Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:44:21 (2698552): wrapper (7.7.26015): starting
04:44:21 (2698552): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 04:44:21] Arguments: --nthreads 2
[2026-01-27 04:44:21] Threads: 2
[2026-01-27 04:44:21] Checking for CVMFS
[2026-01-27 04:44:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:44:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:44:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:44:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:44:22] 2.9.2.0 1478735 9163 63556 155571 3 50 23535723 36864000 0 130560 0 2731893 99.981 295205 7611 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 04:44:22] CVMFS is ok
[2026-01-27 04:44:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:44:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:44:22] Further information can be found at the LHC@home message board.
[2026-01-27 04:44:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:44:22] Checking for apptainer binary...
[2026-01-27 04:44:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:44:22] Running /usr/bin/apptainer --version
[2026-01-27 04:44:22] apptainer version 1.4.1-1.1
[2026-01-27 04:44:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:44:22] thA389
[2026-01-27 04:44:22] apptainer works
[2026-01-27 04:44:22] Set ATHENA_PROC_NUMBER=2
[2026-01-27 04:44:22] Set ATHENA_CORE_NUMBER=2
[2026-01-27 04:44:22] Starting ATLAS job with PandaID=6983771364
[2026-01-27 04:44:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:13:00]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:13:00] 2026-01-27 06:12:19,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,584 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,584 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,585 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:13:00] 2026-01-27 06:12:19,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,585 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:13:00] 2026-01-27 06:12:19,585 | INFO     | job 6983771364 has completed (purged errors)
[2026-01-27 07:13:00] 2026-01-27 06:12:19,586 | INFO     | overall cleanup function is called
[2026-01-27 07:13:00] 2026-01-27 06:12:20,592 | INFO     | --- collectZombieJob: --- 10, [2707017]
[2026-01-27 07:13:00] 2026-01-27 06:12:20,593 | INFO     | zombie collector waiting for pid 2707017
[2026-01-27 07:13:00] 2026-01-27 06:12:20,593 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:13:00] 2026-01-27 06:12:20,593 | INFO     | collected zombie processes
[2026-01-27 07:13:00] 2026-01-27 06:12:20,593 | INFO     | will attempt to kill all subprocesses of pid=2707017
[2026-01-27 07:13:00] 2026-01-27 06:12:20,639 | INFO     | process IDs to be killed: [2707017] (in reverse order)
[2026-01-27 07:13:00] 2026-01-27 06:12:20,663 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:13:00] 2026-01-27 06:12:20,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:13:00] 2026-01-27 06:12:20,665 | INFO     | did not find any defunct processes belonging to 2707017
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | did not find any defunct processes belonging to 2707017
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | ready for new job
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | **************************************
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | **************************************
[2026-01-27 07:13:00] 2026-01-27 06:12:20,666 | INFO     | 
[2026-01-27 07:13:00] 2026-01-27 06:12:20,667 | INFO     | architecture information:
[2026-01-27 07:13:00] 2026-01-27 06:12:20,667 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:13:00] 2026-01-27 06:12:20,674 | INFO     | cat /etc/os-release:
[2026-01-27 07:13:00] NAME="CentOS Linux"
[2026-01-27 07:13:00] VERSION="7 (Core)"
[2026-01-27 07:13:00] ID="centos"
[2026-01-27 07:13:00] ID_LIKE="rhel fedora"
[2026-01-27 07:13:00] VERSION_ID="7"
[2026-01-27 07:13:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:13:00] ANSI_COLOR="0;31"
[2026-01-27 07:13:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:13:00] HOME_URL="https://www.centos.org/"
[2026-01-27 07:13:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:13:00] 
[2026-01-27 07:13:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:13:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:13:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:13:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:13:00] 
[2026-01-27 07:13:00] 2026-01-27 06:12:20,675 | INFO     | **************************************
[2026-01-27 07:13:00] 2026-01-27 06:12:21,177 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 07:13:00] 2026-01-27 06:12:21,189 | INFO     | sufficient remaining disk space (837377064960 B)
[2026-01-27 07:13:00] 2026-01-27 06:12:21,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:13:00] 2026-01-27 06:12:21,189 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:13:00] 2026-01-27 06:12:21,189 | INFO     | update_server=False
[2026-01-27 07:13:00] 2026-01-27 06:12:21,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:13:00] 2026-01-27 06:12:21,270 | INFO     | all payload control threads have been joined
[2026-01-27 07:13:00] 2026-01-27 06:12:21,361 | INFO     | all data control threads have been joined
[2026-01-27 07:13:00] 2026-01-27 06:12:21,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:13:00] 2026-01-27 06:12:21,414 | INFO     | aborting loop
[2026-01-27 07:13:00] 2026-01-27 06:12:21,960 | INFO     | all job control threads have been joined
[2026-01-27 07:13:00] 2026-01-27 06:12:22,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:13:00] 2026-01-27 06:12:22,194 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,271 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,276 | INFO     | [payload] control thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,367 | INFO     | [data] control thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,420 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,584 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:13:00] 2026-01-27 06:12:22,931 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:22,965 | INFO     | [job] control thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:23,370 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:23,436 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:23,570 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:23,622 | INFO     | [job] validate thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:24,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:13:00] 2026-01-27 06:12:24,071 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:25,070 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:26,597 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:31,888 | INFO     | job.realtimelogging is not enabled
[2026-01-27 07:13:00] 2026-01-27 06:12:32,913 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:13:00] 2026-01-27 06:12:52,237 | INFO     | PID=2702581 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:13:00] 2026-01-27 06:12:52,237 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:13:00] 2026-01-27 06:12:52,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:13:00] 2026-01-27 06:12:52,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:13:00] 2026-01-27 06:12:54,324 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:13:00] 2026-01-27 06:12:55,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970429613888)>', '<ExcThread(monitor, started 139969939097344)>']
[2026-01-27 07:13:00] 2026-01-27 06:12:56,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:13:00] 2026-01-27 06:12:56,259 | INFO     | [monitor] control thread has ended
[2026-01-27 07:13:00] 2026-01-27 06:13:00,641 | INFO     | all workflow threads have been joined
[2026-01-27 07:13:00] 2026-01-27 06:13:00,641 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:13:00] 2026-01-27 06:13:00,642 | INFO     | traces error code: 0
[2026-01-27 07:13:00] 2026-01-27 06:13:00,642 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:13:00] 2026-01-27 06:13:00,687 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:13:00] 2026-01-27 06:13:00,689 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:13:00] 2026-01-27 06:13:00,691 [wrapper] pilotpid: 2702581
[2026-01-27 07:13:00] 2026-01-27 06:13:00,693 [wrapper] Pilot exit status: 0
[2026-01-27 07:13:00] 2026-01-27 06:13:00,698 [wrapper] pandaids: 6983771364
[2026-01-27 07:13:00] 2026-01-27 06:13:00,713 [wrapper] cleanup supervisor_pilot 2717850 2702582
[2026-01-27 07:13:00] 2026-01-27 06:13:00,715 [wrapper] Test setup, not cleaning
[2026-01-27 07:13:00] 2026-01-27 06:13:00,717 [wrapper] apfmon messages muted
[2026-01-27 07:13:00] 2026-01-27 06:13:00,719 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:13:00] 2026-01-27 06:13:00,721 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:13:00]  *** Error codes and diagnostics ***
[2026-01-27 07:13:00]     "exeErrorCode": 0,
[2026-01-27 07:13:00]     "exeErrorDiag": "",
[2026-01-27 07:13:00]     "pilotErrorCode": 0,
[2026-01-27 07:13:00]     "pilotErrorDiag": "",
[2026-01-27 07:13:00]  *** Listing of results directory ***
[2026-01-27 07:13:00] total 409724
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:12 queuedata.json
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 07:13:00] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc       100 Jan 27 04:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:13:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 04:44 run_atlas
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc       105 Jan 27 04:44 job.xml
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc 248996819 Jan 27 04:44 EVNT.48298565._000023.pool.root.1
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc    597765 Jan 27 04:44 input.tar.gz
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:44 start_atlas.sh
[2026-01-27 07:13:00] drwxrwx--x 2 boinc boinc      4096 Jan 27 04:44 shared
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:44 boinc_setup_complete
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc      6282 Jan 27 04:44 init_data.xml
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:44 boinc_lockfile
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc      2614 Jan 27 04:44 pandaJob.out
[2026-01-27 07:13:00] -rw------- 1 boinc boinc   1006433 Jan 27 04:44 agis_schedconf.cvmfs.json
[2026-01-27 07:13:00] -rw------- 1 boinc boinc   1516246 Jan 27 04:44 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:13:00] -rw------- 1 boinc boinc       419 Jan 27 04:44 workernode_map.json
[2026-01-27 07:13:00] drwx------ 5 boinc boinc      4096 Jan 27 04:44 pilot3
[2026-01-27 07:13:00] -rw------- 1 boinc boinc 163527209 Jan 27 07:11 HITS.48298567._000561.pool.root.1
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc       529 Jan 27 07:12 boinc_task_state.xml
[2026-01-27 07:13:00] -rw------- 1 boinc boinc      1010 Jan 27 07:12 memory_monitor_summary.json
[2026-01-27 07:13:00] -rw------- 1 boinc boinc    292039 Jan 27 07:12 log.48298567._000561.job.log.tgz.1
[2026-01-27 07:13:00] -rw------- 1 boinc boinc      6282 Jan 27 07:12 heartbeat.json
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc      8192 Jan 27 07:12 boinc_mmap_file
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc        27 Jan 27 07:12 wrapper_checkpoint.txt
[2026-01-27 07:13:00] -rw------- 1 boinc boinc        95 Jan 27 07:12 pilot_heartbeat.json
[2026-01-27 07:13:00] -rw------- 1 boinc boinc      4820 Jan 27 07:13 pilotlog.txt
[2026-01-27 07:13:00] -rw------- 1 boinc boinc   1260699 Jan 27 07:13 log.48298567._000561.job.log.1
[2026-01-27 07:13:00] -rw------- 1 boinc boinc       357 Jan 27 07:13 output.list
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc       620 Jan 27 07:13 runtime_log
[2026-01-27 07:13:00] -rw------- 1 boinc boinc   1566720 Jan 27 07:13 result.tar.gz
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc      8896 Jan 27 07:13 runtime_log.err
[2026-01-27 07:13:00] -rw------- 1 boinc boinc       657 Jan 27 07:13 mKNLDmIKQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjf8KDmNqLejn.diag
[2026-01-27 07:13:00] -rw-r--r-- 1 boinc boinc     11710 Jan 27 07:13 stderr.txt
[2026-01-27 07:13:00] HITS file was successfully produced:
[2026-01-27 07:13:00] -rw------- 1 boinc boinc 163527209 Jan 27 07:11 shared/HITS.pool.root.1
[2026-01-27 07:13:00]  *** Contents of shared directory: ***
[2026-01-27 07:13:00] total 405000
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc 248996819 Jan 27 04:44 ATLAS.root_0
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc    597765 Jan 27 04:44 input.tar.gz
[2026-01-27 07:13:00] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:44 start_atlas.sh
[2026-01-27 07:13:00] -rw------- 1 boinc boinc 163527209 Jan 27 07:11 HITS.pool.root.1
[2026-01-27 07:13:00] -rw------- 1 boinc boinc   1566720 Jan 27 07:13 result.tar.gz
07:13:02 (2698552): run_atlas exited; CPU time 17296.125594
07:13:02 (2698552): called boinc_finish(0)

</stderr_txt>
]]>

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