Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:08 (1653242): wrapper (7.7.26015): starting
00:27:08 (1653242): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 00:27:08] Arguments: --nthreads 4
[2026-01-27 00:27:08] Threads: 4
[2026-01-27 00:27:08] Checking for CVMFS
[2026-01-27 00:27:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 00:27:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 00:27:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 00:27:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 00:27:08] 2.9.2.0 41542 9111 109988 155566 2 50 22707271 36864001 0 130560 0 4557005 99.988 293881 6589 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 00:27:08] CVMFS is ok
[2026-01-27 00:27:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 00:27:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 00:27:08] Further information can be found at the LHC@home message board.
[2026-01-27 00:27:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 00:27:08] Checking for apptainer binary...
[2026-01-27 00:27:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 00:27:08] Running /usr/bin/apptainer --version
[2026-01-27 00:27:08] apptainer version 1.4.1-1.1
[2026-01-27 00:27:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 00:27:08] thA332a
[2026-01-27 00:27:08] apptainer works
[2026-01-27 00:27:08] Set ATHENA_PROC_NUMBER=4
[2026-01-27 00:27:08] Set ATHENA_CORE_NUMBER=4
[2026-01-27 00:27:09] Starting ATLAS job with PandaID=6983458307
[2026-01-27 00:27:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 03:07:00]  *** The last 200 lines of the pilot log: ***
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | job 6983458307 has completed (purged errors)
[2026-01-27 03:07:00] 2026-01-27 02:06:29,000 | INFO     | overall cleanup function is called
[2026-01-27 03:07:00] 2026-01-27 02:06:30,004 | INFO     | --- collectZombieJob: --- 10, [1661873]
[2026-01-27 03:07:00] 2026-01-27 02:06:30,004 | INFO     | zombie collector waiting for pid 1661873
[2026-01-27 03:07:00] 2026-01-27 02:06:30,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 03:07:00] 2026-01-27 02:06:30,004 | INFO     | collected zombie processes
[2026-01-27 03:07:00] 2026-01-27 02:06:30,004 | INFO     | will attempt to kill all subprocesses of pid=1661873
[2026-01-27 03:07:00] 2026-01-27 02:06:30,046 | INFO     | process IDs to be killed: [1661873] (in reverse order)
[2026-01-27 03:07:00] 2026-01-27 02:06:30,080 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 03:07:00] 2026-01-27 02:06:30,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 03:07:00] 2026-01-27 02:06:30,082 | INFO     | did not find any defunct processes belonging to 1661873
[2026-01-27 03:07:00] 2026-01-27 02:06:30,083 | INFO     | did not find any defunct processes belonging to 1661873
[2026-01-27 03:07:00] 2026-01-27 02:06:30,084 | INFO     | ready for new job
[2026-01-27 03:07:00] 2026-01-27 02:06:30,084 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 03:07:00] 2026-01-27 02:06:30,084 | INFO     | **************************************
[2026-01-27 03:07:00] 2026-01-27 02:06:30,085 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 03:07:00] 2026-01-27 02:06:30,085 | INFO     | **************************************
[2026-01-27 03:07:00] 2026-01-27 02:06:30,085 | INFO     | 
[2026-01-27 03:07:00] 2026-01-27 02:06:30,085 | INFO     | architecture information:
[2026-01-27 03:07:00] 2026-01-27 02:06:30,085 | INFO     | executing command: cat /etc/os-release
[2026-01-27 03:07:00] 2026-01-27 02:06:30,100 | INFO     | cat /etc/os-release:
[2026-01-27 03:07:00] NAME="CentOS Linux"
[2026-01-27 03:07:00] VERSION="7 (Core)"
[2026-01-27 03:07:00] ID="centos"
[2026-01-27 03:07:00] ID_LIKE="rhel fedora"
[2026-01-27 03:07:00] VERSION_ID="7"
[2026-01-27 03:07:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 03:07:00] ANSI_COLOR="0;31"
[2026-01-27 03:07:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 03:07:00] HOME_URL="https://www.centos.org/"
[2026-01-27 03:07:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 03:07:00] 
[2026-01-27 03:07:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 03:07:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 03:07:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 03:07:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 03:07:00] 
[2026-01-27 03:07:00] 2026-01-27 02:06:30,100 | INFO     | **************************************
[2026-01-27 03:07:00] 2026-01-27 02:06:30,603 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | INFO     | sufficient remaining disk space (334629961728 B)
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | INFO     | update_server=False
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 03:07:00] 2026-01-27 02:06:30,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:07:00] 2026-01-27 02:06:30,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:07:00] 2026-01-27 02:06:30,956 | INFO     | aborting loop
[2026-01-27 03:07:00] 2026-01-27 02:06:31,506 | INFO     | all data control threads have been joined
[2026-01-27 03:07:00] 2026-01-27 02:06:31,627 | INFO     | [job] retrieve thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:31,627 | INFO     | [job] queue monitor thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:31,663 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:31,698 | INFO     | all payload control threads have been joined
[2026-01-27 03:07:00] 2026-01-27 02:06:31,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 03:07:00] 2026-01-27 02:06:31,962 | INFO     | [job] job monitor thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,105 | INFO     | all job control threads have been joined
[2026-01-27 03:07:00] 2026-01-27 02:06:32,152 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,427 | INFO     | [job] validate thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 03:07:00] 2026-01-27 02:06:32,511 | INFO     | [data] control thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,575 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,587 | INFO     | [payload] validate_post thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,704 | INFO     | [payload] control thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,734 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,802 | INFO     | [data] copytool_in thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:32,806 | INFO     | [payload] failed_post thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:33,111 | INFO     | [job] control thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:33,157 | INFO     | [monitor] cgroup control has ended
[2026-01-27 03:07:00] 2026-01-27 02:06:33,963 | INFO     | [data] copytool_out thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:36,492 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 03:07:00] 2026-01-27 02:06:37,941 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122585032512)>', '<ExcThread(monitor, started 140121781278464)>']
[2026-01-27 03:07:00] 2026-01-27 02:06:42,968 | INFO     | all workflow threads have been joined
[2026-01-27 03:07:00] 2026-01-27 02:06:42,969 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 03:07:00] 2026-01-27 02:06:42,969 | INFO     | traces error code: 0
[2026-01-27 03:07:00] 2026-01-27 02:06:42,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 03:07:00] 2026-01-27 02:07:00,420 | INFO     | PID=1657363 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 03:07:00] 2026-01-27 02:07:00,420 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 03:07:00] 2026-01-27 02:07:00,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 03:07:00] 2026-01-27 02:07:00,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 03:07:00] 2026-01-27 02:07:00,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 03:07:00] 2026-01-27 02:07:00,421 | INFO     | [monitor] control thread has ended
[2026-01-27 03:07:00] 2026-01-27 02:07:00,497 [wrapper] ==== pilot stdout END ====
[2026-01-27 03:07:00] 2026-01-27 02:07:00,502 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 03:07:00] 2026-01-27 02:07:00,506 [wrapper] pilotpid: 1657363
[2026-01-27 03:07:00] 2026-01-27 02:07:00,510 [wrapper] Pilot exit status: 0
[2026-01-27 03:07:00] 2026-01-27 02:07:00,522 [wrapper] pandaids: 6983458307
[2026-01-27 03:07:00] 2026-01-27 02:07:00,544 [wrapper] cleanup supervisor_pilot 1667740 1657364
[2026-01-27 03:07:00] 2026-01-27 02:07:00,548 [wrapper] Test setup, not cleaning
[2026-01-27 03:07:00] 2026-01-27 02:07:00,552 [wrapper] apfmon messages muted
[2026-01-27 03:07:00] 2026-01-27 02:07:00,556 [wrapper] ==== wrapper stdout END ====
[2026-01-27 03:07:00] 2026-01-27 02:07:00,560 [wrapper] ==== wrapper stderr END ====
[2026-01-27 03:07:00]  *** Error codes and diagnostics ***
[2026-01-27 03:07:00]     "exeErrorCode": 0,
[2026-01-27 03:07:00]     "exeErrorDiag": "",
[2026-01-27 03:07:00]     "pilotErrorCode": 0,
[2026-01-27 03:07:00]     "pilotErrorDiag": "",
[2026-01-27 03:07:00]  *** Listing of results directory ***
[2026-01-27 03:07:00] total 474832
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc    584422 Jan 25 21:48 pilot3.tar.gz
[2026-01-27 03:07:00] -rwx------ 1 boinc boinc     36322 Jan 25 21:52 runpilot2-wrapper.sh
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc      5111 Jan 25 21:54 queuedata.json
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc       100 Jan 27 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 03:07:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 00:27 run_atlas
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc       105 Jan 27 00:27 job.xml
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc 271202919 Jan 27 00:27 EVNT.48329799._000003.pool.root.1
[2026-01-27 03:07:00] drwxrwx--x 2 boinc boinc      4096 Jan 27 00:27 shared
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc    597789 Jan 27 00:27 input.tar.gz
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:27 start_atlas.sh
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:27 boinc_setup_complete
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc      6370 Jan 27 00:27 init_data.xml
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:27 boinc_lockfile
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc      2634 Jan 27 00:27 pandaJob.out
[2026-01-27 03:07:00] -rw------- 1 boinc boinc   1006441 Jan 27 00:27 agis_schedconf.cvmfs.json
[2026-01-27 03:07:00] -rw------- 1 boinc boinc   1516246 Jan 27 00:27 agis_ddmendpoints.agis.ALL.json
[2026-01-27 03:07:00] -rw------- 1 boinc boinc       422 Jan 27 00:27 workernode_map.json
[2026-01-27 03:07:00] drwx------ 5 boinc boinc      4096 Jan 27 00:27 pilot3
[2026-01-27 03:07:00] -rw------- 1 boinc boinc 207731819 Jan 27 03:06 HITS.48329801._000056.pool.root.1
[2026-01-27 03:07:00] -rw------- 1 boinc boinc        95 Jan 27 03:06 pilot_heartbeat.json
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc       529 Jan 27 03:06 boinc_task_state.xml
[2026-01-27 03:07:00] -rw------- 1 boinc boinc      1021 Jan 27 03:06 memory_monitor_summary.json
[2026-01-27 03:07:00] -rw------- 1 boinc boinc    328089 Jan 27 03:06 log.48329801._000056.job.log.tgz.1
[2026-01-27 03:07:00] -rw------- 1 boinc boinc      6300 Jan 27 03:06 heartbeat.json
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc        27 Jan 27 03:06 wrapper_checkpoint.txt
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc      8192 Jan 27 03:06 boinc_mmap_file
[2026-01-27 03:07:00] -rw------- 1 boinc boinc       747 Jan 27 03:07 pilotlog.txt
[2026-01-27 03:07:00] -rw------- 1 boinc boinc   1359296 Jan 27 03:07 log.48329801._000056.job.log.1
[2026-01-27 03:07:00] -rw------- 1 boinc boinc       357 Jan 27 03:07 output.list
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc       620 Jan 27 03:07 runtime_log
[2026-01-27 03:07:00] -rw------- 1 boinc boinc   1699840 Jan 27 03:07 result.tar.gz
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc      8901 Jan 27 03:07 runtime_log.err
[2026-01-27 03:07:00] -rw------- 1 boinc boinc       658 Jan 27 03:07 9IYMDmmGM48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmws1KDmX7ckin.diag
[2026-01-27 03:07:00] -rw-r--r-- 1 boinc boinc     11414 Jan 27 03:07 stderr.txt
[2026-01-27 03:07:00] HITS file was successfully produced:
[2026-01-27 03:07:00] -rw------- 1 boinc boinc 207731819 Jan 27 03:06 shared/HITS.pool.root.1
[2026-01-27 03:07:00]  *** Contents of shared directory: ***
[2026-01-27 03:07:00] total 469980
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc 271202919 Jan 27 00:27 ATLAS.root_0
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc    597789 Jan 27 00:27 input.tar.gz
[2026-01-27 03:07:00] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:27 start_atlas.sh
[2026-01-27 03:07:00] -rw------- 1 boinc boinc 207731819 Jan 27 03:06 HITS.pool.root.1
[2026-01-27 03:07:00] -rw------- 1 boinc boinc   1699840 Jan 27 03:07 result.tar.gz
03:07:02 (1653242): run_atlas exited; CPU time 37118.918103
03:07:02 (1653242): called boinc_finish(0)

</stderr_txt>
]]>

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