Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:36:24 (4091): wrapper (7.7.26015): starting
10:36:24 (4091): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 10:36:24] Arguments: --nthreads 12
[2026-01-26 10:36:24] Threads: 12
[2026-01-26 10:36:24] Checking for CVMFS
[2026-01-26 10:36:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 10:36:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 10:36:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 10:36:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 10:36:24] 2.11.2.0 10903 94174 98064 155551 2 52 13120826 20275201 1 130560 0 34049151 99.843 7369187 33587 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 10:36:24] CVMFS is ok
[2026-01-26 10:36:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 10:36:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 10:36:24] Further information can be found at the LHC@home message board.
[2026-01-26 10:36:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 10:36:24] Checking for apptainer binary...
[2026-01-26 10:36:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 10:36:24] Running /usr/bin/apptainer --version
[2026-01-26 10:36:24] apptainer version 1.3.2-1.el7
[2026-01-26 10:36:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 10:36:25] c-205-22.aglt2.org
[2026-01-26 10:36:25] apptainer works
[2026-01-26 10:36:25] Set ATHENA_PROC_NUMBER=12
[2026-01-26 10:36:25] Set ATHENA_CORE_NUMBER=12
[2026-01-26 10:36:26] Starting ATLAS job with PandaID=6984043321
[2026-01-26 10:36:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 11:55:59]  *** The last 200 lines of the pilot log: ***
[2026-01-26 11:55:59]  filetype=log
[2026-01-26 11:55:59]  guid=48b83613-51be-4ba0-abd2-88a88e60fd97
[2026-01-26 11:55:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 11:55:59]  is_altstaged=None
[2026-01-26 11:55:59]  is_tar=False
[2026-01-26 11:55:59]  lfn=log.48317911._000670.job.log.tgz.1
[2026-01-26 11:55:59]  mtime=0
[2026-01-26 11:55:59]  protocol_id=None
[2026-01-26 11:55:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 11:55:59]  replicas=None
[2026-01-26 11:55:59]  scope=mc23_13p6TeV
[2026-01-26 11:55:59]  status=None
[2026-01-26 11:55:59]  status_code=0
[2026-01-26 11:55:59]  storage_token=
[2026-01-26 11:55:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6984043321/log.48317911._000670.job.log.tgz.1
[2026-01-26 11:55:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/31/log.48317911._000670.job.log.tgz.1
[2026-01-26 11:55:59]  workdir=None
[2026-01-26 11:55:59] ]
[2026-01-26 11:55:59] 2026-01-26 16:55:22,986 | INFO     | transferring file log.48317911._000670.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6984043321/log.48317911._000670.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 11:55:59] 2026-01-26 16:55:22,986 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6984043321/log.48317911._000670.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317911._000670.job
[2026-01-26 11:55:59] 2026-01-26 16:55:23,007 | INFO     | adding to output.list: log.48317911._000670.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/31/log.48317911._000670.job.log.tg
[2026-01-26 11:55:59] 2026-01-26 16:55:23,008 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 11:55:59] 2026-01-26 16:55:23,008 | INFO     | summary of transferred files:
[2026-01-26 11:55:59] 2026-01-26 16:55:23,008 | INFO     |  -- lfn=log.48317911._000670.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 11:55:59] 2026-01-26 16:55:23,009 | INFO     | stage-out finished correctly
[2026-01-26 11:55:59] 2026-01-26 16:55:23,025 | INFO     | monitor loop #359: job 0:6984043321 is in state 'finished'
[2026-01-26 11:55:59] 2026-01-26 16:55:23,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 11:55:59] 2026-01-26 16:55:24,446 | INFO     | time since job start (4719s) is within the limit (349056.0s)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,534 | INFO     | monitor loop #360: job 0:6984043321 is in state 'finished'
[2026-01-26 11:55:59] 2026-01-26 16:55:25,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,591 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 11:55:59] 2026-01-26 16:55:25,670 | INFO     | job 6984043321 has state=finished
[2026-01-26 11:55:59] 2026-01-26 16:55:25,670 | INFO     | preparing for final server update for job 6984043321 in state='finished'
[2026-01-26 11:55:59] 2026-01-26 16:55:25,670 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984043321/jobReport.json
[2026-01-26 11:55:59] 2026-01-26 16:55:25,673 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 11:55:59] 2026-01-26 16:55:25,674 | INFO     | this job has now completed (state=finished)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,674 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,674 | INFO     | log transfer has been attempted: DONE
[2026-01-26 11:55:59] 2026-01-26 16:55:25,674 | INFO     | job 6984043321 has finished - writing final server update
[2026-01-26 11:55:59] 2026-01-26 16:55:25,675 | INFO     | total number of processed events: 400 (read)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,677 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984043321/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,677 | INFO     | extracted standard info from prmon json
[2026-01-26 11:55:59] 2026-01-26 16:55:25,677 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 11:55:59] 2026-01-26 16:55:25,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 11:55:59] 2026-01-26 16:55:25,678 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 11:55:59] 2026-01-26 16:55:25,678 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 11:55:59] 2026-01-26 16:55:25,679 | INFO     | fitting pss+swap vs Time
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | sum of square deviations: 106336877.5
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | sum of deviations: -9753190814.0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | mean x: 1769444239.5
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | mean y: 2820009.1142857145
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | intersect: 162295786553.82608
[2026-01-26 11:55:59] 2026-01-26 16:55:25,680 | INFO     | chi2: 0.05557259457330732
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | current memory leak: -91.72 B/s (using 70 data points, chi2=0.06)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | ..............................
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | . Timing measurements:
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | . get job = 0 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,681 | INFO     | . initial setup = 7 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | . payload setup = 7 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | . stage-in = 0 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | . payload execution = 4693 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | . stage-out = 0 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | . log creation = 0 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,682 | INFO     | ..............................
[2026-01-26 11:55:59] 2026-01-26 16:55:25,759 | INFO     | 
[2026-01-26 11:55:59] 2026-01-26 16:55:25,759 | INFO     | job summary report
[2026-01-26 11:55:59] 2026-01-26 16:55:25,759 | INFO     | --------------------------------------------------
[2026-01-26 11:55:59] 2026-01-26 16:55:25,759 | INFO     | PanDA job id: 6984043321
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | task id: 48317911
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | errors: (none)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | pilot state: finished 
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | transexitcode: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,760 | INFO     | exeerrorcode: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | exeerrordiag: 
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | exitcode: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | exitmsg: OK
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | cpuconsumptiontime: 51802 s
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | nevents: 400
[2026-01-26 11:55:59] 2026-01-26 16:55:25,761 | INFO     | neventsw: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | pid: 12206
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | pgrp: 12206
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | corecount: 12
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | event service: False
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | sizes: {0: 2283765, 1: 2284226, 11: 2284226, 4704: 2310351, 4706: 2319349, 4709: 2319727}
[2026-01-26 11:55:59] 2026-01-26 16:55:25,762 | INFO     | --------------------------------------------------
[2026-01-26 11:55:59] 2026-01-26 16:55:25,763 | INFO     | 
[2026-01-26 11:55:59] 2026-01-26 16:55:25,763 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 11:55:59] 2026-01-26 16:55:25,787 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,787 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,787 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,787 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,790 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,790 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 11:55:59] 2026-01-26 16:55:25,790 | INFO     | job 6984043321 has completed (purged errors)
[2026-01-26 11:55:59] 2026-01-26 16:55:25,790 | INFO     | overall cleanup function is called
[2026-01-26 11:55:59] 2026-01-26 16:55:26,798 | INFO     | --- collectZombieJob: --- 10, [12206]
[2026-01-26 11:55:59] 2026-01-26 16:55:26,799 | INFO     | zombie collector waiting for pid 12206
[2026-01-26 11:55:59] 2026-01-26 16:55:26,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 11:55:59] 2026-01-26 16:55:26,799 | INFO     | collected zombie processes
[2026-01-26 11:55:59] 2026-01-26 16:55:26,799 | INFO     | will attempt to kill all subprocesses of pid=12206
[2026-01-26 11:55:59] 2026-01-26 16:55:26,888 | INFO     | process IDs to be killed: [12206] (in reverse order)
[2026-01-26 11:55:59] 2026-01-26 16:55:26,938 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 11:55:59] 2026-01-26 16:55:26,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 11:55:59] 2026-01-26 16:55:26,942 | INFO     | did not find any defunct processes belonging to 12206
[2026-01-26 11:55:59] 2026-01-26 16:55:26,945 | INFO     | did not find any defunct processes belonging to 12206
[2026-01-26 11:55:59] 2026-01-26 16:55:26,945 | INFO     | ready for new job
[2026-01-26 11:55:59] 2026-01-26 16:55:26,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 11:55:59] 2026-01-26 16:55:26,947 | INFO     | **************************************
[2026-01-26 11:55:59] 2026-01-26 16:55:26,947 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 11:55:59] 2026-01-26 16:55:26,947 | INFO     | **************************************
[2026-01-26 11:55:59] 2026-01-26 16:55:26,947 | INFO     | 
[2026-01-26 11:55:59] 2026-01-26 16:55:26,948 | INFO     | architecture information:
[2026-01-26 11:55:59] 2026-01-26 16:55:26,948 | INFO     | executing command: cat /etc/os-release
[2026-01-26 11:55:59] 2026-01-26 16:55:26,963 | INFO     | cat /etc/os-release:
[2026-01-26 11:55:59] NAME="CentOS Linux"
[2026-01-26 11:55:59] VERSION="7 (Core)"
[2026-01-26 11:55:59] ID="centos"
[2026-01-26 11:55:59] ID_LIKE="rhel fedora"
[2026-01-26 11:55:59] VERSION_ID="7"
[2026-01-26 11:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 11:55:59] ANSI_COLOR="0;31"
[2026-01-26 11:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 11:55:59] HOME_URL="https://www.centos.org/"
[2026-01-26 11:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 11:55:59] 
[2026-01-26 11:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 11:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 11:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 11:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 11:55:59] 
[2026-01-26 11:55:59] 2026-01-26 16:55:26,963 | INFO     | **************************************
[2026-01-26 11:55:59] 2026-01-26 16:55:27,466 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 11:55:59] 2026-01-26 16:55:27,482 | INFO     | sufficient remaining disk space (28693233664 B)
[2026-01-26 11:55:59] 2026-01-26 16:55:27,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 11:55:59] 2026-01-26 16:55:27,483 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 11:55:59] 2026-01-26 16:55:27,483 | INFO     | update_server=False
[2026-01-26 11:55:59] 2026-01-26 16:55:27,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 11:55:59] 2026-01-26 16:55:27,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 11:55:59] 2026-01-26 16:55:27,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 11:55:59] 2026-01-26 16:55:27,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 11:55:59] 2026-01-26 16:55:27,484 | INFO     | aborting loop
[2026-01-26 11:55:59] 2026-01-26 16:55:27,554 | INFO     | job.realtimelogging is not enabled
[2026-01-26 11:55:59] 2026-01-26 16:55:27,911 | INFO     | all data control threads have been joined
[2026-01-26 11:55:59] 2026-01-26 16:55:28,260 | INFO     | all job control threads have been joined
[2026-01-26 11:55:59] 2026-01-26 16:55:28,485 | INFO     | [job] retrieve thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,487 | INFO     | [job] queue monitor thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,489 | INFO     | [job] job monitor thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,559 | INFO     | [payload] validate_post thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,559 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 11:55:59] 2026-01-26 16:55:28,772 | INFO     | all payload control threads have been joined
[2026-01-26 11:55:59] 2026-01-26 16:55:28,916 | INFO     | [data] control thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:28,975 | INFO     | [payload] failed_post thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,150 | INFO     | [job] validate thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,227 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,265 | INFO     | [job] control thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,388 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,477 | INFO     | [data] copytool_in thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,591 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:29,775 | INFO     | [payload] control thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:30,611 | INFO     | [data] copytool_out thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:31,490 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 11:55:59] 2026-01-26 16:55:52,972 | INFO     | [monitor] cgroup control has ended
[2026-01-26 11:55:59] 2026-01-26 16:55:53,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139953864087360)>', '<ExcThread(monitor, started 139953430316800)>']
[2026-01-26 11:55:59] 2026-01-26 16:55:57,640 | INFO     | PID=7764 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-26 11:55:59] 2026-01-26 16:55:57,640 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 11:55:59] 2026-01-26 16:55:57,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 11:55:59] 2026-01-26 16:55:57,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 11:55:59] 2026-01-26 16:55:57,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 11:55:59] 2026-01-26 16:55:57,641 | INFO     | [monitor] control thread has ended
[2026-01-26 11:55:59] 2026-01-26 16:55:58,983 | INFO     | all workflow threads have been joined
[2026-01-26 11:55:59] 2026-01-26 16:55:58,983 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 11:55:59] 2026-01-26 16:55:58,983 | INFO     | traces error code: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:58,983 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 11:55:59] 2026-01-26 16:55:59,077 [wrapper] ==== pilot stdout END ====
[2026-01-26 11:55:59] 2026-01-26 16:55:59,081 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 11:55:59] 2026-01-26 16:55:59,085 [wrapper] pilotpid: 7764
[2026-01-26 11:55:59] 2026-01-26 16:55:59,089 [wrapper] Pilot exit status: 0
[2026-01-26 11:55:59] 2026-01-26 16:55:59,103 [wrapper] pandaids: 6984043321
[2026-01-26 11:55:59] 2026-01-26 16:55:59,141 [wrapper] cleanup supervisor_pilot  1938 7765
[2026-01-26 11:55:59] 2026-01-26 16:55:59,144 [wrapper] Test setup, not cleaning
[2026-01-26 11:55:59] 2026-01-26 16:55:59,148 [wrapper] apfmon messages muted
[2026-01-26 11:55:59] 2026-01-26 16:55:59,152 [wrapper] ==== wrapper stdout END ====
[2026-01-26 11:55:59] 2026-01-26 16:55:59,156 [wrapper] ==== wrapper stderr END ====
[2026-01-26 11:55:59]  *** Error codes and diagnostics ***
[2026-01-26 11:55:59]     "exeErrorCode": 0,
[2026-01-26 11:55:59]     "exeErrorDiag": "",
[2026-01-26 11:55:59]     "pilotErrorCode": 0,
[2026-01-26 11:55:59]     "pilotErrorDiag": "",
[2026-01-26 11:55:59]  *** Listing of results directory ***
[2026-01-26 11:55:59] total 729404
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-26 11:55:59] -rwx------ 1 boincer umatlas     36322 Jan 26 00:14 runpilot2-wrapper.sh
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 00:15 queuedata.json
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas       100 Jan 26 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 11:55:59] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 10:36 run_atlas
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas       105 Jan 26 10:36 job.xml
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas 544183965 Jan 26 10:36 EVNT.48317909._000023.pool.root.1
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 10:36 start_atlas.sh
[2026-01-26 11:55:59] drwxrwx--x 2 boincer umatlas      4096 Jan 26 10:36 shared
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas    597751 Jan 26 10:36 input.tar.gz
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas         0 Jan 26 10:36 boinc_lockfile
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas      2494 Jan 26 10:36 pandaJob.out
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas        57 Jan 26 10:36 setup.sh.local
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas   1002189 Jan 26 10:36 agis_schedconf.cvmfs.json
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas   1516246 Jan 26 10:36 agis_ddmendpoints.agis.ALL.json
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas       434 Jan 26 10:36 workernode_map.json
[2026-01-26 11:55:59] drwx------ 5 boincer umatlas      4096 Jan 26 10:36 pilot3
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas 196665420 Jan 26 11:54 HITS.48317911._000670.pool.root.1
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 11:54 init_data.xml
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas       530 Jan 26 11:54 boinc_task_state.xml
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas      1057 Jan 26 11:55 memory_monitor_summary.json
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas    371736 Jan 26 11:55 log.48317911._000670.job.log.tgz.1
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas      6402 Jan 26 11:55 heartbeat.json
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 11:55 boinc_mmap_file
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas        27 Jan 26 11:55 wrapper_checkpoint.txt
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas        95 Jan 26 11:55 pilot_heartbeat.json
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas      4813 Jan 26 11:55 pilotlog.txt
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas    684673 Jan 26 11:55 log.48317911._000670.job.log.1
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas       357 Jan 26 11:55 output.list
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas       620 Jan 26 11:55 runtime_log
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas   1075200 Jan 26 11:55 result.tar.gz
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas      9343 Jan 26 11:55 runtime_log.err
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas       659 Jan 26 11:55 m6TKDmK7T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfY2KDmG6lI9n.diag
[2026-01-26 11:55:59] -rw-r--r-- 1 boincer umatlas     21272 Jan 26 11:55 stderr.txt
[2026-01-26 11:55:59] HITS file was successfully produced:
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas 196665420 Jan 26 11:54 shared/HITS.pool.root.1
[2026-01-26 11:55:59]  *** Contents of shared directory: ***
[2026-01-26 11:55:59] total 725152
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas 544183965 Jan 26 10:36 ATLAS.root_0
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 10:36 start_atlas.sh
[2026-01-26 11:55:59] -rw-r--r-- 2 boincer umatlas    597751 Jan 26 10:36 input.tar.gz
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas 196665420 Jan 26 11:54 HITS.pool.root.1
[2026-01-26 11:55:59] -rw------- 1 boincer umatlas   1075200 Jan 26 11:55 result.tar.gz
11:56:01 (4091): run_atlas exited; CPU time 51777.930818
11:56:01 (4091): called boinc_finish(0)

</stderr_txt>
]]>

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