Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:13 (4090707): wrapper (7.7.26015): starting
15:39:13 (4090707): wrapper: running run_atlas (--nthreads 9)
[2026-01-26 15:39:13] Arguments: --nthreads 9
[2026-01-26 15:39:13] Threads: 9
[2026-01-26 15:39:13] Checking for CVMFS
[2026-01-26 15:39:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 15:39:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 15:39:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 15:39:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 15:39:15] 2.13.3.0 10299 118380 709156 155561 3 645 31269582 32935937 47900 16776704 0 1095863233 99.774 606288787 28902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 15:39:15] CVMFS is ok
[2026-01-26 15:39:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 15:39:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 15:39:15] Further information can be found at the LHC@home message board.
[2026-01-26 15:39:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 15:39:15] Checking for apptainer binary...
[2026-01-26 15:39:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 15:39:15] Running /usr/bin/apptainer --version
[2026-01-26 15:39:15] apptainer version 1.4.5-2.el9
[2026-01-26 15:39:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 15:39:16] c-3-40.aglt2.org
[2026-01-26 15:39:16] apptainer works
[2026-01-26 15:39:16] Set ATHENA_PROC_NUMBER=9
[2026-01-26 15:39:16] Set ATHENA_CORE_NUMBER=9
[2026-01-26 15:39:16] Starting ATLAS job with PandaID=6983773438
[2026-01-26 15:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:04 (4090707): BOINC client no longer exists - exiting
19:20:04 (4090707): timer handler: client dead, exiting
19:31:17 (1691550): wrapper (7.7.26015): starting
19:31:17 (1691550): wrapper: running run_atlas (--nthreads 9)
[2026-01-26 19:31:17] Arguments: --nthreads 9
[2026-01-26 19:31:17] Threads: 9
[2026-01-26 19:31:17] This job has been restarted, cleaning up previous attempt
[2026-01-26 19:31:17] Checking for CVMFS
[2026-01-26 19:31:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:31:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:31:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:31:19] 2.13.3.0 10299 118612 698564 155567 3 109 23131484 32935936 41225 16776704 0 1098767302 99.774 609202422 28892 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-26 19:31:19] CVMFS is ok
[2026-01-26 19:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:31:19] Further information can be found at the LHC@home message board.
[2026-01-26 19:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:31:19] Checking for apptainer binary...
[2026-01-26 19:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:31:19] Running /usr/bin/apptainer --version
[2026-01-26 19:31:19] apptainer version 1.4.5-2.el9
[2026-01-26 19:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:31:19] c-3-40.aglt2.org
[2026-01-26 19:31:19] apptainer works
[2026-01-26 19:31:19] Set ATHENA_PROC_NUMBER=9
[2026-01-26 19:31:19] Set ATHENA_CORE_NUMBER=9
[2026-01-26 19:31:19] Starting ATLAS job with PandaID=6983773438
[2026-01-26 19:31:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:27:41]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:27:41] 2026-01-27 12:26:27,294 | INFO     | total number of processed events: 400 (read)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,382 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6983773438/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,382 | INFO     | extracted standard info from prmon json
[2026-01-27 07:27:41] 2026-01-27 12:26:27,382 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 07:27:41] 2026-01-27 12:26:27,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 07:27:41] 2026-01-27 12:26:27,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 07:27:41] 2026-01-27 12:26:27,383 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 07:27:41] 2026-01-27 12:26:27,426 | INFO     | fitting pss+swap vs Time
[2026-01-27 07:27:41] 2026-01-27 12:26:27,427 | INFO     | sum of square deviations: 106815312902.44534
[2026-01-27 07:27:41] 2026-01-27 12:26:27,498 | INFO     | sum of deviations: 138169563104.94995
[2026-01-27 07:27:41] 2026-01-27 12:26:27,498 | INFO     | mean x: 1769495362.128388
[2026-01-27 07:27:41] 2026-01-27 12:26:27,498 | INFO     | mean y: 2540892.389443652
[2026-01-27 07:27:41] 2026-01-27 12:26:27,499 | INFO     | intersect: -2286366891.1303983
[2026-01-27 07:27:41] 2026-01-27 12:26:27,499 | INFO     | chi2: 3.5922084470749693
[2026-01-27 07:27:41] 2026-01-27 12:26:27,500 | INFO     | sum of square deviations: 104545976872.36214
[2026-01-27 07:27:41] 2026-01-27 12:26:27,572 | INFO     | sum of deviations: 226203378962.07788
[2026-01-27 07:27:41] 2026-01-27 12:26:27,572 | INFO     | mean x: 1769495209.6293104
[2026-01-27 07:27:41] 2026-01-27 12:26:27,573 | INFO     | mean y: 2546781.849137931
[2026-01-27 07:27:41] 2026-01-27 12:26:27,573 | INFO     | intersect: -3826063437.7869167
[2026-01-27 07:27:41] 2026-01-27 12:26:27,573 | INFO     | chi2: 2.1927226822525223
[2026-01-27 07:27:41] 2026-01-27 12:26:27,574 | INFO     | current chi2=2.1927226822525223 (change=38.9589241671654 %)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,574 | INFO     | sum of square deviations: 102309013542.27798
[2026-01-27 07:27:41] 2026-01-27 12:26:27,664 | INFO     | monitor loop #2125: job 0:6983773438 is in state 'finished'
[2026-01-27 07:27:41] 2026-01-27 12:26:27,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,664 | INFO     | sum of deviations: 223490714717.42407
[2026-01-27 07:27:41] 2026-01-27 12:26:27,664 | INFO     | mean x: 1769495057.130246
[2026-01-27 07:27:41] 2026-01-27 12:26:27,664 | INFO     | mean y: 2546596.9175108536
[2026-01-27 07:27:41] 2026-01-27 12:26:27,665 | INFO     | intersect: -3862857841.212139
[2026-01-27 07:27:41] 2026-01-27 12:26:27,666 | INFO     | chi2: 2.192884902546234
[2026-01-27 07:27:41] 2026-01-27 12:26:27,666 | INFO     | current chi2=2.192884902546234 (change=-0.007398121751769721 %)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,666 | INFO     | right removable region: 690
[2026-01-27 07:27:41] 2026-01-27 12:26:27,667 | INFO     | sum of square deviations: 104545921972.36215
[2026-01-27 07:27:41] 2026-01-27 12:26:27,812 | INFO     | sum of deviations: -14406608523.568924
[2026-01-27 07:27:41] 2026-01-27 12:26:27,812 | INFO     | mean x: 1769495514.6293104
[2026-01-27 07:27:41] 2026-01-27 12:26:27,812 | INFO     | mean y: 2551124.2729885057
[2026-01-27 07:27:41] 2026-01-27 12:26:27,812 | INFO     | intersect: 246390660.83774135
[2026-01-27 07:27:41] 2026-01-27 12:26:27,813 | INFO     | chi2: 1.5817619250477764
[2026-01-27 07:27:41] 2026-01-27 12:26:27,813 | INFO     | current chi2=1.5817619250477764 (change=55.966866946828794 %)
[2026-01-27 07:27:41] 2026-01-27 12:26:27,963 | INFO     | sum of square deviations: 102308903742.27806
[2026-01-27 07:27:41] 2026-01-27 12:26:28,029 | INFO     | sum of deviations: -47643078793.43993
[2026-01-27 07:27:41] 2026-01-27 12:26:28,030 | INFO     | mean x: 1769495667.130246
[2026-01-27 07:27:41] 2026-01-27 12:26:28,030 | INFO     | mean y: 2553388.2937771347
[2026-01-27 07:27:41] 2026-01-27 12:26:28,030 | INFO     | intersect: 826569856.1674237
[2026-01-27 07:27:41] 2026-01-27 12:26:28,031 | INFO     | chi2: 1.5029882346286518
[2026-01-27 07:27:41] 2026-01-27 12:26:28,059 | INFO     | current chi2=1.5029882346286518 (change=4.980123062245616 %)
[2026-01-27 07:27:41] 2026-01-27 12:26:28,059 | INFO     | left removable region: 20
[2026-01-27 07:27:41] 2026-01-27 12:26:28,060 | INFO     | sum of square deviations: 93261850787.67786
[2026-01-27 07:27:41] 2026-01-27 12:26:28,128 | INFO     | sum of deviations: 14570742128.128363
[2026-01-27 07:27:41] 2026-01-27 12:26:28,128 | INFO     | mean x: 1769495636.6328359
[2026-01-27 07:27:41] 2026-01-27 12:26:28,128 | INFO     | mean y: 2561072.785074627
[2026-01-27 07:27:41] 2026-01-27 12:26:28,128 | INFO     | intersect: -273895639.15519404
[2026-01-27 07:27:41] 2026-01-27 12:26:28,129 | INFO     | chi2: 0.03362773710199934
[2026-01-27 07:27:41] 2026-01-27 12:26:28,129 | INFO     | current memory leak: 0.16 B/s (using 670 data points, chi2=0.03)
[2026-01-27 07:27:41] 2026-01-27 12:26:28,137 | INFO     | could have reported an average CPU frequency of 2986 MHz (27 samples)
[2026-01-27 07:27:41] 2026-01-27 12:26:28,137 | INFO     | ..............................
[2026-01-27 07:27:41] 2026-01-27 12:26:28,137 | INFO     | . Timing measurements:
[2026-01-27 07:27:41] 2026-01-27 12:26:28,137 | INFO     | . get job = 0 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,137 | INFO     | . initial setup = 3 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | . payload setup = 37 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | . stage-in = 0 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | . payload execution = 42785 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | . stage-out = 9 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | . log creation = 2 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,138 | INFO     | ..............................
[2026-01-27 07:27:41] 2026-01-27 12:26:28,232 | INFO     | time since job start (42854s) is within the limit (349056.0s)
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | 
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | job summary report
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | --------------------------------------------------
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | PanDA job id: 6983773438
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | task id: 48317872
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | errors: (none)
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | pilot state: finished 
[2026-01-27 07:27:41] 2026-01-27 12:26:28,827 | INFO     | transexitcode: 0
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | exeerrorcode: 0
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | exeerrordiag: 
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | exitcode: 0
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | exitmsg: OK
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | cpuconsumptiontime: 46627 s
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | nevents: 400
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | neventsw: 0
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | pid: 1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | pgrp: 1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | corecount: 9
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | event service: False
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | sizes: {0: 2283796, 1: 2283824, 2: 2284285, 13: 2284285, 42827: 2327404, 42828: 2327403, 42839: 2336641, 42841: 2336779}
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | --------------------------------------------------
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | 
[2026-01-27 07:27:41] 2026-01-27 12:26:28,828 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-27 07:27:41] 2026-01-27 12:26:29,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:27:41] 2026-01-27 12:26:29,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,053 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:27:41] 2026-01-27 12:26:29,053 | INFO     | job 6983773438 has completed (purged errors)
[2026-01-27 07:27:41] 2026-01-27 12:26:29,053 | INFO     | overall cleanup function is called
[2026-01-27 07:27:41] 2026-01-27 12:26:30,080 | INFO     | --- collectZombieJob: --- 10, [1717448]
[2026-01-27 07:27:41] 2026-01-27 12:26:30,080 | INFO     | zombie collector waiting for pid 1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:30,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:27:41] 2026-01-27 12:26:30,080 | INFO     | collected zombie processes
[2026-01-27 07:27:41] 2026-01-27 12:26:30,080 | INFO     | will attempt to kill all subprocesses of pid=1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:34,868 | INFO     | process IDs to be killed: [1717448] (in reverse order)
[2026-01-27 07:27:41] 2026-01-27 12:26:35,700 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:27:41] 2026-01-27 12:26:35,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:27:41] 2026-01-27 12:26:35,938 | INFO     | did not find any defunct processes belonging to 1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:36,013 | INFO     | did not find any defunct processes belonging to 1717448
[2026-01-27 07:27:41] 2026-01-27 12:26:36,022 | INFO     | ready for new job
[2026-01-27 07:27:41] 2026-01-27 12:26:36,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:27:41] 2026-01-27 12:26:36,025 | INFO     | **************************************
[2026-01-27 07:27:41] 2026-01-27 12:26:36,025 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:27:41] 2026-01-27 12:26:36,026 | INFO     | **************************************
[2026-01-27 07:27:41] 2026-01-27 12:26:36,035 | INFO     | 
[2026-01-27 07:27:41] 2026-01-27 12:26:36,047 | INFO     | architecture information:
[2026-01-27 07:27:41] 2026-01-27 12:26:36,052 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:27:41] 2026-01-27 12:26:36,153 | INFO     | cat /etc/os-release:
[2026-01-27 07:27:41] NAME="CentOS Linux"
[2026-01-27 07:27:41] VERSION="7 (Core)"
[2026-01-27 07:27:41] ID="centos"
[2026-01-27 07:27:41] ID_LIKE="rhel fedora"
[2026-01-27 07:27:41] VERSION_ID="7"
[2026-01-27 07:27:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:27:41] ANSI_COLOR="0;31"
[2026-01-27 07:27:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:27:41] HOME_URL="https://www.centos.org/"
[2026-01-27 07:27:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:27:41] 
[2026-01-27 07:27:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:27:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:27:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:27:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:27:41] 
[2026-01-27 07:27:41] 2026-01-27 12:26:36,153 | INFO     | **************************************
[2026-01-27 07:27:41] 2026-01-27 12:26:36,657 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-27 07:27:41] 2026-01-27 12:26:36,804 | INFO     | sufficient remaining disk space (69330796544 B)
[2026-01-27 07:27:41] 2026-01-27 12:26:36,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:27:41] 2026-01-27 12:26:36,805 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:27:41] 2026-01-27 12:26:36,805 | INFO     | update_server=False
[2026-01-27 07:27:41] 2026-01-27 12:26:36,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:27:41] 2026-01-27 12:26:36,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:27:41] 2026-01-27 12:26:36,806 | INFO     | aborting loop
[2026-01-27 07:27:41] 2026-01-27 12:26:37,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:27:41] 2026-01-27 12:26:37,516 | INFO     | all job control threads have been joined
[2026-01-27 07:27:41] 2026-01-27 12:26:37,811 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:37,812 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:37,819 | INFO     | all data control threads have been joined
[2026-01-27 07:27:41] 2026-01-27 12:26:37,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:27:41] 2026-01-27 12:26:37,896 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:27:41] 2026-01-27 12:26:37,999 | INFO     | all payload control threads have been joined
[2026-01-27 07:27:41] 2026-01-27 12:26:38,042 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,103 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,108 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,493 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,493 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,522 | INFO     | [job] control thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,824 | INFO     | [data] control thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,903 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:38,942 | INFO     | [job] validate thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:39,018 | INFO     | [payload] control thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:39,022 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:39,087 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:39,372 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:26:41,921 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:27:41] 2026-01-27 12:27:08,215 | INFO     | PID=1703561 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:27:41] 2026-01-27 12:27:08,215 | INFO     | .. there are 66 such processes running
[2026-01-27 07:27:41] 2026-01-27 12:27:08,237 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:27:41] 2026-01-27 12:27:08,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:27:41] 2026-01-27 12:27:08,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:27:41] 2026-01-27 12:27:32,474 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:27:41] 2026-01-27 12:27:32,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687612995392)>', '<ExcThread(monitor, started 140686821160704)>']
[2026-01-27 07:27:41] 2026-01-27 12:27:33,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:27:41] 2026-01-27 12:27:33,445 | INFO     | [monitor] control thread has ended
[2026-01-27 07:27:41] 2026-01-27 12:27:37,521 | INFO     | all workflow threads have been joined
[2026-01-27 07:27:41] 2026-01-27 12:27:37,521 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:27:41] 2026-01-27 12:27:37,521 | INFO     | traces error code: 0
[2026-01-27 07:27:41] 2026-01-27 12:27:37,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:27:41] 2026-01-27 12:27:39,072 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:27:41] 2026-01-27 12:27:39,092 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:27:41] 2026-01-27 12:27:39,119 [wrapper] pilotpid: 1703561
[2026-01-27 07:27:41] 2026-01-27 12:27:39,139 [wrapper] Pilot exit status: 0
[2026-01-27 07:27:41] 2026-01-27 12:27:39,295 [wrapper] pandaids: 6983773438 6983773438
[2026-01-27 07:27:41] 2026-01-27 12:27:40,041 [wrapper] cleanup supervisor_pilot 1887205 1703562
[2026-01-27 07:27:41] 2026-01-27 12:27:40,080 [wrapper] Test setup, not cleaning
[2026-01-27 07:27:41] 2026-01-27 12:27:40,109 [wrapper] apfmon messages muted
[2026-01-27 07:27:41] 2026-01-27 12:27:40,130 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:27:41] 2026-01-27 12:27:40,209 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:27:41]  *** Error codes and diagnostics ***
[2026-01-27 07:27:41]     "exeErrorCode": 0,
[2026-01-27 07:27:41]     "exeErrorDiag": "",
[2026-01-27 07:27:41]     "pilotErrorCode": 0,
[2026-01-27 07:27:41]     "pilotErrorDiag": "",
[2026-01-27 07:27:41]  *** Listing of results directory ***
[2026-01-27 07:27:41] total 1180116
[2026-01-27 07:27:41] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-27 07:27:41] -rwx------. 1 boincer umatlas     36322 Jan 26 00:17 runpilot2-wrapper.sh
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas      5111 Jan 26 00:21 queuedata.json
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas       100 Jan 26 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:27:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 15:39 run_atlas
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas       105 Jan 26 15:39 job.xml
[2026-01-27 07:27:41] -rw-r--r--. 3 boincer umatlas 505316350 Jan 26 15:39 EVNT.48317869._000046.pool.root.1
[2026-01-27 07:27:41] -rw-r--r--. 3 boincer umatlas 505316350 Jan 26 15:39 ATLAS.root_0
[2026-01-27 07:27:41] -rw-r--r--. 2 boincer umatlas    597753 Jan 26 15:39 input.tar.gz
[2026-01-27 07:27:41] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 15:39 start_atlas.sh
[2026-01-27 07:27:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 15:39 shared
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas         0 Jan 26 15:39 boinc_lockfile
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas      2513 Jan 26 19:31 pandaJob.out
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas        57 Jan 26 19:31 setup.sh.local
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas   1006441 Jan 26 19:32 agis_schedconf.cvmfs.json
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas       439 Jan 26 19:32 workernode_map.json
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas      6841 Jan 27 07:22 init_data.xml
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas 182847841 Jan 27 07:23 HITS.48317872._002214.pool.root.1
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas       532 Jan 27 07:23 boinc_task_state.xml
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas      1044 Jan 27 07:26 memory_monitor_summary.json
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas   1516246 Jan 27 07:26 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas    770604 Jan 27 07:26 log.48317872._002214.job.log.tgz.1
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas      6382 Jan 27 07:26 heartbeat.json
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas        96 Jan 27 07:27 pilot_heartbeat.json
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 27 07:27 boinc_mmap_file
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas      4820 Jan 27 07:27 pilotlog.txt
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas        28 Jan 27 07:27 wrapper_checkpoint.txt
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas   4727567 Jan 27 07:27 log.48317872._002214.job.log.1
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas       357 Jan 27 07:27 output.list
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas       620 Jan 27 07:27 runtime_log
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas   5519360 Jan 27 07:27 result.tar.gz
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas      9417 Jan 27 07:27 runtime_log.err
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas       781 Jan 27 07:27 0nUMDmu9T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzD9KDm11Adqm.diag
[2026-01-27 07:27:41] -rw-r--r--. 1 boincer umatlas     23481 Jan 27 07:27 stderr.txt
[2026-01-27 07:27:41] HITS file was successfully produced:
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas 182847841 Jan 27 07:23 shared/HITS.pool.root.1
[2026-01-27 07:27:41]  *** Contents of shared directory: ***
[2026-01-27 07:27:41] total 678040
[2026-01-27 07:27:41] -rw-r--r--. 3 boincer umatlas 505316350 Jan 26 15:39 ATLAS.root_0
[2026-01-27 07:27:41] -rw-r--r--. 2 boincer umatlas    597753 Jan 26 15:39 input.tar.gz
[2026-01-27 07:27:41] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 15:39 start_atlas.sh
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas 182847841 Jan 27 07:23 HITS.pool.root.1
[2026-01-27 07:27:41] -rw-------. 1 boincer umatlas   5519360 Jan 27 07:27 result.tar.gz
07:27:43 (1691550): run_atlas exited; CPU time 49001.557140
07:27:43 (1691550): called boinc_finish(0)

</stderr_txt>
]]>

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