Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:00:29 (1314768): wrapper (7.7.26015): starting
12:00:29 (1314768): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 12:00:29] Arguments: --nthreads 3
[2026-01-27 12:00:29] Threads: 3
[2026-01-27 12:00:29] Checking for CVMFS
[2026-01-27 12:00:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 12:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 12:00:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 12:00:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 12:00:30] 2.9.2.0 4031871 9336 88560 155581 0 50 25183738 36864001 0 130560 0 4265814 99.987 304763 7050 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 12:00:30] CVMFS is ok
[2026-01-27 12:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 12:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 12:00:30] Further information can be found at the LHC@home message board.
[2026-01-27 12:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 12:00:30] Checking for apptainer binary...
[2026-01-27 12:00:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 12:00:30] Running /usr/bin/apptainer --version
[2026-01-27 12:00:30] apptainer version 1.4.1-1.1
[2026-01-27 12:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 12:00:30] magicA161a
[2026-01-27 12:00:30] apptainer works
[2026-01-27 12:00:30] Set ATHENA_PROC_NUMBER=3
[2026-01-27 12:00:30] Set ATHENA_CORE_NUMBER=3
[2026-01-27 12:00:30] Starting ATLAS job with PandaID=6984061938
[2026-01-27 12:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 13:19:51]  *** The last 200 lines of the pilot log: ***
[2026-01-27 13:19:51] 2026-01-27 12:19:20,720 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 13:19:51] 2026-01-27 12:19:20,720 | INFO     | job 6984061938 has completed (purged errors)
[2026-01-27 13:19:51] 2026-01-27 12:19:20,720 | INFO     | overall cleanup function is called
[2026-01-27 13:19:51] 2026-01-27 12:19:20,752 | WARNING  | process 1323238 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 13:19:51] 2026-01-27 12:19:20,781 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:19:51] 2026-01-27 12:19:20,781 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 13:19:51] 2026-01-27 12:19:20,781 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-27 13:19:51] 2026-01-27 12:19:20,781 | WARNING  | maxPSS not found in memory monitor output
[2026-01-27 13:19:51] 2026-01-27 12:19:20,782 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6984061938/payload.stdout) since it has not been created yet
[2026-01-27 13:19:51] 2026-01-27 12:19:20,782 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:19:51] 2026-01-27 12:19:20,792 | INFO     | sufficient remaining disk space (379533131776 B)
[2026-01-27 13:19:51] 2026-01-27 12:19:20,792 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-27 13:19:51] 2026-01-27 12:19:20,792 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6984061938/HITS.48317872._002953.pool.root.1 since it does not exist
[2026-01-27 13:19:51] 2026-01-27 12:19:20,830 | INFO     | number of running child processes to parent process 1323238: 1
[2026-01-27 13:19:51] 2026-01-27 12:19:20,830 | INFO     | maximum number of monitored processes: 6
[2026-01-27 13:19:51] 2026-01-27 12:19:20,830 | INFO     | aborting job monitoring since job object (job id=6984061938) has expired
[2026-01-27 13:19:51] 2026-01-27 12:19:21,728 | INFO     | --- collectZombieJob: --- 10, [1323238]
[2026-01-27 13:19:51] 2026-01-27 12:19:21,728 | INFO     | zombie collector waiting for pid 1323238
[2026-01-27 13:19:51] 2026-01-27 12:19:21,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 13:19:51] 2026-01-27 12:19:21,728 | INFO     | collected zombie processes
[2026-01-27 13:19:51] 2026-01-27 12:19:21,728 | INFO     | will attempt to kill all subprocesses of pid=1323238
[2026-01-27 13:19:51] 2026-01-27 12:19:21,768 | INFO     | process IDs to be killed: [1323238] (in reverse order)
[2026-01-27 13:19:51] 2026-01-27 12:19:21,792 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 13:19:51] 2026-01-27 12:19:21,792 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 13:19:51] 2026-01-27 12:19:21,793 | INFO     | did not find any defunct processes belonging to 1323238
[2026-01-27 13:19:51] 2026-01-27 12:19:21,794 | INFO     | did not find any defunct processes belonging to 1323238
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | ready for new job
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | **************************************
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | **************************************
[2026-01-27 13:19:51] 2026-01-27 12:19:21,795 | INFO     | 
[2026-01-27 13:19:51] 2026-01-27 12:19:21,796 | INFO     | architecture information:
[2026-01-27 13:19:51] 2026-01-27 12:19:21,796 | INFO     | executing command: cat /etc/os-release
[2026-01-27 13:19:51] 2026-01-27 12:19:21,804 | INFO     | cat /etc/os-release:
[2026-01-27 13:19:51] NAME="CentOS Linux"
[2026-01-27 13:19:51] VERSION="7 (Core)"
[2026-01-27 13:19:51] ID="centos"
[2026-01-27 13:19:51] ID_LIKE="rhel fedora"
[2026-01-27 13:19:51] VERSION_ID="7"
[2026-01-27 13:19:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 13:19:51] ANSI_COLOR="0;31"
[2026-01-27 13:19:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 13:19:51] HOME_URL="https://www.centos.org/"
[2026-01-27 13:19:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 13:19:51] 
[2026-01-27 13:19:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 13:19:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 13:19:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 13:19:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 13:19:51] 
[2026-01-27 13:19:51] 2026-01-27 12:19:21,804 | INFO     | **************************************
[2026-01-27 13:19:51] 2026-01-27 12:19:22,307 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | INFO     | sufficient remaining disk space (379534180352 B)
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | INFO     | update_server=False
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 13:19:51] 2026-01-27 12:19:22,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | INFO     | aborting loop
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 13:19:51] 2026-01-27 12:19:22,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 13:19:51] 2026-01-27 12:19:22,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 13:19:51] 2026-01-27 12:19:22,346 | INFO     | all data control threads have been joined
[2026-01-27 13:19:51] 2026-01-27 12:19:22,887 | INFO     | job.realtimelogging is not enabled
[2026-01-27 13:19:51] 2026-01-27 12:19:23,209 | INFO     | all job control threads have been joined
[2026-01-27 13:19:51] 2026-01-27 12:19:23,326 | INFO     | [job] retrieve thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,326 | INFO     | [job] queue monitor thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,326 | INFO     | [job] job monitor thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,352 | INFO     | [data] control thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,358 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,488 | INFO     | [data] copytool_in thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:23,683 | INFO     | all payload control threads have been joined
[2026-01-27 13:19:51] 2026-01-27 12:19:23,892 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,215 | INFO     | [job] control thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,298 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,323 | INFO     | [payload] failed_post thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,334 | INFO     | [data] copytool_out thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,687 | INFO     | [payload] control thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,699 | INFO     | [job] validate thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,802 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:24,846 | INFO     | [payload] validate_post thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:26,328 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 13:19:51] 2026-01-27 12:19:44,695 | INFO     | [monitor] cgroup control has ended
[2026-01-27 13:19:51] 2026-01-27 12:19:46,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622864164672)>', '<ExcThread(monitor, started 140622371473152)>']
[2026-01-27 13:19:51] 2026-01-27 12:19:47,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 13:19:51] 2026-01-27 12:19:47,451 | INFO     | [monitor] control thread has ended
[2026-01-27 13:19:51] 2026-01-27 12:19:51,832 | INFO     | all workflow threads have been joined
[2026-01-27 13:19:51] 2026-01-27 12:19:51,833 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 13:19:51] 2026-01-27 12:19:51,833 | INFO     | traces error code: 0
[2026-01-27 13:19:51] 2026-01-27 12:19:51,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 13:19:51] 2026-01-27 12:19:51,881 [wrapper] ==== pilot stdout END ====
[2026-01-27 13:19:51] 2026-01-27 12:19:51,884 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 13:19:51] 2026-01-27 12:19:51,886 [wrapper] pilotpid: 1318816
[2026-01-27 13:19:51] 2026-01-27 12:19:51,888 [wrapper] Pilot exit status: 0
[2026-01-27 13:19:51] 2026-01-27 12:19:51,895 [wrapper] pandaids: 6984061938
[2026-01-27 13:19:51] 2026-01-27 12:19:51,910 [wrapper] cleanup supervisor_pilot 1328622 1318817
[2026-01-27 13:19:51] 2026-01-27 12:19:51,913 [wrapper] Test setup, not cleaning
[2026-01-27 13:19:51] 2026-01-27 12:19:51,915 [wrapper] apfmon messages muted
[2026-01-27 13:19:51] 2026-01-27 12:19:51,917 [wrapper] ==== wrapper stdout END ====
[2026-01-27 13:19:51] 2026-01-27 12:19:51,919 [wrapper] ==== wrapper stderr END ====
[2026-01-27 13:19:51]  *** Error codes and diagnostics ***
[2026-01-27 13:19:51]     "exeErrorCode": 0,
[2026-01-27 13:19:51]     "exeErrorDiag": "",
[2026-01-27 13:19:51]     "pilotErrorCode": 0,
[2026-01-27 13:19:51]     "pilotErrorDiag": "",
[2026-01-27 13:19:51]  *** Listing of results directory ***
[2026-01-27 13:19:51] total 667372
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc    584422 Jan 26 08:37 pilot3.tar.gz
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc      5111 Jan 26 08:38 queuedata.json
[2026-01-27 13:19:51] -rwx------ 1 boinc boinc     36322 Jan 26 08:38 runpilot2-wrapper.sh
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc       100 Jan 27 12:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 13:19:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 12:00 run_atlas
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc       105 Jan 27 12:00 job.xml
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc 495171394 Jan 27 12:00 EVNT.48317869._000059.pool.root.1
[2026-01-27 13:19:51] drwxrwx--x 2 boinc boinc      4096 Jan 27 12:00 shared
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc    597754 Jan 27 12:00 input.tar.gz
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:00 start_atlas.sh
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:00 boinc_setup_complete
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc      6448 Jan 27 12:00 init_data.xml
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc         0 Jan 27 12:00 boinc_lockfile
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc      2515 Jan 27 12:00 pandaJob.out
[2026-01-27 13:19:51] -rw------- 1 boinc boinc   1002845 Jan 27 12:00 agis_schedconf.cvmfs.json
[2026-01-27 13:19:51] -rw------- 1 boinc boinc   1516246 Jan 27 12:00 agis_ddmendpoints.agis.ALL.json
[2026-01-27 13:19:51] -rw------- 1 boinc boinc       426 Jan 27 12:00 workernode_map.json
[2026-01-27 13:19:51] drwx------ 5 boinc boinc      4096 Jan 27 12:00 pilot3
[2026-01-27 13:19:51] -rw------- 1 boinc boinc        95 Jan 27 13:18 pilot_heartbeat.json
[2026-01-27 13:19:51] -rw------- 1 boinc boinc 182335645 Jan 27 13:19 HITS.48317872._002953.pool.root.1
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc       530 Jan 27 13:19 boinc_task_state.xml
[2026-01-27 13:19:51] -rw------- 1 boinc boinc      1013 Jan 27 13:19 memory_monitor_summary.json
[2026-01-27 13:19:51] -rw------- 1 boinc boinc    280827 Jan 27 13:19 log.48317872._002953.job.log.tgz.1
[2026-01-27 13:19:51] -rw------- 1 boinc boinc      6302 Jan 27 13:19 heartbeat.json
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc        27 Jan 27 13:19 wrapper_checkpoint.txt
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc      8192 Jan 27 13:19 boinc_mmap_file
[2026-01-27 13:19:51] -rw------- 1 boinc boinc      4624 Jan 27 13:19 pilotlog.txt
[2026-01-27 13:19:51] -rw------- 1 boinc boinc    694974 Jan 27 13:19 log.48317872._002953.job.log.1
[2026-01-27 13:19:51] -rw------- 1 boinc boinc       357 Jan 27 13:19 output.list
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc       620 Jan 27 13:19 runtime_log
[2026-01-27 13:19:51] -rw------- 1 boinc boinc    993280 Jan 27 13:19 result.tar.gz
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc      8916 Jan 27 13:19 runtime_log.err
[2026-01-27 13:19:51] -rw------- 1 boinc boinc       661 Jan 27 13:19 Yo9MDmeMW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmII9KDmjsgdfm.diag
[2026-01-27 13:19:51] -rw-r--r-- 1 boinc boinc     12709 Jan 27 13:19 stderr.txt
[2026-01-27 13:19:51] HITS file was successfully produced:
[2026-01-27 13:19:51] -rw------- 1 boinc boinc 182335645 Jan 27 13:19 shared/HITS.pool.root.1
[2026-01-27 13:19:51]  *** Contents of shared directory: ***
[2026-01-27 13:19:51] total 663212
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc 495171394 Jan 27 12:00 ATLAS.root_0
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc    597754 Jan 27 12:00 input.tar.gz
[2026-01-27 13:19:51] -rw-r--r-- 2 boinc boinc     15845 Jan 27 12:00 start_atlas.sh
[2026-01-27 13:19:51] -rw------- 1 boinc boinc 182335645 Jan 27 13:19 HITS.pool.root.1
[2026-01-27 13:19:51] -rw------- 1 boinc boinc    993280 Jan 27 13:19 result.tar.gz
13:19:53 (1314768): run_atlas exited; CPU time 13549.119735
13:19:53 (1314768): called boinc_finish(0)

</stderr_txt>
]]>

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