Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
08:56:22 (139170): wrapper (7.7.26015): starting
08:56:22 (139170): wrapper: running run_atlas (--nthreads 8)
[2026-01-28 08:56:22] Arguments: --nthreads 8
[2026-01-28 08:56:22] Threads: 8
[2026-01-28 08:56:22] Checking for CVMFS
[2026-01-28 08:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 08:56:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 08:56:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 08:56:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 08:56:45] 2.13.3.0 139514 0 25572 155599 3 1 50008 4096001 0 130560 0 0 0.000 1336 159 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://131.225.189.146:3126 1
[2026-01-28 08:56:45] CVMFS is ok
[2026-01-28 08:56:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 08:56:45] Checking for apptainer binary...
[2026-01-28 08:56:45] apptainer is not installed, using version from CVMFS
[2026-01-28 08:56:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 08:57:29] gp
[2026-01-28 08:57:29] apptainer works
[2026-01-28 08:57:29] Set ATHENA_PROC_NUMBER=8
[2026-01-28 08:57:29] Set ATHENA_CORE_NUMBER=8
[2026-01-28 08:57:29] Starting ATLAS job with PandaID=6984228888
[2026-01-28 08:57:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 12:41:49]  *** The last 200 lines of the pilot log: ***
[2026-01-28 12:41:49] 2026-01-28 01:40:37,438 | INFO     | summary of transferred files:
[2026-01-28 12:41:49] 2026-01-28 01:40:37,438 | INFO     |  -- lfn=log.48317952._001352.job.log.tgz.1, status_code=0, status=transferred
[2026-01-28 12:41:49] 2026-01-28 01:40:37,438 | INFO     | stage-out finished correctly
[2026-01-28 12:41:49] 2026-01-28 01:40:38,421 | INFO     | time since job start (12614s) is within the limit (349056.0s)
[2026-01-28 12:41:49] 2026-01-28 01:40:38,512 | INFO     | monitor loop #1007: job 0:6984228888 is in state 'finished'
[2026-01-28 12:41:49] 2026-01-28 01:40:38,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-28 12:41:49] 2026-01-28 01:40:40,428 | INFO     | time since job start (12616s) is within the limit (349056.0s)
[2026-01-28 12:41:49] 2026-01-28 01:40:40,557 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-28 12:41:49] 2026-01-28 01:40:41,017 | INFO     | monitor loop #1008: job 0:6984228888 is in state 'finished'
[2026-01-28 12:41:49] 2026-01-28 01:40:41,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,016 | INFO     | job 6984228888 has state=finished
[2026-01-28 12:41:49] 2026-01-28 01:40:42,016 | INFO     | preparing for final server update for job 6984228888 in state='finished'
[2026-01-28 12:41:49] 2026-01-28 01:40:42,017 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6984228888/jobReport.json
[2026-01-28 12:41:49] 2026-01-28 01:40:42,020 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-01-28 12:41:49] 2026-01-28 01:40:42,021 | INFO     | this job has now completed (state=finished)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,028 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,029 | INFO     | log transfer has been attempted: DONE
[2026-01-28 12:41:49] 2026-01-28 01:40:42,029 | INFO     | job 6984228888 has finished - writing final server update
[2026-01-28 12:41:49] 2026-01-28 01:40:42,029 | INFO     | total number of processed events: 400 (read)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,031 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6984228888/memory_monitor_summary.json (trf name=prmon)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,032 | INFO     | extracted standard info from prmon json
[2026-01-28 12:41:49] 2026-01-28 01:40:42,032 | INFO     | extracted standard memory fields from prmon json
[2026-01-28 12:41:49] 2026-01-28 01:40:42,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-28 12:41:49] 2026-01-28 01:40:42,032 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-28 12:41:49] 2026-01-28 01:40:42,032 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-28 12:41:49] 2026-01-28 01:40:42,035 | INFO     | fitting pss+swap vs Time
[2026-01-28 12:41:49] 2026-01-28 01:40:42,035 | INFO     | sum of square deviations: 2632440055.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,036 | INFO     | sum of deviations: 504787280123.5
[2026-01-28 12:41:49] 2026-01-28 01:40:42,036 | INFO     | mean x: 1769558236.5
[2026-01-28 12:41:49] 2026-01-28 01:40:42,036 | INFO     | mean y: 1942768.2794117648
[2026-01-28 12:41:49] 2026-01-28 01:40:42,036 | INFO     | intersect: -339322209182.05707
[2026-01-28 12:41:49] 2026-01-28 01:40:42,037 | INFO     | chi2: 20.24915292692295
[2026-01-28 12:41:49] 2026-01-28 01:40:42,037 | INFO     | sum of square deviations: 2443580700.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | sum of deviations: 499187207606.00006
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | mean x: 1769558084.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | mean y: 1938036.2713567838
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | intersect: -361492470005.4126
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | chi2: 18.799786893312117
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | current chi2=18.799786893312117 (change=7.15766253947235 %)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | right removable region: 198
[2026-01-28 12:41:49] 2026-01-28 01:40:42,038 | INFO     | sum of square deviations: 2443580700.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,039 | INFO     | sum of deviations: 444647216735.00006
[2026-01-28 12:41:49] 2026-01-28 01:40:42,039 | INFO     | mean x: 1769558389.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,039 | INFO     | mean y: 1991337.9899497489
[2026-01-28 12:41:49] 2026-01-28 01:40:42,039 | INFO     | intersect: -321996464665.0881
[2026-01-28 12:41:49] 2026-01-28 01:40:42,040 | INFO     | chi2: 15.423452572443322
[2026-01-28 12:41:49] 2026-01-28 01:40:42,040 | INFO     | current chi2=15.423452572443322 (change=23.83161592929378 %)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,040 | INFO     | left removable region: 10
[2026-01-28 12:41:49] 2026-01-28 01:40:42,040 | INFO     | sum of square deviations: 2060343747.0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | sum of deviations: 380982552575.9999
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | mean x: 1769558358.5
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | mean y: 2035674.4680851065
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | intersect: -327210771089.0464
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | chi2: 9.876096550076442
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | current memory leak: 184.91 B/s (using 188 data points, chi2=9.88)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | could have reported an average CPU frequency of 2978 MHz (10 samples)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | ..............................
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | . Timing measurements:
[2026-01-28 12:41:49] 2026-01-28 01:40:42,041 | INFO     | . get job = 1 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . initial setup = 142 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . payload setup = 194 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . stage-in = 1 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . payload execution = 12394 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . stage-out = 5 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | . log creation = 0 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,042 | INFO     | ..............................
[2026-01-28 12:41:49] 2026-01-28 01:40:42,280 | INFO     | 
[2026-01-28 12:41:49] 2026-01-28 01:40:42,280 | INFO     | job summary report
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | --------------------------------------------------
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | PanDA job id: 6984228888
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | task id: 48317952
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | errors: (none)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | pilot state: finished 
[2026-01-28 12:41:49] 2026-01-28 01:40:42,281 | INFO     | transexitcode: 0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | exeerrorcode: 0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | exeerrordiag: 
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | exitcode: 0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | exitmsg: OK
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | cpuconsumptiontime: 50276 s
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | nevents: 400
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | neventsw: 0
[2026-01-28 12:41:49] 2026-01-28 01:40:42,282 | INFO     | pid: 162105
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | pgrp: 162105
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | corecount: 8
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | event service: False
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | sizes: {0: 2283147, 4: 2283839, 5: 2284122, 6: 2284328, 15: 2284356, 12592: 2314358, 12598: 2323370, 12601: 2323426, 12602: 2323620}
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | --------------------------------------------------
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | 
[2026-01-28 12:41:49] 2026-01-28 01:40:42,283 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-28 12:41:49] 2026-01-28 01:40:42,325 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,326 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,326 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,326 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,328 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,329 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-28 12:41:49] 2026-01-28 01:40:42,329 | INFO     | job 6984228888 has completed (purged errors)
[2026-01-28 12:41:49] 2026-01-28 01:40:42,329 | INFO     | overall cleanup function is called
[2026-01-28 12:41:49] 2026-01-28 01:40:43,341 | INFO     | --- collectZombieJob: --- 10, [162105]
[2026-01-28 12:41:49] 2026-01-28 01:40:43,341 | INFO     | zombie collector waiting for pid 162105
[2026-01-28 12:41:49] 2026-01-28 01:40:43,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 12:41:49] 2026-01-28 01:40:43,342 | INFO     | collected zombie processes
[2026-01-28 12:41:49] 2026-01-28 01:40:43,342 | INFO     | will attempt to kill all subprocesses of pid=162105
[2026-01-28 12:41:49] 2026-01-28 01:40:43,433 | INFO     | process IDs to be killed: [162105] (in reverse order)
[2026-01-28 12:41:49] 2026-01-28 01:40:43,483 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 12:41:49] 2026-01-28 01:40:43,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 12:41:49] 2026-01-28 01:40:43,486 | INFO     | did not find any defunct processes belonging to 162105
[2026-01-28 12:41:49] 2026-01-28 01:40:43,488 | INFO     | did not find any defunct processes belonging to 162105
[2026-01-28 12:41:49] 2026-01-28 01:40:43,488 | INFO     | ready for new job
[2026-01-28 12:41:49] 2026-01-28 01:40:43,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 12:41:49] 2026-01-28 01:40:43,489 | INFO     | **************************************
[2026-01-28 12:41:49] 2026-01-28 01:40:43,490 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 12:41:49] 2026-01-28 01:40:43,490 | INFO     | **************************************
[2026-01-28 12:41:49] 2026-01-28 01:40:43,490 | INFO     | 
[2026-01-28 12:41:49] 2026-01-28 01:40:43,490 | INFO     | architecture information:
[2026-01-28 12:41:49] 2026-01-28 01:40:43,491 | INFO     | executing command: cat /etc/os-release
[2026-01-28 12:41:49] 2026-01-28 01:40:43,507 | INFO     | cat /etc/os-release:
[2026-01-28 12:41:49] NAME="CentOS Linux"
[2026-01-28 12:41:49] VERSION="7 (Core)"
[2026-01-28 12:41:49] ID="centos"
[2026-01-28 12:41:49] ID_LIKE="rhel fedora"
[2026-01-28 12:41:49] VERSION_ID="7"
[2026-01-28 12:41:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 12:41:49] ANSI_COLOR="0;31"
[2026-01-28 12:41:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 12:41:49] HOME_URL="https://www.centos.org/"
[2026-01-28 12:41:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 12:41:49] 
[2026-01-28 12:41:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 12:41:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 12:41:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 12:41:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 12:41:49] 
[2026-01-28 12:41:49] 2026-01-28 01:40:43,507 | INFO     | **************************************
[2026-01-28 12:41:49] 2026-01-28 01:40:44,010 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-28 12:41:49] 2026-01-28 01:40:44,043 | INFO     | sufficient remaining disk space (27753709568 B)
[2026-01-28 12:41:49] 2026-01-28 01:40:44,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 12:41:49] 2026-01-28 01:40:44,044 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 12:41:49] 2026-01-28 01:40:44,044 | INFO     | update_server=False
[2026-01-28 12:41:49] 2026-01-28 01:40:44,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 12:41:49] 2026-01-28 01:40:44,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 12:41:49] 2026-01-28 01:40:44,064 | INFO     | all job control threads have been joined
[2026-01-28 12:41:49] 2026-01-28 01:40:44,208 | INFO     | all data control threads have been joined
[2026-01-28 12:41:49] 2026-01-28 01:40:44,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 12:41:49] 2026-01-28 01:40:44,530 | INFO     | aborting loop
[2026-01-28 12:41:49] 2026-01-28 01:40:44,926 | INFO     | all payload control threads have been joined
[2026-01-28 12:41:49] 2026-01-28 01:40:45,050 | INFO     | [job] retrieve thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,051 | INFO     | [job] queue monitor thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,070 | INFO     | [job] control thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,070 | INFO     | [data] copytool_in thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,214 | INFO     | [data] control thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,395 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,482 | INFO     | [job] validate thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 12:41:49] 2026-01-28 01:40:45,532 | INFO     | [job] job monitor thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,655 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,863 | INFO     | [payload] validate_post thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,899 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:45,932 | INFO     | [payload] control thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:46,101 | INFO     | [payload] failed_post thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:46,480 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:46,651 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 12:41:49] 2026-01-28 01:40:47,523 | INFO     | [data] copytool_out thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:40:50,657 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 12:41:49] 2026-01-28 01:41:13,624 | INFO     | PID=150295 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-28 12:41:49] 2026-01-28 01:41:13,625 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 12:41:49] 2026-01-28 01:41:13,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 12:41:49] 2026-01-28 01:41:13,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 12:41:49] 2026-01-28 01:41:42,187 | INFO     | [monitor] cgroup control has ended
[2026-01-28 12:41:49] 2026-01-28 01:41:42,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498317768512)>', '<ExcThread(monitor, started 140497490269952)>']
[2026-01-28 12:41:49] 2026-01-28 01:41:42,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 12:41:49] 2026-01-28 01:41:42,778 | INFO     | [monitor] control thread has ended
[2026-01-28 12:41:49] 2026-01-28 01:41:47,659 | INFO     | all workflow threads have been joined
[2026-01-28 12:41:49] 2026-01-28 01:41:47,667 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 12:41:49] 2026-01-28 01:41:47,667 | INFO     | traces error code: 0
[2026-01-28 12:41:49] 2026-01-28 01:41:47,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 12:41:49] 2026-01-28 01:41:47,782 [wrapper] ==== pilot stdout END ====
[2026-01-28 12:41:49] 2026-01-28 01:41:47,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 12:41:49] 2026-01-28 01:41:47,791 [wrapper] pilotpid: 150295
[2026-01-28 12:41:49] 2026-01-28 01:41:47,794 [wrapper] Pilot exit status: 0
[2026-01-28 12:41:49] 2026-01-28 01:41:49,418 [wrapper] pandaids: 6984228888
[2026-01-28 12:41:49] 2026-01-28 01:41:49,450 [wrapper] cleanup supervisor_pilot  218968 150296
[2026-01-28 12:41:49] 2026-01-28 01:41:49,453 [wrapper] Test setup, not cleaning
[2026-01-28 12:41:49] 2026-01-28 01:41:49,457 [wrapper] apfmon messages muted
[2026-01-28 12:41:49] 2026-01-28 01:41:49,462 [wrapper] ==== wrapper stdout END ====
[2026-01-28 12:41:49] 2026-01-28 01:41:49,466 [wrapper] ==== wrapper stderr END ====
[2026-01-28 12:41:49]  *** Error codes and diagnostics ***
[2026-01-28 12:41:49]     "exeErrorCode": 0,
[2026-01-28 12:41:49]     "exeErrorDiag": "",
[2026-01-28 12:41:49]     "pilotErrorCode": 0,
[2026-01-28 12:41:49]     "pilotErrorDiag": "",
[2026-01-28 12:41:49]  *** Listing of results directory ***
[2026-01-28 12:41:49] total 677452
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc    584422 Jan 26 22:54 pilot3.tar.gz
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc      5111 Jan 26 22:54 queuedata.json
[2026-01-28 12:41:49] -rwx------ 1 boinc boinc     36322 Jan 26 22:54 runpilot2-wrapper.sh
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc       100 Jan 28 08:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 12:41:49] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 08:56 run_atlas
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc       105 Jan 28 08:56 job.xml
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc 499591984 Jan 28 08:56 EVNT.48317949._000027.pool.root.1
[2026-01-28 12:41:49] drwxrwx--x 2 boinc boinc      4096 Jan 28 08:56 shared
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc    597752 Jan 28 08:56 input.tar.gz
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc     15845 Jan 28 08:56 start_atlas.sh
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc         0 Jan 28 08:56 boinc_setup_complete
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc      9216 Jan 28 08:56 init_data.xml
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc         0 Jan 28 08:56 boinc_lockfile
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc      2519 Jan 28 08:57 pandaJob.out
[2026-01-28 12:41:49] -rw------- 1 boinc boinc       416 Jan 28 09:08 workernode_map.json
[2026-01-28 12:41:49] -rw------- 1 boinc boinc   1005253 Jan 28 09:10 agis_schedconf.cvmfs.json
[2026-01-28 12:41:49] drwx------ 5 boinc boinc      4096 Jan 28 09:10 pilot3
[2026-01-28 12:41:49] -rw------- 1 boinc boinc 185725473 Jan 28 12:39 HITS.48317952._001352.pool.root.1
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc       532 Jan 28 12:40 boinc_task_state.xml
[2026-01-28 12:41:49] -rw------- 1 boinc boinc      1032 Jan 28 12:40 memory_monitor_summary.json
[2026-01-28 12:41:49] -rw------- 1 boinc boinc   1516246 Jan 28 12:40 agis_ddmendpoints.agis.ALL.json
[2026-01-28 12:41:49] -rw------- 1 boinc boinc    457755 Jan 28 12:40 log.48317952._001352.job.log.tgz.1
[2026-01-28 12:41:49] -rw------- 1 boinc boinc      6332 Jan 28 12:40 heartbeat.json
[2026-01-28 12:41:49] -rw------- 1 boinc boinc        95 Jan 28 12:41 pilot_heartbeat.json
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc      8192 Jan 28 12:41 boinc_mmap_file
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc        28 Jan 28 12:41 wrapper_checkpoint.txt
[2026-01-28 12:41:49] -rw------- 1 boinc boinc      4750 Jan 28 12:41 pilotlog.txt
[2026-01-28 12:41:49] -rw------- 1 boinc boinc   1764728 Jan 28 12:41 log.48317952._001352.job.log.1
[2026-01-28 12:41:49] -rw------- 1 boinc boinc       357 Jan 28 12:41 output.list
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc       620 Jan 28 12:41 runtime_log
[2026-01-28 12:41:49] -rw------- 1 boinc boinc   2242560 Jan 28 12:41 result.tar.gz
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc      8864 Jan 28 12:41 runtime_log.err
[2026-01-28 12:41:49] -rw------- 1 boinc boinc       646 Jan 28 12:41 6luNDm4La48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPA3KDmNGeLJm.diag
[2026-01-28 12:41:49] -rw-r--r-- 1 boinc boinc     21225 Jan 28 12:41 stderr.txt
[2026-01-28 12:41:49] HITS file was successfully produced:
[2026-01-28 12:41:49] -rw------- 1 boinc boinc 185725473 Jan 28 12:39 shared/HITS.pool.root.1
[2026-01-28 12:41:49]  *** Contents of shared directory: ***
[2026-01-28 12:41:49] total 672060
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc 499591984 Jan 28 08:56 ATLAS.root_0
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc    597752 Jan 28 08:56 input.tar.gz
[2026-01-28 12:41:49] -rw-r--r-- 2 boinc boinc     15845 Jan 28 08:56 start_atlas.sh
[2026-01-28 12:41:49] -rw------- 1 boinc boinc 185725473 Jan 28 12:39 HITS.pool.root.1
[2026-01-28 12:41:49] -rw------- 1 boinc boinc   2242560 Jan 28 12:41 result.tar.gz
12:41:50 (139170): run_atlas exited; CPU time 50429.963798
12:41:50 (139170): called boinc_finish(0)

</stderr_txt>
]]>

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