Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:09 (29138): wrapper (7.7.26015): starting
12:34:09 (29138): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 12:34:09] Arguments: --nthreads 8
[2026-01-27 12:34:09] Threads: 8
[2026-01-27 12:34:09] Checking for CVMFS
[2026-01-27 12:34:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:34:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:34:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:34:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:34:10] 2.11.2.0 10131 61282 133128 155583 1 119 15284248 25165825 750 130560 0 20943985 99.798 15617219 3688 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 12:34:10] CVMFS is ok
[2026-01-27 12:34:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:34:10] Checking for apptainer binary...
[2026-01-27 12:34:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:34:10] Running /usr/bin/apptainer --version
[2026-01-27 12:34:10] apptainer version 1.3.2-1.el7
[2026-01-27 12:34:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:34:11] cg-vwn460.simple-grid.lan
[2026-01-27 12:34:11] apptainer works
[2026-01-27 12:34:11] Set ATHENA_PROC_NUMBER=8
[2026-01-27 12:34:11] Set ATHENA_CORE_NUMBER=8
[2026-01-27 12:34:11] Starting ATLAS job with PandaID=6984062903
[2026-01-27 12:34:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 16:27:10]  *** The last 200 lines of the pilot log: ***
[2026-01-27 16:27:11] 2026-01-27 15:26:17,798 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6984062903/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,799 | INFO     | extracted standard info from prmon json
[2026-01-27 16:27:11] 2026-01-27 15:26:17,799 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 16:27:11] 2026-01-27 15:26:17,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 16:27:11] 2026-01-27 15:26:17,800 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 16:27:11] 2026-01-27 15:26:17,800 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 16:27:11] 2026-01-27 15:26:17,804 | INFO     | fitting pss+swap vs Time
[2026-01-27 16:27:11] 2026-01-27 15:26:17,805 | INFO     | sum of square deviations: 3675146117.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,807 | INFO     | sum of deviations: -54935150060.49995
[2026-01-27 16:27:11] 2026-01-27 15:26:17,807 | INFO     | mean x: 1769520630.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,807 | INFO     | mean y: 2547932.995614035
[2026-01-27 16:27:11] 2026-01-27 15:26:17,807 | INFO     | intersect: 26452892566.100708
[2026-01-27 16:27:11] 2026-01-27 15:26:17,808 | INFO     | chi2: 2.5246767527011036
[2026-01-27 16:27:11] 2026-01-27 15:26:17,808 | INFO     | sum of square deviations: 3438620752.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,810 | INFO     | sum of deviations: -38278943565.00001
[2026-01-27 16:27:11] 2026-01-27 15:26:17,810 | INFO     | mean x: 1769520478.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,810 | INFO     | mean y: 2558499.8340807175
[2026-01-27 16:27:11] 2026-01-27 15:26:17,810 | INFO     | intersect: 19700972311.556995
[2026-01-27 16:27:11] 2026-01-27 15:26:17,811 | INFO     | chi2: 1.757220455050801
[2026-01-27 16:27:11] 2026-01-27 15:26:17,811 | INFO     | current chi2=1.757220455050801 (change=30.39820035690572 %)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,811 | INFO     | sum of square deviations: 3212467674.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,813 | INFO     | sum of deviations: -36734120547.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,813 | INFO     | mean x: 1769520325.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,813 | INFO     | mean y: 2559542.7660550456
[2026-01-27 16:27:11] 2026-01-27 15:26:17,813 | INFO     | intersect: 20236778073.318443
[2026-01-27 16:27:11] 2026-01-27 15:26:17,814 | INFO     | chi2: 1.7548766565711902
[2026-01-27 16:27:11] 2026-01-27 15:26:17,814 | INFO     | current chi2=1.7548766565711902 (change=0.13338101504987887 %)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,814 | INFO     | right removable region: 217
[2026-01-27 16:27:11] 2026-01-27 15:26:17,818 | INFO     | sum of square deviations: 3438620752.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,819 | INFO     | sum of deviations: -90531995269.99998
[2026-01-27 16:27:11] 2026-01-27 15:26:17,820 | INFO     | mean x: 1769520783.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,820 | INFO     | mean y: 2570655.452914798
[2026-01-27 16:27:11] 2026-01-27 15:26:17,820 | INFO     | intersect: 46590507712.351906
[2026-01-27 16:27:11] 2026-01-27 15:26:17,820 | INFO     | chi2: 1.0228766878902789
[2026-01-27 16:27:11] 2026-01-27 15:26:17,820 | INFO     | current chi2=1.0228766878902789 (change=59.48484546404118 %)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,821 | INFO     | sum of square deviations: 3212467674.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,823 | INFO     | sum of deviations: -87259940996.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,823 | INFO     | mean x: 1769520935.5
[2026-01-27 16:27:11] 2026-01-27 15:26:17,823 | INFO     | mean y: 2568419.9633027525
[2026-01-27 16:27:11] 2026-01-27 15:26:17,823 | INFO     | intersect: 48067890181.3564
[2026-01-27 16:27:11] 2026-01-27 15:26:17,823 | INFO     | chi2: 1.0101238777774508
[2026-01-27 16:27:11] 2026-01-27 15:26:17,824 | INFO     | current chi2=1.0101238777774508 (change=1.2467592881729637 %)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,824 | INFO     | left removable region: 20
[2026-01-27 16:27:11] 2026-01-27 15:26:17,824 | INFO     | sum of square deviations: 2370641658.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,825 | INFO     | sum of deviations: -55773735696.00001
[2026-01-27 16:27:11] 2026-01-27 15:26:17,826 | INFO     | mean x: 1769520905.0
[2026-01-27 16:27:11] 2026-01-27 15:26:17,826 | INFO     | mean y: 2571998.5583756347
[2026-01-27 16:27:11] 2026-01-27 15:26:17,826 | INFO     | intersect: 41633828637.859665
[2026-01-27 16:27:11] 2026-01-27 15:26:17,826 | INFO     | chi2: 0.2066180461059819
[2026-01-27 16:27:11] 2026-01-27 15:26:17,826 | INFO     | current memory leak: -23.53 B/s (using 197 data points, chi2=0.21)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,827 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-01-27 16:27:11] 2026-01-27 15:26:17,827 | INFO     | ..............................
[2026-01-27 16:27:11] 2026-01-27 15:26:17,827 | INFO     | . Timing measurements:
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . get job = 0 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . initial setup = 9 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . payload setup = 9 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . stage-in = 0 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . payload execution = 13869 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . stage-out = 4 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | . log creation = 1 s
[2026-01-27 16:27:11] 2026-01-27 15:26:17,828 | INFO     | ..............................
[2026-01-27 16:27:11] 2026-01-27 15:26:17,888 | INFO     | time since job start (13899s) is within the limit (349056.0s)
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | 
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | job summary report
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | --------------------------------------------------
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | PanDA job id: 6984062903
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | task id: 48317872
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | errors: (none)
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 16:27:11] 2026-01-27 15:26:18,103 | INFO     | pilot state: finished 
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | transexitcode: 0
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | exeerrorcode: 0
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | exeerrordiag: 
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | exitcode: 0
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | exitmsg: OK
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | cpuconsumptiontime: 55362 s
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | nevents: 400
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | neventsw: 0
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | pid: 5065
[2026-01-27 16:27:11] 2026-01-27 15:26:18,104 | INFO     | pgrp: 5065
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | corecount: 8
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | event service: False
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | sizes: {0: 2283144, 1: 2284202, 2: 2284262, 12: 2284290, 13883: 2314610, 13887: 2323792, 13888: 2323930}
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | --------------------------------------------------
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | 
[2026-01-27 16:27:11] 2026-01-27 15:26:18,105 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-27 16:27:11] 2026-01-27 15:26:18,366 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,369 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 16:27:11] 2026-01-27 15:26:18,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 16:27:11] 2026-01-27 15:26:18,369 | INFO     | job 6984062903 has completed (purged errors)
[2026-01-27 16:27:11] 2026-01-27 15:26:18,369 | INFO     | overall cleanup function is called
[2026-01-27 16:27:11] 2026-01-27 15:26:19,378 | INFO     | --- collectZombieJob: --- 10, [5065]
[2026-01-27 16:27:11] 2026-01-27 15:26:19,378 | INFO     | zombie collector waiting for pid 5065
[2026-01-27 16:27:11] 2026-01-27 15:26:19,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 16:27:11] 2026-01-27 15:26:19,378 | INFO     | collected zombie processes
[2026-01-27 16:27:11] 2026-01-27 15:26:19,378 | INFO     | will attempt to kill all subprocesses of pid=5065
[2026-01-27 16:27:11] 2026-01-27 15:26:19,457 | INFO     | process IDs to be killed: [5065] (in reverse order)
[2026-01-27 16:27:11] 2026-01-27 15:26:20,456 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 16:27:11] 2026-01-27 15:26:20,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 16:27:11] 2026-01-27 15:26:20,458 | INFO     | did not find any defunct processes belonging to 5065
[2026-01-27 16:27:11] 2026-01-27 15:26:20,460 | INFO     | did not find any defunct processes belonging to 5065
[2026-01-27 16:27:11] 2026-01-27 15:26:20,460 | INFO     | ready for new job
[2026-01-27 16:27:11] 2026-01-27 15:26:20,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 16:27:11] 2026-01-27 15:26:20,462 | INFO     | **************************************
[2026-01-27 16:27:11] 2026-01-27 15:26:20,463 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 16:27:11] 2026-01-27 15:26:20,463 | INFO     | **************************************
[2026-01-27 16:27:11] 2026-01-27 15:26:20,463 | INFO     | 
[2026-01-27 16:27:11] 2026-01-27 15:26:20,463 | INFO     | pilot is running in a VM
[2026-01-27 16:27:11] 2026-01-27 15:26:20,463 | INFO     | architecture information:
[2026-01-27 16:27:11] 2026-01-27 15:26:20,473 | INFO     | executing command: cat /etc/os-release
[2026-01-27 16:27:11] 2026-01-27 15:26:20,636 | INFO     | cat /etc/os-release:
[2026-01-27 16:27:11] NAME="CentOS Linux"
[2026-01-27 16:27:11] VERSION="7 (Core)"
[2026-01-27 16:27:11] ID="centos"
[2026-01-27 16:27:11] ID_LIKE="rhel fedora"
[2026-01-27 16:27:11] VERSION_ID="7"
[2026-01-27 16:27:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 16:27:11] ANSI_COLOR="0;31"
[2026-01-27 16:27:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 16:27:11] HOME_URL="https://www.centos.org/"
[2026-01-27 16:27:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 16:27:11] 
[2026-01-27 16:27:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 16:27:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 16:27:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 16:27:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 16:27:11] 
[2026-01-27 16:27:11] 2026-01-27 15:26:20,636 | INFO     | **************************************
[2026-01-27 16:27:11] 2026-01-27 15:26:21,140 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-27 16:27:11] 2026-01-27 15:26:21,313 | INFO     | sufficient remaining disk space (497461231616 B)
[2026-01-27 16:27:11] 2026-01-27 15:26:21,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 16:27:11] 2026-01-27 15:26:21,314 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 16:27:11] 2026-01-27 15:26:21,314 | INFO     | update_server=False
[2026-01-27 16:27:11] 2026-01-27 15:26:21,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 16:27:11] 2026-01-27 15:26:21,506 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 16:27:11] 2026-01-27 15:26:21,506 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 16:27:11] 2026-01-27 15:26:21,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 16:27:11] 2026-01-27 15:26:21,506 | INFO     | will abort loop
[2026-01-27 16:27:11] 2026-01-27 15:26:21,633 | INFO     | all data control threads have been joined
[2026-01-27 16:27:11] 2026-01-27 15:26:22,320 | INFO     | [job] retrieve thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:22,350 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:22,436 | INFO     | all payload control threads have been joined
[2026-01-27 16:27:11] 2026-01-27 15:26:22,512 | INFO     | [job] job monitor thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:22,550 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:22,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 16:27:11] 2026-01-27 15:26:22,639 | INFO     | [data] control thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:22,745 | INFO     | all job control threads have been joined
[2026-01-27 16:27:11] 2026-01-27 15:26:23,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 16:27:11] 2026-01-27 15:26:23,081 | INFO     | [data] copytool_in thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,113 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 16:27:11] 2026-01-27 15:26:23,443 | INFO     | [payload] control thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,502 | INFO     | [payload] validate_post thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,710 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,748 | INFO     | [job] validate thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,751 | INFO     | [job] control thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:23,884 | INFO     | [payload] failed_post thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:24,008 | INFO     | [job] queue monitor thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:24,579 | INFO     | [data] copytool_out thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:27,182 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 16:27:11] 2026-01-27 15:26:51,085 | INFO     | PID=564 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-27 16:27:11] 2026-01-27 15:26:51,086 | INFO     | .. there are 2 such processes running
[2026-01-27 16:27:11] 2026-01-27 15:26:51,086 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 16:27:11] 2026-01-27 15:26:51,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 16:27:11] 2026-01-27 15:26:51,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 16:27:11] 2026-01-27 15:27:01,528 | INFO     | [monitor] cgroup control has ended
[2026-01-27 16:27:11] 2026-01-27 15:27:01,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139648141502272)>', '<ExcThread(monitor, started 139647531329280)>']
[2026-01-27 16:27:11] 2026-01-27 15:27:02,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 16:27:11] 2026-01-27 15:27:02,151 | INFO     | [monitor] control thread has ended
[2026-01-27 16:27:11] 2026-01-27 15:27:06,696 | INFO     | all workflow threads have been joined
[2026-01-27 16:27:11] 2026-01-27 15:27:06,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 16:27:11] 2026-01-27 15:27:06,696 | INFO     | traces error code: 0
[2026-01-27 16:27:11] 2026-01-27 15:27:06,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 16:27:11] 2026-01-27 15:27:07,178 [wrapper] ==== pilot stdout END ====
[2026-01-27 16:27:11] 2026-01-27 15:27:07,303 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 16:27:11] 2026-01-27 15:27:07,411 [wrapper] pilotpid: 564
[2026-01-27 16:27:11] 2026-01-27 15:27:07,508 [wrapper] Pilot exit status: 0
[2026-01-27 16:27:11] 2026-01-27 15:27:08,016 [wrapper] pandaids: 6984062903
[2026-01-27 16:27:11] 2026-01-27 15:27:08,910 [wrapper] cleanup supervisor_pilot 18679 565
[2026-01-27 16:27:11] 2026-01-27 15:27:09,002 [wrapper] Test setup, not cleaning
[2026-01-27 16:27:11] 2026-01-27 15:27:09,113 [wrapper] apfmon messages muted
[2026-01-27 16:27:11] 2026-01-27 15:27:09,191 [wrapper] ==== wrapper stdout END ====
[2026-01-27 16:27:11] 2026-01-27 15:27:09,296 [wrapper] ==== wrapper stderr END ====
[2026-01-27 16:27:11]  *** Error codes and diagnostics ***
[2026-01-27 16:27:11]     "exeErrorCode": 0,
[2026-01-27 16:27:11]     "exeErrorDiag": "",
[2026-01-27 16:27:11]     "pilotErrorCode": 0,
[2026-01-27 16:27:11]     "pilotErrorDiag": "",
[2026-01-27 16:27:11]  *** Listing of results directory ***
[2026-01-27 16:27:11] total 681592
[2026-01-27 16:27:11] -rwx------. 1 boinc boinc     36322 Jan 26 08:41 runpilot2-wrapper.sh
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc    584422 Jan 26 08:45 pilot3.tar.gz
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc      5111 Jan 26 08:45 queuedata.json
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc       100 Jan 27 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 16:27:11] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 12:34 run_atlas
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc       105 Jan 27 12:34 job.xml
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc 498658951 Jan 27 12:34 EVNT.48317869._000064.pool.root.1
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc      6391 Jan 27 12:34 init_data.xml
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc     15845 Jan 27 12:34 start_atlas.sh
[2026-01-27 16:27:11] drwxrwx--x. 2 boinc boinc        68 Jan 27 12:34 shared
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc    597751 Jan 27 12:34 input.tar.gz
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc         0 Jan 27 12:34 boinc_lockfile
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc      2515 Jan 27 12:34 pandaJob.out
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc   1002853 Jan 27 12:34 agis_schedconf.cvmfs.json
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc       413 Jan 27 12:34 workernode_map.json
[2026-01-27 16:27:11] drwx------. 5 boinc boinc      4096 Jan 27 12:34 pilot3
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc 190494051 Jan 27 16:24 HITS.48317872._003206.pool.root.1
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc       532 Jan 27 16:24 boinc_task_state.xml
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc      1014 Jan 27 16:26 memory_monitor_summary.json
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc        95 Jan 27 16:26 pilot_heartbeat.json
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc   1516246 Jan 27 16:26 agis_ddmendpoints.agis.ALL.json
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc    489801 Jan 27 16:26 log.48317872._003206.job.log.tgz.1
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc      6316 Jan 27 16:26 heartbeat.json
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc      8192 Jan 27 16:26 boinc_mmap_file
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc        28 Jan 27 16:26 wrapper_checkpoint.txt
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc      5064 Jan 27 16:27 pilotlog.txt
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc   1947549 Jan 27 16:27 log.48317872._003206.job.log.1
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc       357 Jan 27 16:27 output.list
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc       620 Jan 27 16:27 runtime_log
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc   2457600 Jan 27 16:27 result.tar.gz
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc       655 Jan 27 16:27 YJyMDmSPW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeV9KDmRtOo0m.diag
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc      8816 Jan 27 16:27 runtime_log.err
[2026-01-27 16:27:11] -rw-r--r--. 1 boinc boinc     20713 Jan 27 16:27 stderr.txt
[2026-01-27 16:27:11] HITS file was successfully produced:
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc 190494051 Jan 27 16:24 shared/HITS.pool.root.1
[2026-01-27 16:27:11]  *** Contents of shared directory: ***
[2026-01-27 16:27:11] total 676004
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc 498658951 Jan 27 12:34 ATLAS.root_0
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc     15845 Jan 27 12:34 start_atlas.sh
[2026-01-27 16:27:11] -rw-r--r--. 2 boinc boinc    597751 Jan 27 12:34 input.tar.gz
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc 190494051 Jan 27 16:24 HITS.pool.root.1
[2026-01-27 16:27:11] -rw-------. 1 boinc boinc   2457600 Jan 27 16:27 result.tar.gz
16:27:13 (29138): run_atlas exited; CPU time 55482.774034
16:27:13 (29138): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN