Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:19 (1617710): wrapper (7.7.26015): starting
08:33:19 (1617710): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 08:33:19] Arguments: --nthreads 3
[2026-01-27 08:33:19] Threads: 3
[2026-01-27 08:33:19] Checking for CVMFS
[2026-01-27 08:33:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 08:33:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 08:33:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 08:33:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 08:33:20] 2.9.2.0 2182370 9435 91772 155577 3 49 26554526 36864000 0 130560 0 4229803 99.986 306683 6482 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 08:33:20] CVMFS is ok
[2026-01-27 08:33:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 08:33:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 08:33:20] Further information can be found at the LHC@home message board.
[2026-01-27 08:33:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 08:33:20] Checking for apptainer binary...
[2026-01-27 08:33:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 08:33:20] Running /usr/bin/apptainer --version
[2026-01-27 08:33:20] apptainer version 1.4.1-1.1
[2026-01-27 08:33:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 08:33:20] atlasA303
[2026-01-27 08:33:20] apptainer works
[2026-01-27 08:33:20] Set ATHENA_PROC_NUMBER=3
[2026-01-27 08:33:20] Set ATHENA_CORE_NUMBER=3
[2026-01-27 08:33:20] Starting ATLAS job with PandaID=6983773509
[2026-01-27 08:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 09:56:45]  *** The last 200 lines of the pilot log: ***
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 09:56:45] 2026-01-27 08:56:13,352 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 09:56:45] 2026-01-27 08:56:13,353 | INFO     | job 6983773509 has completed (purged errors)
[2026-01-27 09:56:45] 2026-01-27 08:56:13,353 | INFO     | overall cleanup function is called
[2026-01-27 09:56:45] 2026-01-27 08:56:14,359 | INFO     | --- collectZombieJob: --- 10, [1626285]
[2026-01-27 09:56:45] 2026-01-27 08:56:14,359 | INFO     | zombie collector waiting for pid 1626285
[2026-01-27 09:56:45] 2026-01-27 08:56:14,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 09:56:45] 2026-01-27 08:56:14,360 | INFO     | collected zombie processes
[2026-01-27 09:56:45] 2026-01-27 08:56:14,360 | INFO     | will attempt to kill all subprocesses of pid=1626285
[2026-01-27 09:56:45] 2026-01-27 08:56:14,404 | INFO     | process IDs to be killed: [1626285] (in reverse order)
[2026-01-27 09:56:45] 2026-01-27 08:56:14,429 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 09:56:45] 2026-01-27 08:56:14,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 09:56:45] 2026-01-27 08:56:14,430 | INFO     | did not find any defunct processes belonging to 1626285
[2026-01-27 09:56:45] 2026-01-27 08:56:14,431 | INFO     | did not find any defunct processes belonging to 1626285
[2026-01-27 09:56:45] 2026-01-27 08:56:14,431 | INFO     | ready for new job
[2026-01-27 09:56:45] 2026-01-27 08:56:14,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | **************************************
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | **************************************
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | 
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | architecture information:
[2026-01-27 09:56:45] 2026-01-27 08:56:14,432 | INFO     | executing command: cat /etc/os-release
[2026-01-27 09:56:45] 2026-01-27 08:56:14,441 | INFO     | cat /etc/os-release:
[2026-01-27 09:56:45] NAME="CentOS Linux"
[2026-01-27 09:56:45] VERSION="7 (Core)"
[2026-01-27 09:56:45] ID="centos"
[2026-01-27 09:56:45] ID_LIKE="rhel fedora"
[2026-01-27 09:56:45] VERSION_ID="7"
[2026-01-27 09:56:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 09:56:45] ANSI_COLOR="0;31"
[2026-01-27 09:56:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 09:56:45] HOME_URL="https://www.centos.org/"
[2026-01-27 09:56:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 09:56:45] 
[2026-01-27 09:56:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 09:56:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 09:56:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 09:56:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 09:56:45] 
[2026-01-27 09:56:45] 2026-01-27 08:56:14,441 | INFO     | **************************************
[2026-01-27 09:56:45] 2026-01-27 08:56:14,945 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | INFO     | sufficient remaining disk space (375643963392 B)
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | INFO     | update_server=False
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:56:45] 2026-01-27 08:56:14,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 09:56:45] 2026-01-27 08:56:15,062 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 09:56:45] 2026-01-27 08:56:15,062 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 09:56:45] 2026-01-27 08:56:15,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 09:56:45] 2026-01-27 08:56:15,062 | INFO     | will abort loop
[2026-01-27 09:56:45] 2026-01-27 08:56:15,409 | INFO     | all payload control threads have been joined
[2026-01-27 09:56:45] 2026-01-27 08:56:15,695 | INFO     | all data control threads have been joined
[2026-01-27 09:56:45] 2026-01-27 08:56:15,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 09:56:45] 2026-01-27 08:56:15,963 | INFO     | [job] queue monitor thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:15,963 | INFO     | [job] retrieve thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,068 | INFO     | [job] job monitor thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,076 | INFO     | [data] copytool_in thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,415 | INFO     | [payload] control thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,505 | INFO     | all job control threads have been joined
[2026-01-27 09:56:45] 2026-01-27 08:56:16,565 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,701 | INFO     | [data] control thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:16,995 | INFO     | [payload] validate_post thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,145 | INFO     | [payload] failed_post thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,313 | INFO     | [job] validate thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,397 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,415 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,506 | INFO     | [job] control thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:17,853 | INFO     | [data] copytool_out thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:18,965 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:25,536 | INFO     | job.realtimelogging is not enabled
[2026-01-27 09:56:45] 2026-01-27 08:56:26,542 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 09:56:45] 2026-01-27 08:56:33,512 | INFO     | [monitor] cgroup control has ended
[2026-01-27 09:56:45] 2026-01-27 08:56:35,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430790399808)>', '<ExcThread(monitor, started 140430297511680)>']
[2026-01-27 09:56:45] 2026-01-27 08:56:40,310 | INFO     | all workflow threads have been joined
[2026-01-27 09:56:45] 2026-01-27 08:56:40,310 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 09:56:45] 2026-01-27 08:56:40,311 | INFO     | traces error code: 0
[2026-01-27 09:56:45] 2026-01-27 08:56:40,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | INFO     | PID=1621777 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 09:56:45] 2026-01-27 08:56:45,228 | INFO     | [monitor] control thread has ended
[2026-01-27 09:56:45] 2026-01-27 08:56:45,274 [wrapper] ==== pilot stdout END ====
[2026-01-27 09:56:45] 2026-01-27 08:56:45,277 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 09:56:45] 2026-01-27 08:56:45,279 [wrapper] pilotpid: 1621777
[2026-01-27 09:56:45] 2026-01-27 08:56:45,281 [wrapper] Pilot exit status: 0
[2026-01-27 09:56:45] 2026-01-27 08:56:45,288 [wrapper] pandaids: 6983773509
[2026-01-27 09:56:45] 2026-01-27 08:56:45,304 [wrapper] cleanup supervisor_pilot 1648576 1621778
[2026-01-27 09:56:45] 2026-01-27 08:56:45,306 [wrapper] Test setup, not cleaning
[2026-01-27 09:56:45] 2026-01-27 08:56:45,309 [wrapper] apfmon messages muted
[2026-01-27 09:56:45] 2026-01-27 08:56:45,311 [wrapper] ==== wrapper stdout END ====
[2026-01-27 09:56:45] 2026-01-27 08:56:45,313 [wrapper] ==== wrapper stderr END ====
[2026-01-27 09:56:45]  *** Error codes and diagnostics ***
[2026-01-27 09:56:45]     "exeErrorCode": 0,
[2026-01-27 09:56:45]     "exeErrorDiag": "",
[2026-01-27 09:56:45]     "pilotErrorCode": 0,
[2026-01-27 09:56:45]     "pilotErrorDiag": "",
[2026-01-27 09:56:45]  *** Listing of results directory ***
[2026-01-27 09:56:45] total 679232
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 09:56:45] -rwx------ 1 boinc boinc     36322 Jan 26 06:17 runpilot2-wrapper.sh
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:21 queuedata.json
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc       100 Jan 27 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 09:56:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 08:33 run_atlas
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc       105 Jan 27 08:33 job.xml
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc 505214256 Jan 27 08:33 EVNT.48318032._000066.pool.root.1
[2026-01-27 09:56:45] drwxrwx--x 2 boinc boinc      4096 Jan 27 08:33 shared
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc    597765 Jan 27 08:33 input.tar.gz
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:33 start_atlas.sh
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:33 boinc_setup_complete
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc      6447 Jan 27 08:33 init_data.xml
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc         0 Jan 27 08:33 boinc_lockfile
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc      2535 Jan 27 08:33 pandaJob.out
[2026-01-27 09:56:45] -rw------- 1 boinc boinc   1003573 Jan 27 08:33 agis_schedconf.cvmfs.json
[2026-01-27 09:56:45] -rw------- 1 boinc boinc   1516246 Jan 27 08:33 agis_ddmendpoints.agis.ALL.json
[2026-01-27 09:56:45] -rw------- 1 boinc boinc       425 Jan 27 08:33 workernode_map.json
[2026-01-27 09:56:45] drwx------ 5 boinc boinc      4096 Jan 27 08:33 pilot3
[2026-01-27 09:56:45] -rw------- 1 boinc boinc        95 Jan 27 09:55 pilot_heartbeat.json
[2026-01-27 09:56:45] -rw------- 1 boinc boinc 184363727 Jan 27 09:55 HITS.48318034._002637.pool.root.1
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc       530 Jan 27 09:55 boinc_task_state.xml
[2026-01-27 09:56:45] -rw------- 1 boinc boinc      1020 Jan 27 09:56 memory_monitor_summary.json
[2026-01-27 09:56:45] -rw------- 1 boinc boinc    283614 Jan 27 09:56 log.48318034._002637.job.log.tgz.1
[2026-01-27 09:56:45] -rw------- 1 boinc boinc      6312 Jan 27 09:56 heartbeat.json
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc        27 Jan 27 09:56 wrapper_checkpoint.txt
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc      8192 Jan 27 09:56 boinc_mmap_file
[2026-01-27 09:56:45] -rw------- 1 boinc boinc       747 Jan 27 09:56 pilotlog.txt
[2026-01-27 09:56:45] -rw------- 1 boinc boinc    728270 Jan 27 09:56 log.48318034._002637.job.log.1
[2026-01-27 09:56:45] -rw------- 1 boinc boinc       357 Jan 27 09:56 output.list
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc       620 Jan 27 09:56 runtime_log
[2026-01-27 09:56:45] -rw------- 1 boinc boinc   1034240 Jan 27 09:56 result.tar.gz
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc      8911 Jan 27 09:56 runtime_log.err
[2026-01-27 09:56:45] -rw------- 1 boinc boinc       660 Jan 27 09:56 bHwLDm59T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzE9KDmwU6LNn.diag
[2026-01-27 09:56:45] -rw-r--r-- 1 boinc boinc     11741 Jan 27 09:56 stderr.txt
[2026-01-27 09:56:45] HITS file was successfully produced:
[2026-01-27 09:56:45] -rw------- 1 boinc boinc 184363727 Jan 27 09:55 shared/HITS.pool.root.1
[2026-01-27 09:56:45]  *** Contents of shared directory: ***
[2026-01-27 09:56:45] total 675040
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc 505214256 Jan 27 08:33 ATLAS.root_0
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc    597765 Jan 27 08:33 input.tar.gz
[2026-01-27 09:56:45] -rw-r--r-- 2 boinc boinc     15845 Jan 27 08:33 start_atlas.sh
[2026-01-27 09:56:45] -rw------- 1 boinc boinc 184363727 Jan 27 09:55 HITS.pool.root.1
[2026-01-27 09:56:45] -rw------- 1 boinc boinc   1034240 Jan 27 09:56 result.tar.gz
09:56:47 (1617710): run_atlas exited; CPU time 14235.479718
09:56:47 (1617710): called boinc_finish(0)

</stderr_txt>
]]>

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