Successfully stopped VM.
2026-01-27 17:31:56 (12704): Deregistering VM. (boinc_c940e51c5f19253d, slot#0)
2026-01-27 17:31:56 (12704): Removing network bandwidth throttle group from VM.
2026-01-27 17:31:56 (12704): Removing VM from VirtualBox.
2026-01-27 17:32:02 (12704): called boinc_finish(0)

</stderr_txt>
]]>

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