Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:43:09 (1759298): wrapper (7.7.26015): starting
21:43:09 (1759298): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 21:43:09] Arguments: --nthreads 2
[2026-01-26 21:43:09] Threads: 2
[2026-01-26 21:43:09] Checking for CVMFS
[2026-01-26 21:43:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 21:43:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 21:43:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 21:43:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 21:43:09] 2.9.2.0 878484 8560 67616 155561 3 50 20734384 36864001 0 130560 0 2636309 99.981 274187 7345 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 21:43:09] CVMFS is ok
[2026-01-26 21:43:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 21:43:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 21:43:09] Further information can be found at the LHC@home message board.
[2026-01-26 21:43:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 21:43:09] Checking for apptainer binary...
[2026-01-26 21:43:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 21:43:09] Running /usr/bin/apptainer --version
[2026-01-26 21:43:09] apptainer version 1.4.1-1.1
[2026-01-26 21:43:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 21:43:09] madmaxA277a
[2026-01-26 21:43:09] apptainer works
[2026-01-26 21:43:09] Set ATHENA_PROC_NUMBER=2
[2026-01-26 21:43:09] Set ATHENA_CORE_NUMBER=2
[2026-01-26 21:43:09] Starting ATLAS job with PandaID=6982522426
[2026-01-26 21:43:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 23:42:46]  *** The last 200 lines of the pilot log: ***
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | job 6982522426 has completed (purged errors)
[2026-01-26 23:42:46] 2026-01-26 22:42:03,165 | INFO     | overall cleanup function is called
[2026-01-26 23:42:46] 2026-01-26 22:42:04,171 | INFO     | --- collectZombieJob: --- 10, [1767732]
[2026-01-26 23:42:46] 2026-01-26 22:42:04,172 | INFO     | zombie collector waiting for pid 1767732
[2026-01-26 23:42:46] 2026-01-26 22:42:04,172 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 23:42:46] 2026-01-26 22:42:04,172 | INFO     | collected zombie processes
[2026-01-26 23:42:46] 2026-01-26 22:42:04,172 | INFO     | will attempt to kill all subprocesses of pid=1767732
[2026-01-26 23:42:46] 2026-01-26 22:42:04,203 | INFO     | process IDs to be killed: [1767732] (in reverse order)
[2026-01-26 23:42:46] 2026-01-26 22:42:04,224 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 23:42:46] 2026-01-26 22:42:04,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 23:42:46] 2026-01-26 22:42:04,225 | INFO     | did not find any defunct processes belonging to 1767732
[2026-01-26 23:42:46] 2026-01-26 22:42:04,225 | INFO     | did not find any defunct processes belonging to 1767732
[2026-01-26 23:42:46] 2026-01-26 22:42:04,225 | INFO     | ready for new job
[2026-01-26 23:42:46] 2026-01-26 22:42:04,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | **************************************
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | **************************************
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | 
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | architecture information:
[2026-01-26 23:42:46] 2026-01-26 22:42:04,226 | INFO     | executing command: cat /etc/os-release
[2026-01-26 23:42:46] 2026-01-26 22:42:04,235 | INFO     | cat /etc/os-release:
[2026-01-26 23:42:46] NAME="CentOS Linux"
[2026-01-26 23:42:46] VERSION="7 (Core)"
[2026-01-26 23:42:46] ID="centos"
[2026-01-26 23:42:46] ID_LIKE="rhel fedora"
[2026-01-26 23:42:46] VERSION_ID="7"
[2026-01-26 23:42:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 23:42:46] ANSI_COLOR="0;31"
[2026-01-26 23:42:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 23:42:46] HOME_URL="https://www.centos.org/"
[2026-01-26 23:42:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 23:42:46] 
[2026-01-26 23:42:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 23:42:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 23:42:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 23:42:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 23:42:46] 
[2026-01-26 23:42:46] 2026-01-26 22:42:04,235 | INFO     | **************************************
[2026-01-26 23:42:46] 2026-01-26 22:42:04,738 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 23:42:46] 2026-01-26 22:42:04,749 | INFO     | sufficient remaining disk space (496482910208 B)
[2026-01-26 23:42:46] 2026-01-26 22:42:04,749 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 23:42:46] 2026-01-26 22:42:04,749 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 23:42:46] 2026-01-26 22:42:04,750 | INFO     | update_server=False
[2026-01-26 23:42:46] 2026-01-26 22:42:04,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 23:42:46] 2026-01-26 22:42:04,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:42:46] 2026-01-26 22:42:04,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 23:42:46] 2026-01-26 22:42:05,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 23:42:46] 2026-01-26 22:42:05,283 | INFO     | aborting loop
[2026-01-26 23:42:46] 2026-01-26 22:42:05,572 | INFO     | all job control threads have been joined
[2026-01-26 23:42:46] 2026-01-26 22:42:05,580 | INFO     | all data control threads have been joined
[2026-01-26 23:42:46] 2026-01-26 22:42:05,755 | INFO     | [job] queue monitor thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:05,756 | INFO     | [job] retrieve thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:05,786 | INFO     | all payload control threads have been joined
[2026-01-26 23:42:46] 2026-01-26 22:42:05,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 23:42:46] 2026-01-26 22:42:05,944 | INFO     | [payload] validate_post thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,209 | INFO     | [payload] failed_post thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,289 | INFO     | [job] job monitor thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,487 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,561 | INFO     | [job] validate thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,578 | INFO     | [job] control thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,585 | INFO     | [data] control thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,689 | INFO     | [data] copytool_in thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,792 | INFO     | [payload] control thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:06,870 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:07,125 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:07,929 | INFO     | [data] copytool_out thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:08,756 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:15,754 | INFO     | job.realtimelogging is not enabled
[2026-01-26 23:42:46] 2026-01-26 22:42:16,760 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 23:42:46] 2026-01-26 22:42:35,632 | INFO     | PID=1763326 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 23:42:46] 2026-01-26 22:42:35,632 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 23:42:46] 2026-01-26 22:42:35,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 23:42:46] 2026-01-26 22:42:35,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 23:42:46] 2026-01-26 22:42:41,142 | INFO     | [monitor] cgroup control has ended
[2026-01-26 23:42:46] 2026-01-26 22:42:41,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400470357824)>', '<ExcThread(monitor, started 140399972697856)>']
[2026-01-26 23:42:46] 2026-01-26 22:42:41,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 23:42:46] 2026-01-26 22:42:41,664 | INFO     | [monitor] control thread has ended
[2026-01-26 23:42:46] 2026-01-26 22:42:46,478 | INFO     | all workflow threads have been joined
[2026-01-26 23:42:46] 2026-01-26 22:42:46,478 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 23:42:46] 2026-01-26 22:42:46,479 | INFO     | traces error code: 0
[2026-01-26 23:42:46] 2026-01-26 22:42:46,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 23:42:46] 2026-01-26 22:42:46,521 [wrapper] ==== pilot stdout END ====
[2026-01-26 23:42:46] 2026-01-26 22:42:46,524 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 23:42:46] 2026-01-26 22:42:46,525 [wrapper] pilotpid: 1763326
[2026-01-26 23:42:46] 2026-01-26 22:42:46,527 [wrapper] Pilot exit status: 0
[2026-01-26 23:42:46] 2026-01-26 22:42:46,532 [wrapper] pandaids: 6982522426
[2026-01-26 23:42:46] 2026-01-26 22:42:46,545 [wrapper] cleanup supervisor_pilot 1772605 1763327
[2026-01-26 23:42:46] 2026-01-26 22:42:46,547 [wrapper] Test setup, not cleaning
[2026-01-26 23:42:46] 2026-01-26 22:42:46,549 [wrapper] apfmon messages muted
[2026-01-26 23:42:46] 2026-01-26 22:42:46,551 [wrapper] ==== wrapper stdout END ====
[2026-01-26 23:42:46] 2026-01-26 22:42:46,553 [wrapper] ==== wrapper stderr END ====
[2026-01-26 23:42:46]  *** Error codes and diagnostics ***
[2026-01-26 23:42:46]     "exeErrorCode": 0,
[2026-01-26 23:42:46]     "exeErrorDiag": "",
[2026-01-26 23:42:46]     "pilotErrorCode": 0,
[2026-01-26 23:42:46]     "pilotErrorDiag": "",
[2026-01-26 23:42:46]  *** Listing of results directory ***
[2026-01-26 23:42:46] total 668516
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc    584422 Jan 25 05:52 pilot3.tar.gz
[2026-01-26 23:42:46] -rwx------ 1 boinc boinc     36322 Jan 25 05:53 runpilot2-wrapper.sh
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc      5111 Jan 25 05:54 queuedata.json
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc       100 Jan 26 21:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 23:42:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 21:43 run_atlas
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc       105 Jan 26 21:43 job.xml
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc 496556497 Jan 26 21:43 EVNT.48310721._000110.pool.root.1
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc    597764 Jan 26 21:43 input.tar.gz
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:43 start_atlas.sh
[2026-01-26 23:42:46] drwxrwx--x 2 boinc boinc      4096 Jan 26 21:43 shared
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:43 boinc_setup_complete
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc      6210 Jan 26 21:43 init_data.xml
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:43 boinc_lockfile
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc      2533 Jan 26 21:43 pandaJob.out
[2026-01-26 23:42:46] -rw------- 1 boinc boinc   1006457 Jan 26 21:43 agis_schedconf.cvmfs.json
[2026-01-26 23:42:46] -rw------- 1 boinc boinc   1516246 Jan 26 21:43 agis_ddmendpoints.agis.ALL.json
[2026-01-26 23:42:46] -rw------- 1 boinc boinc       431 Jan 26 21:43 workernode_map.json
[2026-01-26 23:42:46] drwx------ 5 boinc boinc      4096 Jan 26 21:43 pilot3
[2026-01-26 23:42:46] -rw------- 1 boinc boinc 181500384 Jan 26 23:41 HITS.48310724._005460.pool.root.1
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc       530 Jan 26 23:41 boinc_task_state.xml
[2026-01-26 23:42:46] -rw------- 1 boinc boinc        95 Jan 26 23:41 pilot_heartbeat.json
[2026-01-26 23:42:46] -rw------- 1 boinc boinc      1030 Jan 26 23:41 memory_monitor_summary.json
[2026-01-26 23:42:46] -rw------- 1 boinc boinc    264058 Jan 26 23:42 log.48310724._005460.job.log.tgz.1
[2026-01-26 23:42:46] -rw------- 1 boinc boinc      6316 Jan 26 23:42 heartbeat.json
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc      8192 Jan 26 23:42 boinc_mmap_file
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc        27 Jan 26 23:42 wrapper_checkpoint.txt
[2026-01-26 23:42:46] -rw------- 1 boinc boinc      4820 Jan 26 23:42 pilotlog.txt
[2026-01-26 23:42:46] -rw------- 1 boinc boinc   1022665 Jan 26 23:42 log.48310724._005460.job.log.1
[2026-01-26 23:42:46] -rw------- 1 boinc boinc       357 Jan 26 23:42 output.list
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc       620 Jan 26 23:42 runtime_log
[2026-01-26 23:42:46] -rw------- 1 boinc boinc   1300480 Jan 26 23:42 result.tar.gz
[2026-01-26 23:42:46] -rw------- 1 boinc boinc       662 Jan 26 23:42 otAODmhI738nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPg6KDmaf6Ngm.diag
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc      8921 Jan 26 23:42 runtime_log.err
[2026-01-26 23:42:46] -rw-r--r-- 1 boinc boinc     12341 Jan 26 23:42 stderr.txt
[2026-01-26 23:42:46] HITS file was successfully produced:
[2026-01-26 23:42:46] -rw------- 1 boinc boinc 181500384 Jan 26 23:41 shared/HITS.pool.root.1
[2026-01-26 23:42:46]  *** Contents of shared directory: ***
[2026-01-26 23:42:46] total 664048
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc 496556497 Jan 26 21:43 ATLAS.root_0
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc    597764 Jan 26 21:43 input.tar.gz
[2026-01-26 23:42:46] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:43 start_atlas.sh
[2026-01-26 23:42:46] -rw------- 1 boinc boinc 181500384 Jan 26 23:41 HITS.pool.root.1
[2026-01-26 23:42:46] -rw------- 1 boinc boinc   1300480 Jan 26 23:42 result.tar.gz
23:42:48 (1759298): run_atlas exited; CPU time 13813.903688
23:42:48 (1759298): called boinc_finish(0)

</stderr_txt>
]]>

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