Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:43:27 (2427508): wrapper (7.7.26015): starting
19:43:27 (2427508): wrapper: running run_atlas (--nthreads 9)
[2026-01-26 19:43:27] Arguments: --nthreads 9
[2026-01-26 19:43:27] Threads: 9
[2026-01-26 19:43:27] Checking for CVMFS
[2026-01-26 19:43:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:43:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:43:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:43:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:43:28] 2.13.3.0 7100 118562 305944 155567 0 1055 35014948 40960001 49115 16776704 0 1345675322 99.715 971004941 49149 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 19:43:28] CVMFS is ok
[2026-01-26 19:43:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:43:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:43:28] Further information can be found at the LHC@home message board.
[2026-01-26 19:43:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:43:28] Checking for apptainer binary...
[2026-01-26 19:43:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:43:28] Running /usr/bin/apptainer --version
[2026-01-26 19:43:29] apptainer version 1.4.5-2.el9
[2026-01-26 19:43:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:43:30] c8-6-10.aglt2.org
[2026-01-26 19:43:30] apptainer works
[2026-01-26 19:43:30] Set ATHENA_PROC_NUMBER=9
[2026-01-26 19:43:30] Set ATHENA_CORE_NUMBER=9
[2026-01-26 19:43:30] Starting ATLAS job with PandaID=6984062956
[2026-01-26 19:43:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 21:00:33]  *** The last 200 lines of the pilot log: ***
[2026-01-26 21:00:33]  lfn=log.48317872._003259.job.log.tgz.1
[2026-01-26 21:00:33]  mtime=0
[2026-01-26 21:00:33]  protocol_id=None
[2026-01-26 21:00:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 21:00:33]  replicas=None
[2026-01-26 21:00:33]  scope=mc23_13p6TeV
[2026-01-26 21:00:33]  status=None
[2026-01-26 21:00:33]  status_code=0
[2026-01-26 21:00:33]  storage_token=
[2026-01-26 21:00:33]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6984062956/log.48317872._003259.job.log.tgz.1
[2026-01-26 21:00:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/ad/log.48317872._003259.job.log.tgz.1
[2026-01-26 21:00:33]  workdir=None
[2026-01-26 21:00:33] ]
[2026-01-26 21:00:33] 2026-01-27 01:59:40,572 | INFO     | transferring file log.48317872._003259.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6984062956/log.48317872._003259.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 21:00:33] 2026-01-27 01:59:40,572 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6984062956/log.48317872._003259.job.log.tgz.1 /tmp/boinchome/slots/6/log.48317872._003259.job
[2026-01-26 21:00:33] 2026-01-27 01:59:40,715 | INFO     | adding to output.list: log.48317872._003259.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/ad/log.48317872._003259.job.log.tg
[2026-01-26 21:00:33] 2026-01-27 01:59:40,716 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 21:00:33] 2026-01-27 01:59:40,716 | INFO     | summary of transferred files:
[2026-01-26 21:00:33] 2026-01-27 01:59:40,716 | INFO     |  -- lfn=log.48317872._003259.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 21:00:33] 2026-01-27 01:59:40,716 | INFO     | stage-out finished correctly
[2026-01-26 21:00:33] 2026-01-27 01:59:42,272 | WARNING  | process 2466331 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 21:00:33] 2026-01-27 01:59:42,278 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6984062956/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 21:00:33] 2026-01-27 01:59:43,076 | INFO     | PID=2440430 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-26 21:00:33] 2026-01-27 01:59:43,076 | INFO     | .. there are 58 such processes running
[2026-01-26 21:00:33] 2026-01-27 01:59:43,533 | INFO     | number of running child processes to parent process 2466331: 1
[2026-01-26 21:00:33] 2026-01-27 01:59:43,533 | INFO     | maximum number of monitored processes: 6
[2026-01-26 21:00:33] 2026-01-27 01:59:43,971 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 21:00:33] 2026-01-27 01:59:44,090 | INFO     | time since job start (4467s) is within the limit (349056.0s)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,038 | INFO     | monitor loop #274: job 0:6984062956 is in state 'finished'
[2026-01-26 21:00:33] 2026-01-27 01:59:46,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,097 | INFO     | time since job start (4469s) is within the limit (349056.0s)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,457 | INFO     | job 6984062956 has state=finished
[2026-01-26 21:00:33] 2026-01-27 01:59:46,457 | INFO     | preparing for final server update for job 6984062956 in state='finished'
[2026-01-26 21:00:33] 2026-01-27 01:59:46,457 | INFO     | reading metadata from: /tmp/boinchome/slots/6/PanDA_Pilot-6984062956/jobReport.json
[2026-01-26 21:00:33] 2026-01-27 01:59:46,460 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/6/workernode_map.json
[2026-01-26 21:00:33] 2026-01-27 01:59:46,460 | INFO     | this job has now completed (state=finished)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,460 | INFO     | log transfer has been attempted: DONE
[2026-01-26 21:00:33] 2026-01-27 01:59:46,460 | INFO     | job 6984062956 has finished - writing final server update
[2026-01-26 21:00:33] 2026-01-27 01:59:46,461 | INFO     | total number of processed events: 400 (read)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,513 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6984062956/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,513 | INFO     | extracted standard info from prmon json
[2026-01-26 21:00:33] 2026-01-27 01:59:46,513 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 21:00:33] 2026-01-27 01:59:46,513 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 21:00:33] 2026-01-27 01:59:46,514 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 21:00:33] 2026-01-27 01:59:46,514 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | fitting pss+swap vs Time
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | sum of square deviations: 89119264.36363639
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | sum of deviations: 1892846542.0909092
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | mean x: 1769477063.5454545
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | mean y: 2552782.4696969697
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | intersect: -37580214141.80302
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | chi2: 0.14118229000126953
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | current memory leak: 21.24 B/s (using 66 data points, chi2=0.14)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,529 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | ..............................
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . Timing measurements:
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . get job = 0 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . initial setup = 39 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . payload setup = 33 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . stage-in = 0 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . payload execution = 4421 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . stage-out = 2 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | . log creation = 0 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,530 | INFO     | ..............................
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | 
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | job summary report
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | --------------------------------------------------
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | PanDA job id: 6984062956
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | task id: 48317872
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | errors: (none)
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | pilot state: finished 
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | transexitcode: 0
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | exeerrorcode: 0
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | exeerrordiag: 
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | exitcode: 0
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | exitmsg: OK
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | cpuconsumptiontime: 21993 s
[2026-01-26 21:00:33] 2026-01-27 01:59:46,972 | INFO     | nevents: 400
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | neventsw: 0
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | pid: 2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | pgrp: 2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | corecount: 9
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | event service: False
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | sizes: {0: 2283801, 1: 2284262, 4458: 2310361, 4462: 2319359, 4465: 2319415, 4468: 2319609}
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | --------------------------------------------------
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | 
[2026-01-26 21:00:33] 2026-01-27 01:59:46,973 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,080 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 21:00:33] 2026-01-27 01:59:47,081 | INFO     | job 6984062956 has completed (purged errors)
[2026-01-26 21:00:33] 2026-01-27 01:59:47,081 | INFO     | overall cleanup function is called
[2026-01-26 21:00:33] 2026-01-27 01:59:48,095 | INFO     | --- collectZombieJob: --- 10, [2466331]
[2026-01-26 21:00:33] 2026-01-27 01:59:48,095 | INFO     | zombie collector waiting for pid 2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:48,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 21:00:33] 2026-01-27 01:59:48,095 | INFO     | collected zombie processes
[2026-01-26 21:00:33] 2026-01-27 01:59:48,095 | INFO     | will attempt to kill all subprocesses of pid=2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:49,098 | INFO     | process IDs to be killed: [2466331] (in reverse order)
[2026-01-26 21:00:33] 2026-01-27 01:59:49,356 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 21:00:33] 2026-01-27 01:59:49,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 21:00:33] 2026-01-27 01:59:49,399 | INFO     | did not find any defunct processes belonging to 2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:49,485 | INFO     | did not find any defunct processes belonging to 2466331
[2026-01-26 21:00:33] 2026-01-27 01:59:49,491 | INFO     | ready for new job
[2026-01-26 21:00:33] 2026-01-27 01:59:49,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 21:00:33] 2026-01-27 01:59:49,493 | INFO     | **************************************
[2026-01-26 21:00:33] 2026-01-27 01:59:49,493 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 21:00:33] 2026-01-27 01:59:49,493 | INFO     | **************************************
[2026-01-26 21:00:33] 2026-01-27 01:59:49,493 | INFO     | 
[2026-01-26 21:00:33] 2026-01-27 01:59:49,526 | INFO     | architecture information:
[2026-01-26 21:00:33] 2026-01-27 01:59:49,527 | INFO     | executing command: cat /etc/os-release
[2026-01-26 21:00:33] 2026-01-27 01:59:49,587 | INFO     | cat /etc/os-release:
[2026-01-26 21:00:33] NAME="CentOS Linux"
[2026-01-26 21:00:33] VERSION="7 (Core)"
[2026-01-26 21:00:33] ID="centos"
[2026-01-26 21:00:33] ID_LIKE="rhel fedora"
[2026-01-26 21:00:33] VERSION_ID="7"
[2026-01-26 21:00:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 21:00:33] ANSI_COLOR="0;31"
[2026-01-26 21:00:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 21:00:33] HOME_URL="https://www.centos.org/"
[2026-01-26 21:00:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 21:00:33] 
[2026-01-26 21:00:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 21:00:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 21:00:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 21:00:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 21:00:33] 
[2026-01-26 21:00:33] 2026-01-27 01:59:49,587 | INFO     | **************************************
[2026-01-26 21:00:33] 2026-01-27 01:59:50,091 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-01-26 21:00:33] 2026-01-27 01:59:50,145 | INFO     | sufficient remaining disk space (166976290816 B)
[2026-01-26 21:00:33] 2026-01-27 01:59:50,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 21:00:33] 2026-01-27 01:59:50,146 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 21:00:33] 2026-01-27 01:59:50,146 | INFO     | update_server=False
[2026-01-26 21:00:33] 2026-01-27 01:59:50,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 21:00:33] 2026-01-27 01:59:50,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:00:33] 2026-01-27 01:59:50,147 | INFO     | aborting loop
[2026-01-26 21:00:33] 2026-01-27 01:59:50,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 21:00:33] 2026-01-27 01:59:50,549 | INFO     | all payload control threads have been joined
[2026-01-26 21:00:33] 2026-01-27 01:59:50,661 | INFO     | all data control threads have been joined
[2026-01-26 21:00:33] 2026-01-27 01:59:51,157 | INFO     | [job] retrieve thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,157 | INFO     | [job] job monitor thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,286 | INFO     | [payload] validate_post thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 21:00:33] 2026-01-27 01:59:51,471 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,555 | INFO     | [payload] control thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:00:33] 2026-01-27 01:59:51,667 | INFO     | [data] control thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:51,851 | INFO     | all job control threads have been joined
[2026-01-26 21:00:33] 2026-01-27 01:59:51,989 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,075 | INFO     | [job] validate thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,083 | INFO     | [data] copytool_in thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,089 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,621 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,672 | INFO     | [job] queue monitor thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,700 | INFO     | [payload] failed_post thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:52,857 | INFO     | [job] control thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:53,434 | INFO     | [data] copytool_out thread has finished
[2026-01-26 21:00:33] 2026-01-27 01:59:54,166 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 21:00:33] 2026-01-27 02:00:20,654 | INFO     | PID=2440430 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 21:00:33] 2026-01-27 02:00:20,654 | INFO     | .. there are 59 such processes running
[2026-01-26 21:00:33] 2026-01-27 02:00:20,655 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 21:00:33] 2026-01-27 02:00:20,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 21:00:33] 2026-01-27 02:00:20,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 21:00:33] 2026-01-27 02:00:25,997 | INFO     | [monitor] cgroup control has ended
[2026-01-26 21:00:33] 2026-01-27 02:00:27,420 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666837911360)>', '<ExcThread(monitor, started 139665826903808)>']
[2026-01-26 21:00:33] 2026-01-27 02:00:27,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 21:00:33] 2026-01-27 02:00:27,697 | INFO     | [monitor] control thread has ended
[2026-01-26 21:00:33] 2026-01-27 02:00:32,446 | INFO     | all workflow threads have been joined
[2026-01-26 21:00:33] 2026-01-27 02:00:32,446 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 21:00:33] 2026-01-27 02:00:32,446 | INFO     | traces error code: 0
[2026-01-26 21:00:33] 2026-01-27 02:00:32,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 21:00:33] 2026-01-27 02:00:32,827 [wrapper] ==== pilot stdout END ====
[2026-01-26 21:00:33] 2026-01-27 02:00:32,850 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 21:00:33] 2026-01-27 02:00:32,871 [wrapper] pilotpid: 2440430
[2026-01-26 21:00:33] 2026-01-27 02:00:32,890 [wrapper] Pilot exit status: 0
[2026-01-26 21:00:33] 2026-01-27 02:00:33,102 [wrapper] pandaids: 6984062956
[2026-01-26 21:00:33] 2026-01-27 02:00:33,333 [wrapper] cleanup supervisor_pilot 3024350 2440431
[2026-01-26 21:00:33] 2026-01-27 02:00:33,349 [wrapper] Test setup, not cleaning
[2026-01-26 21:00:33] 2026-01-27 02:00:33,365 [wrapper] apfmon messages muted
[2026-01-26 21:00:33] 2026-01-27 02:00:33,380 [wrapper] ==== wrapper stdout END ====
[2026-01-26 21:00:33] 2026-01-27 02:00:33,388 [wrapper] ==== wrapper stderr END ====
[2026-01-26 21:00:33]  *** Error codes and diagnostics ***
[2026-01-26 21:00:33]     "exeErrorCode": 0,
[2026-01-26 21:00:33]     "exeErrorDiag": "",
[2026-01-26 21:00:33]     "pilotErrorCode": 0,
[2026-01-26 21:00:33]     "pilotErrorDiag": "",
[2026-01-26 21:00:33]  *** Listing of results directory ***
[2026-01-26 21:00:33] total 672876
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas    584422 Jan 26 02:37 pilot3.tar.gz
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas      5111 Jan 26 02:38 queuedata.json
[2026-01-26 21:00:33] -rwx------. 1 boincer umatlas     36322 Jan 26 02:39 runpilot2-wrapper.sh
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas       100 Jan 26 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 21:00:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 19:43 run_atlas
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas       105 Jan 26 19:43 job.xml
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas 500050521 Jan 26 19:43 EVNT.48317869._000065.pool.root.1
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 19:43 start_atlas.sh
[2026-01-26 21:00:33] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 19:43 shared
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas    597756 Jan 26 19:43 input.tar.gz
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas         0 Jan 26 19:43 boinc_lockfile
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas      2515 Jan 26 19:43 pandaJob.out
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas        57 Jan 26 19:43 setup.sh.local
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas   1006441 Jan 26 19:44 agis_schedconf.cvmfs.json
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas   1516246 Jan 26 19:44 agis_ddmendpoints.agis.ALL.json
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas       430 Jan 26 19:45 workernode_map.json
[2026-01-26 21:00:33] drwx------. 5 boincer umatlas      4096 Jan 26 19:45 pilot3
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas 183097366 Jan 26 20:59 HITS.48317872._003259.pool.root.1
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas       530 Jan 26 20:59 boinc_task_state.xml
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas      1045 Jan 26 20:59 memory_monitor_summary.json
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas    371017 Jan 26 20:59 log.48317872._003259.job.log.tgz.1
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas      6363 Jan 26 20:59 heartbeat.json
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas      7172 Jan 26 21:00 init_data.xml
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas        95 Jan 26 21:00 pilot_heartbeat.json
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas        27 Jan 26 21:00 wrapper_checkpoint.txt
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 21:00 boinc_mmap_file
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas      4821 Jan 26 21:00 pilotlog.txt
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas    595213 Jan 26 21:00 log.48317872._003259.job.log.1
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas       357 Jan 26 21:00 output.list
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas       620 Jan 26 21:00 runtime_log
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas    983040 Jan 26 21:00 result.tar.gz
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas      9336 Jan 26 21:00 runtime_log.err
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas       656 Jan 26 21:00 6deMDmqMW48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmom2KDmht2EHn.diag
[2026-01-26 21:00:33] -rw-r--r--. 1 boincer umatlas     21783 Jan 26 21:00 stderr.txt
[2026-01-26 21:00:33] HITS file was successfully produced:
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas 183097366 Jan 26 20:59 shared/HITS.pool.root.1
[2026-01-26 21:00:33]  *** Contents of shared directory: ***
[2026-01-26 21:00:33] total 668708
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas 500050521 Jan 26 19:43 ATLAS.root_0
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 19:43 start_atlas.sh
[2026-01-26 21:00:33] -rw-r--r--. 2 boincer umatlas    597756 Jan 26 19:43 input.tar.gz
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas 183097366 Jan 26 20:59 HITS.pool.root.1
[2026-01-26 21:00:33] -rw-------. 1 boincer umatlas    983040 Jan 26 21:00 result.tar.gz
21:00:35 (2427508): run_atlas exited; CPU time 22138.706462
21:00:35 (2427508): called boinc_finish(0)

</stderr_txt>
]]>

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