Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:38 (2289622): wrapper (7.7.26015): starting
21:50:38 (2289622): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 21:50:38] Arguments: --nthreads 2
[2026-01-26 21:50:38] Threads: 2
[2026-01-26 21:50:38] Checking for CVMFS
[2026-01-26 21:50:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 21:50:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 21:50:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 21:50:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 21:50:38] 2.9.2.0 1374182 8838 67528 155561 1 49 23685782 36864000 0 130560 0 2484582 99.979 284714 7289 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 21:50:38] CVMFS is ok
[2026-01-26 21:50:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 21:50:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 21:50:38] Further information can be found at the LHC@home message board.
[2026-01-26 21:50:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 21:50:38] Checking for apptainer binary...
[2026-01-26 21:50:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 21:50:38] Running /usr/bin/apptainer --version
[2026-01-26 21:50:38] apptainer version 1.4.1-1.1
[2026-01-26 21:50:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 21:50:38] thA310
[2026-01-26 21:50:38] apptainer works
[2026-01-26 21:50:38] Set ATHENA_PROC_NUMBER=2
[2026-01-26 21:50:38] Set ATHENA_CORE_NUMBER=2
[2026-01-26 21:50:39] Starting ATLAS job with PandaID=6983602770
[2026-01-26 21:50:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 01:17:24]  *** The last 200 lines of the pilot log: ***
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | job 6983602770 has completed (purged errors)
[2026-01-27 01:17:24] 2026-01-27 00:16:55,400 | INFO     | overall cleanup function is called
[2026-01-27 01:17:24] 2026-01-27 00:16:55,631 | WARNING  | process 2298060 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 01:17:24] 2026-01-27 00:16:55,659 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 01:17:24] 2026-01-27 00:16:55,694 | INFO     | number of running child processes to parent process 2298060: 1
[2026-01-27 01:17:24] 2026-01-27 00:16:55,694 | INFO     | maximum number of monitored processes: 6
[2026-01-27 01:17:24] 2026-01-27 00:16:55,694 | INFO     | aborting job monitoring since job object (job id=6983602770) has expired
[2026-01-27 01:17:24] 2026-01-27 00:16:56,406 | INFO     | --- collectZombieJob: --- 10, [2298060]
[2026-01-27 01:17:24] 2026-01-27 00:16:56,407 | INFO     | zombie collector waiting for pid 2298060
[2026-01-27 01:17:24] 2026-01-27 00:16:56,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 01:17:24] 2026-01-27 00:16:56,407 | INFO     | collected zombie processes
[2026-01-27 01:17:24] 2026-01-27 00:16:56,407 | INFO     | will attempt to kill all subprocesses of pid=2298060
[2026-01-27 01:17:24] 2026-01-27 00:16:56,488 | INFO     | process IDs to be killed: [2298060] (in reverse order)
[2026-01-27 01:17:24] 2026-01-27 00:16:56,512 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 01:17:24] 2026-01-27 00:16:56,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 01:17:24] 2026-01-27 00:16:56,513 | INFO     | did not find any defunct processes belonging to 2298060
[2026-01-27 01:17:24] 2026-01-27 00:16:56,514 | INFO     | did not find any defunct processes belonging to 2298060
[2026-01-27 01:17:24] 2026-01-27 00:16:56,514 | INFO     | ready for new job
[2026-01-27 01:17:24] 2026-01-27 00:16:56,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 01:17:24] 2026-01-27 00:16:56,515 | INFO     | **************************************
[2026-01-27 01:17:24] 2026-01-27 00:16:56,515 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 01:17:24] 2026-01-27 00:16:56,515 | INFO     | **************************************
[2026-01-27 01:17:24] 2026-01-27 00:16:56,515 | INFO     | 
[2026-01-27 01:17:24] 2026-01-27 00:16:56,515 | INFO     | architecture information:
[2026-01-27 01:17:24] 2026-01-27 00:16:56,516 | INFO     | executing command: cat /etc/os-release
[2026-01-27 01:17:24] 2026-01-27 00:16:56,524 | INFO     | cat /etc/os-release:
[2026-01-27 01:17:24] NAME="CentOS Linux"
[2026-01-27 01:17:24] VERSION="7 (Core)"
[2026-01-27 01:17:24] ID="centos"
[2026-01-27 01:17:24] ID_LIKE="rhel fedora"
[2026-01-27 01:17:24] VERSION_ID="7"
[2026-01-27 01:17:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 01:17:24] ANSI_COLOR="0;31"
[2026-01-27 01:17:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 01:17:24] HOME_URL="https://www.centos.org/"
[2026-01-27 01:17:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 01:17:24] 
[2026-01-27 01:17:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 01:17:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 01:17:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 01:17:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 01:17:24] 
[2026-01-27 01:17:24] 2026-01-27 00:16:56,524 | INFO     | **************************************
[2026-01-27 01:17:24] 2026-01-27 00:16:57,028 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | INFO     | sufficient remaining disk space (499162021888 B)
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | INFO     | update_server=False
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 01:17:24] 2026-01-27 00:16:57,040 | INFO     | aborting loop
[2026-01-27 01:17:24] 2026-01-27 00:16:57,041 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 01:17:24] 2026-01-27 00:16:57,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 01:17:24] 2026-01-27 00:16:57,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 01:17:24] 2026-01-27 00:16:57,335 | INFO     | all data control threads have been joined
[2026-01-27 01:17:24] 2026-01-27 00:16:57,641 | INFO     | all job control threads have been joined
[2026-01-27 01:17:24] 2026-01-27 00:16:57,837 | INFO     | all payload control threads have been joined
[2026-01-27 01:17:24] 2026-01-27 00:16:58,046 | INFO     | [job] retrieve thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,046 | INFO     | [job] job monitor thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,047 | INFO     | [job] queue monitor thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,133 | INFO     | [payload] failed_post thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,341 | INFO     | [data] control thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,464 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,570 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,647 | INFO     | [job] control thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,661 | INFO     | [job] validate thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,842 | INFO     | [payload] control thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,915 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:58,953 | INFO     | [data] copytool_in thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:59,047 | INFO     | [data] copytool_out thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:16:59,426 | INFO     | [payload] validate_post thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:17:00,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 01:17:24] 2026-01-27 00:17:04,478 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:17:08,061 | INFO     | job.realtimelogging is not enabled
[2026-01-27 01:17:24] 2026-01-27 00:17:09,067 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 01:17:24] 2026-01-27 00:17:18,376 | INFO     | [monitor] cgroup control has ended
[2026-01-27 01:17:24] 2026-01-27 00:17:19,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642496616256)>', '<ExcThread(monitor, started 140641782720256)>']
[2026-01-27 01:17:24] 2026-01-27 00:17:20,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 01:17:24] 2026-01-27 00:17:20,161 | INFO     | [monitor] control thread has ended
[2026-01-27 01:17:24] 2026-01-27 00:17:24,471 | INFO     | all workflow threads have been joined
[2026-01-27 01:17:24] 2026-01-27 00:17:24,472 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 01:17:24] 2026-01-27 00:17:24,472 | INFO     | traces error code: 0
[2026-01-27 01:17:24] 2026-01-27 00:17:24,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 01:17:24] 2026-01-27 00:17:24,517 [wrapper] ==== pilot stdout END ====
[2026-01-27 01:17:24] 2026-01-27 00:17:24,519 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 01:17:24] 2026-01-27 00:17:24,521 [wrapper] pilotpid: 2293652
[2026-01-27 01:17:24] 2026-01-27 00:17:24,523 [wrapper] Pilot exit status: 0
[2026-01-27 01:17:24] 2026-01-27 00:17:24,529 [wrapper] pandaids: 6983602770
[2026-01-27 01:17:24] 2026-01-27 00:17:24,541 [wrapper] cleanup supervisor_pilot 2308025 2293653
[2026-01-27 01:17:24] 2026-01-27 00:17:24,543 [wrapper] Test setup, not cleaning
[2026-01-27 01:17:24] 2026-01-27 00:17:24,545 [wrapper] apfmon messages muted
[2026-01-27 01:17:24] 2026-01-27 00:17:24,547 [wrapper] ==== wrapper stdout END ====
[2026-01-27 01:17:24] 2026-01-27 00:17:24,549 [wrapper] ==== wrapper stderr END ====
[2026-01-27 01:17:24]  *** Error codes and diagnostics ***
[2026-01-27 01:17:24]     "exeErrorCode": 0,
[2026-01-27 01:17:24]     "exeErrorDiag": "",
[2026-01-27 01:17:24]     "pilotErrorCode": 0,
[2026-01-27 01:17:24]     "pilotErrorDiag": "",
[2026-01-27 01:17:24]  *** Listing of results directory ***
[2026-01-27 01:17:24] total 470128
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 01:17:24] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:14 queuedata.json
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc       100 Jan 26 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 01:17:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 21:50 run_atlas
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc       105 Jan 26 21:50 job.xml
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc 275487865 Jan 26 21:50 EVNT.48329614._000005.pool.root.1
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc    597776 Jan 26 21:50 input.tar.gz
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:50 start_atlas.sh
[2026-01-27 01:17:24] drwxrwx--x 2 boinc boinc      4096 Jan 26 21:50 shared
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:50 boinc_setup_complete
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc      6206 Jan 26 21:50 init_data.xml
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:50 boinc_lockfile
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc      2608 Jan 26 21:50 pandaJob.out
[2026-01-27 01:17:24] -rw------- 1 boinc boinc   1006457 Jan 26 21:50 agis_schedconf.cvmfs.json
[2026-01-27 01:17:24] -rw------- 1 boinc boinc       419 Jan 26 21:51 workernode_map.json
[2026-01-27 01:17:24] drwx------ 5 boinc boinc      4096 Jan 26 21:51 pilot3
[2026-01-27 01:17:24] -rw------- 1 boinc boinc        95 Jan 27 01:16 pilot_heartbeat.json
[2026-01-27 01:17:24] -rw------- 1 boinc boinc 197848845 Jan 27 01:16 HITS.48329616._000106.pool.root.1
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc       530 Jan 27 01:16 boinc_task_state.xml
[2026-01-27 01:17:24] -rw------- 1 boinc boinc      1022 Jan 27 01:16 memory_monitor_summary.json
[2026-01-27 01:17:24] -rw------- 1 boinc boinc   1516246 Jan 27 01:16 agis_ddmendpoints.agis.ALL.json
[2026-01-27 01:17:24] -rw------- 1 boinc boinc    331726 Jan 27 01:16 log.48329616._000106.job.log.tgz.1
[2026-01-27 01:17:24] -rw------- 1 boinc boinc      6294 Jan 27 01:16 heartbeat.json
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc      8192 Jan 27 01:17 boinc_mmap_file
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc        28 Jan 27 01:17 wrapper_checkpoint.txt
[2026-01-27 01:17:24] -rw------- 1 boinc boinc      4624 Jan 27 01:17 pilotlog.txt
[2026-01-27 01:17:24] -rw------- 1 boinc boinc   1743285 Jan 27 01:17 log.48329616._000106.job.log.1
[2026-01-27 01:17:24] -rw------- 1 boinc boinc       357 Jan 27 01:17 output.list
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc       620 Jan 27 01:17 runtime_log
[2026-01-27 01:17:24] -rw------- 1 boinc boinc   2088960 Jan 27 01:17 result.tar.gz
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc      8897 Jan 27 01:17 runtime_log.err
[2026-01-27 01:17:24] -rw------- 1 boinc boinc       661 Jan 27 01:17 gDIKDmrKQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5k8KDmJ78k6m.diag
[2026-01-27 01:17:24] -rw-r--r-- 1 boinc boinc     12578 Jan 27 01:17 stderr.txt
[2026-01-27 01:17:24] HITS file was successfully produced:
[2026-01-27 01:17:24] -rw------- 1 boinc boinc 197848845 Jan 27 01:16 shared/HITS.pool.root.1
[2026-01-27 01:17:24]  *** Contents of shared directory: ***
[2026-01-27 01:17:24] total 464892
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc 275487865 Jan 26 21:50 ATLAS.root_0
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc    597776 Jan 26 21:50 input.tar.gz
[2026-01-27 01:17:24] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:50 start_atlas.sh
[2026-01-27 01:17:24] -rw------- 1 boinc boinc 197848845 Jan 27 01:16 HITS.pool.root.1
[2026-01-27 01:17:24] -rw------- 1 boinc boinc   2088960 Jan 27 01:17 result.tar.gz
01:17:26 (2289622): run_atlas exited; CPU time 24209.417947
01:17:26 (2289622): called boinc_finish(0)

</stderr_txt>
]]>

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