Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:32:51 (904198): wrapper (7.7.26015): starting
18:32:51 (904198): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 18:32:51] Arguments: --nthreads 12
[2026-01-26 18:32:51] Threads: 12
[2026-01-26 18:32:51] Checking for CVMFS
[2026-01-26 18:32:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:32:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:32:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:32:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:32:53] 2.13.3.0 810126 89 48524 155566 2 188 2504965 4096000 922 130560 0 277852 99.993 6944 2105 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-26 18:32:53] CVMFS is ok
[2026-01-26 18:32:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:32:53] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-26 18:32:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-26 18:32:53] Further information can be found at the LHC@home message board.
[2026-01-26 18:32:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:32:53] Checking for apptainer binary...
[2026-01-26 18:32:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 18:32:53] Running /usr/bin/apptainer --version
[2026-01-26 18:32:53] apptainer version 1.4.5
[2026-01-26 18:32:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:32:53] zhiwei-Z790-Riptide-WiFi
[2026-01-26 18:32:53] apptainer works
[2026-01-26 18:32:53] Set ATHENA_PROC_NUMBER=12
[2026-01-26 18:32:53] Set ATHENA_CORE_NUMBER=12
[2026-01-26 18:32:53] Starting ATLAS job with PandaID=6984061921
[2026-01-26 18:32:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 18:59:28]  *** The last 200 lines of the pilot log: ***
[2026-01-26 18:59:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 18:59:28]  replicas=None
[2026-01-26 18:59:28]  scope=mc23_13p6TeV
[2026-01-26 18:59:28]  status=None
[2026-01-26 18:59:28]  status_code=0
[2026-01-26 18:59:28]  storage_token=
[2026-01-26 18:59:28]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6984061921/log.48317872._002936.job.log.tgz.1
[2026-01-26 18:59:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/0a/log.48317872._002936.job.log.tgz.1
[2026-01-26 18:59:28]  workdir=None
[2026-01-26 18:59:28] ]
[2026-01-26 18:59:28] 2026-01-26 23:58:51,644 | INFO     | transferring file log.48317872._002936.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6984061921/log.48317872._002936.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-26 18:59:28] 2026-01-26 23:58:51,644 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6984061921/log.48317872._002936.job.log.tgz.1 /var/lib/boinc/slots/0/log.48317872._002936.job
[2026-01-26 18:59:28] 2026-01-26 23:58:51,652 | INFO     | adding to output.list: log.48317872._002936.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/0a/log.48317872._002936.job.log.tg
[2026-01-26 18:59:28] 2026-01-26 23:58:51,652 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 18:59:28] 2026-01-26 23:58:51,652 | INFO     | summary of transferred files:
[2026-01-26 18:59:28] 2026-01-26 23:58:51,652 | INFO     |  -- lfn=log.48317872._002936.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 18:59:28] 2026-01-26 23:58:51,652 | INFO     | stage-out finished correctly
[2026-01-26 18:59:28] 2026-01-26 23:58:52,179 | INFO     | PID=908395 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 18:59:28] 2026-01-26 23:58:52,180 | INFO     | .. there are 2 such processes running
[2026-01-26 18:59:28] 2026-01-26 23:58:53,088 | WARNING  | process 912958 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 18:59:28] 2026-01-26 23:58:53,088 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984061921/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 18:59:28] 2026-01-26 23:58:53,115 | INFO     | number of running child processes to parent process 912958: 1
[2026-01-26 18:59:28] 2026-01-26 23:58:53,115 | INFO     | maximum number of monitored processes: 6
[2026-01-26 18:59:28] 2026-01-26 23:58:53,180 | INFO     | time since job start (1549s) is within the limit (349056.0s)
[2026-01-26 18:59:28] 2026-01-26 23:58:54,944 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 18:59:28] 2026-01-26 23:58:55,184 | INFO     | time since job start (1551s) is within the limit (349056.0s)
[2026-01-26 18:59:28] 2026-01-26 23:58:55,617 | INFO     | monitor loop #122: job 0:6984061921 is in state 'finished'
[2026-01-26 18:59:28] 2026-01-26 23:58:55,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,380 | INFO     | job 6984061921 has state=finished
[2026-01-26 18:59:28] 2026-01-26 23:58:56,380 | INFO     | preparing for final server update for job 6984061921 in state='finished'
[2026-01-26 18:59:28] 2026-01-26 23:58:56,380 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-6984061921/jobReport.json
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | this job has now completed (state=finished)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | log transfer has been attempted: DONE
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | job 6984061921 has finished - writing final server update
[2026-01-26 18:59:28] 2026-01-26 23:58:56,381 | INFO     | total number of processed events: 400 (read)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,383 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984061921/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,383 | INFO     | extracted standard info from prmon json
[2026-01-26 18:59:28] 2026-01-26 23:58:56,383 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 18:59:28] 2026-01-26 23:58:56,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | fitting pss+swap vs Time
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | sum of square deviations: 2120970.0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | sum of deviations: 328940853.0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | mean x: 1769471253.0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | mean y: 2931023.3684210526
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | intersect: -274424044992.69916
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | chi2: 0.007564545747371381
[2026-01-26 18:59:28] 2026-01-26 23:58:56,384 | INFO     | current memory leak: 155.09 B/s (using 19 data points, chi2=0.01)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | could have reported an average CPU frequency of 3071 MHz (4 samples)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | ..............................
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . Timing measurements:
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . get job = 0 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . initial setup = 4 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . payload setup = 1 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . stage-in = 0 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . payload execution = 1531 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . stage-out = 0 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | . log creation = 0 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,385 | INFO     | ..............................
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | 
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | job summary report
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | --------------------------------------------------
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | PanDA job id: 6984061921
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | task id: 48317872
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | errors: (none)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | pilot state: finished 
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | transexitcode: 0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | exeerrorcode: 0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | exeerrordiag: 
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | exitcode: 0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | exitmsg: OK
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | cpuconsumptiontime: 16669 s
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | nevents: 400
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | neventsw: 0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | pid: 912958
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | pgrp: 912958
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | corecount: 12
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | event service: False
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | sizes: {0: 2284232, 11: 2284232, 1536: 2317972, 1540: 2317972, 1541: 2318166}
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | --------------------------------------------------
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | 
[2026-01-26 18:59:28] 2026-01-26 23:58:56,408 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-26 18:59:28] 2026-01-26 23:58:56,417 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,417 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | job 6984061921 has completed (purged errors)
[2026-01-26 18:59:28] 2026-01-26 23:58:56,418 | INFO     | overall cleanup function is called
[2026-01-26 18:59:28] 2026-01-26 23:58:57,424 | INFO     | --- collectZombieJob: --- 10, [912958]
[2026-01-26 18:59:28] 2026-01-26 23:58:57,424 | INFO     | zombie collector waiting for pid 912958
[2026-01-26 18:59:28] 2026-01-26 23:58:57,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 18:59:28] 2026-01-26 23:58:57,424 | INFO     | collected zombie processes
[2026-01-26 18:59:28] 2026-01-26 23:58:57,424 | INFO     | will attempt to kill all subprocesses of pid=912958
[2026-01-26 18:59:28] 2026-01-26 23:58:57,463 | INFO     | process IDs to be killed: [912958] (in reverse order)
[2026-01-26 18:59:28] 2026-01-26 23:58:57,486 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 18:59:28] 2026-01-26 23:58:57,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 18:59:28] 2026-01-26 23:58:57,487 | INFO     | did not find any defunct processes belonging to 912958
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | did not find any defunct processes belonging to 912958
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | ready for new job
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | **************************************
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | **************************************
[2026-01-26 18:59:28] 2026-01-26 23:58:57,488 | INFO     | 
[2026-01-26 18:59:28] 2026-01-26 23:58:57,489 | INFO     | architecture information:
[2026-01-26 18:59:28] 2026-01-26 23:58:57,489 | INFO     | executing command: cat /etc/os-release
[2026-01-26 18:59:28] 2026-01-26 23:58:57,494 | INFO     | cat /etc/os-release:
[2026-01-26 18:59:28] NAME="CentOS Linux"
[2026-01-26 18:59:28] VERSION="7 (Core)"
[2026-01-26 18:59:28] ID="centos"
[2026-01-26 18:59:28] ID_LIKE="rhel fedora"
[2026-01-26 18:59:28] VERSION_ID="7"
[2026-01-26 18:59:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 18:59:28] ANSI_COLOR="0;31"
[2026-01-26 18:59:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 18:59:28] HOME_URL="https://www.centos.org/"
[2026-01-26 18:59:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 18:59:28] 
[2026-01-26 18:59:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 18:59:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 18:59:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 18:59:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 18:59:28] 
[2026-01-26 18:59:28] 2026-01-26 23:58:57,494 | INFO     | **************************************
[2026-01-26 18:59:28] 2026-01-26 23:58:57,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | INFO     | sufficient remaining disk space (1816023531520 B)
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | INFO     | update_server=False
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 18:59:28] 2026-01-26 23:58:58,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:59:28] 2026-01-26 23:58:58,120 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 18:59:28] 2026-01-26 23:58:58,120 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 18:59:28] 2026-01-26 23:58:58,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 18:59:28] 2026-01-26 23:58:58,120 | INFO     | will abort loop
[2026-01-26 18:59:28] 2026-01-26 23:58:58,123 | INFO     | all data control threads have been joined
[2026-01-26 18:59:28] 2026-01-26 23:58:58,473 | INFO     | all payload control threads have been joined
[2026-01-26 18:59:28] 2026-01-26 23:58:59,009 | INFO     | [job] queue monitor thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,010 | INFO     | [job] retrieve thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,126 | INFO     | [job] job monitor thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,126 | INFO     | [data] control thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,475 | INFO     | [payload] control thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,511 | INFO     | [payload] failed_post thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,686 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:58:59,696 | INFO     | all job control threads have been joined
[2026-01-26 18:59:28] 2026-01-26 23:58:59,915 | INFO     | [job] validate thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,010 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,010 | INFO     | [data] copytool_out thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,127 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,201 | INFO     | [payload] validate_post thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,239 | INFO     | [data] copytool_in thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,701 | INFO     | [job] control thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:00,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 18:59:28] 2026-01-26 23:59:04,990 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:06,078 | INFO     | [monitor] cgroup control has ended
[2026-01-26 18:59:28] 2026-01-26 23:59:08,803 | INFO     | job.realtimelogging is not enabled
[2026-01-26 18:59:28] 2026-01-26 23:59:09,808 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 18:59:28] 2026-01-26 23:59:09,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135057345529664)>', '<ExcThread(monitor, started 135056706230016)>']
[2026-01-26 18:59:28] 2026-01-26 23:59:14,898 | INFO     | all workflow threads have been joined
[2026-01-26 18:59:28] 2026-01-26 23:59:14,898 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 18:59:28] 2026-01-26 23:59:14,898 | INFO     | traces error code: 0
[2026-01-26 18:59:28] 2026-01-26 23:59:14,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 18:59:28] 2026-01-26 23:59:28,328 | INFO     | PID=908395 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | INFO     | .. there are 2 such processes running
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 18:59:28] 2026-01-26 23:59:28,329 | INFO     | [monitor] control thread has ended
[2026-01-26 18:59:28] 2026-01-26 23:59:28,367 [wrapper] ==== pilot stdout END ====
[2026-01-26 18:59:28] 2026-01-26 23:59:28,368 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 18:59:28] 2026-01-26 23:59:28,369 [wrapper] pilotpid: 908395
[2026-01-26 18:59:28] 2026-01-26 23:59:28,370 [wrapper] Pilot exit status: 0
[2026-01-26 18:59:28] 2026-01-26 23:59:28,373 [wrapper] pandaids: 6984061921
[2026-01-26 18:59:28] 2026-01-26 23:59:28,389 [wrapper] cleanup supervisor_pilot  917710 908396
[2026-01-26 18:59:28] 2026-01-26 23:59:28,390 [wrapper] Test setup, not cleaning
[2026-01-26 18:59:28] 2026-01-26 23:59:28,391 [wrapper] apfmon messages muted
[2026-01-26 18:59:28] 2026-01-26 23:59:28,392 [wrapper] ==== wrapper stdout END ====
[2026-01-26 18:59:28] 2026-01-26 23:59:28,392 [wrapper] ==== wrapper stderr END ====
[2026-01-26 18:59:28]  *** Error codes and diagnostics ***
[2026-01-26 18:59:28]     "exeErrorCode": 0,
[2026-01-26 18:59:28]     "exeErrorDiag": "",
[2026-01-26 18:59:28]     "pilotErrorCode": 0,
[2026-01-26 18:59:28]     "pilotErrorDiag": "",
[2026-01-26 18:59:28]  *** Listing of results directory ***
[2026-01-26 18:59:28] total 668308
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:37 pilot3.tar.gz
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:38 queuedata.json
[2026-01-26 18:59:28] -rwx------ 1 boinc boinc     36322 Jan 26 02:38 runpilot2-wrapper.sh
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc       100 Jan 26 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 18:59:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 18:32 run_atlas
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc       105 Jan 26 18:32 job.xml
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc 495171394 Jan 26 18:32 EVNT.48317869._000059.pool.root.1
[2026-01-26 18:59:28] drwxrwx--x 2 boinc boinc      4096 Jan 26 18:32 shared
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc    597751 Jan 26 18:32 input.tar.gz
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:32 start_atlas.sh
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:32 boinc_setup_complete
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc      8824 Jan 26 18:32 init_data.xml
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc         0 Jan 26 18:32 boinc_lockfile
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc      2514 Jan 26 18:32 pandaJob.out
[2026-01-26 18:59:28] -rw------- 1 boinc boinc   1006441 Jan 26 18:33 agis_schedconf.cvmfs.json
[2026-01-26 18:59:28] -rw------- 1 boinc boinc   1516246 Jan 26 18:33 agis_ddmendpoints.agis.ALL.json
[2026-01-26 18:59:28] -rw------- 1 boinc boinc       433 Jan 26 18:33 workernode_map.json
[2026-01-26 18:59:28] drwx------ 5 boinc boinc      4096 Jan 26 18:33 pilot3
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc       530 Jan 26 18:58 boinc_task_state.xml
[2026-01-26 18:59:28] -rw------- 1 boinc boinc 183998367 Jan 26 18:58 HITS.48317872._002936.pool.root.1
[2026-01-26 18:59:28] -rw------- 1 boinc boinc      1017 Jan 26 18:58 memory_monitor_summary.json
[2026-01-26 18:59:28] -rw------- 1 boinc boinc    352232 Jan 26 18:58 log.48317872._002936.job.log.tgz.1
[2026-01-26 18:59:28] -rw------- 1 boinc boinc      6328 Jan 26 18:58 heartbeat.json
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc      8192 Jan 26 18:59 boinc_mmap_file
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc        27 Jan 26 18:59 wrapper_checkpoint.txt
[2026-01-26 18:59:28] -rw------- 1 boinc boinc       821 Jan 26 18:59 pilotlog.txt
[2026-01-26 18:59:28] -rw------- 1 boinc boinc        95 Jan 26 18:59 pilot_heartbeat.json
[2026-01-26 18:59:28] -rw------- 1 boinc boinc    266793 Jan 26 18:59 log.48317872._002936.job.log.1
[2026-01-26 18:59:28] -rw------- 1 boinc boinc       357 Jan 26 18:59 output.list
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc       620 Jan 26 18:59 runtime_log
[2026-01-26 18:59:28] -rw------- 1 boinc boinc    634880 Jan 26 18:59 result.tar.gz
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc      8854 Jan 26 18:59 runtime_log.err
[2026-01-26 18:59:28] -rw------- 1 boinc boinc       656 Jan 26 18:59 pKyMDmeMW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAI9KDm2us05n.diag
[2026-01-26 18:59:28] -rw-r--r-- 1 boinc boinc     21986 Jan 26 18:59 stderr.txt
[2026-01-26 18:59:28] HITS file was successfully produced:
[2026-01-26 18:59:28] -rw------- 1 boinc boinc 183998367 Jan 26 18:58 shared/HITS.pool.root.1
[2026-01-26 18:59:28]  *** Contents of shared directory: ***
[2026-01-26 18:59:28] total 664484
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc 495171394 Jan 26 18:32 ATLAS.root_0
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc    597751 Jan 26 18:32 input.tar.gz
[2026-01-26 18:59:28] -rw-r--r-- 2 boinc boinc     15845 Jan 26 18:32 start_atlas.sh
[2026-01-26 18:59:28] -rw------- 1 boinc boinc 183998367 Jan 26 18:58 HITS.pool.root.1
[2026-01-26 18:59:28] -rw------- 1 boinc boinc    634880 Jan 26 18:59 result.tar.gz
18:59:30 (904198): run_atlas exited; CPU time 16671.557127
18:59:30 (904198): called boinc_finish(0)

</stderr_txt>
]]>

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