Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:43:07 (21111): wrapper (7.7.26015): starting
18:43:07 (21111): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 18:43:07] Arguments: --nthreads 8
[2026-01-26 18:43:07] Threads: 8
[2026-01-26 18:43:07] Checking for CVMFS
[2026-01-26 18:43:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 18:43:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 18:43:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 18:43:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 18:43:08] 2.11.0.0 4155 153647 74080 155555 3 188 3189106 4096001 3668 130560 4 11837369 99.476 13495016 617 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-26 18:43:08] CVMFS is ok
[2026-01-26 18:43:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 18:43:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 18:43:08] Further information can be found at the LHC@home message board.
[2026-01-26 18:43:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 18:43:08] Checking for apptainer binary...
[2026-01-26 18:43:08] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-26 18:43:08] apptainer is not installed, using version from CVMFS
[2026-01-26 18:43:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 18:43:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_11051205/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node294
[2026-01-26 18:43:08] apptainer works
[2026-01-26 18:43:08] Set ATHENA_PROC_NUMBER=8
[2026-01-26 18:43:08] Set ATHENA_CORE_NUMBER=8
[2026-01-26 18:43:08] Starting ATLAS job with PandaID=6984043223
[2026-01-26 18:43:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11051205/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 19:37:25]  *** The last 200 lines of the pilot log: ***
[2026-01-26 19:37:25]  filetype=log
[2026-01-26 19:37:25]  guid=f0dc130d-752d-4805-a46a-5c7815a74835
[2026-01-26 19:37:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 19:37:25]  is_altstaged=None
[2026-01-26 19:37:25]  is_tar=False
[2026-01-26 19:37:25]  lfn=log.48317911._000572.job.log.tgz.1
[2026-01-26 19:37:25]  mtime=0
[2026-01-26 19:37:25]  protocol_id=None
[2026-01-26 19:37:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 19:37:25]  replicas=None
[2026-01-26 19:37:25]  scope=mc23_13p6TeV
[2026-01-26 19:37:25]  status=None
[2026-01-26 19:37:25]  status_code=0
[2026-01-26 19:37:25]  storage_token=
[2026-01-26 19:37:25]  surl=/tmp/job_11051205/atlas/pilot/slots/0/PanDA_Pilot-6984043223/log.48317911._000572.job.log.tgz.1
[2026-01-26 19:37:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/b2/log.48317911._000572.job.log.tgz.1
[2026-01-26 19:37:25]  workdir=None
[2026-01-26 19:37:25] ]
[2026-01-26 19:37:25] 2026-01-26 18:36:50,448 | INFO     | transferring file log.48317911._000572.job.log.tgz.1 from /tmp/job_11051205/atlas/pilot/slots/0/PanDA_Pilot-6984043223/log.48317911._000572.job.log.tgz.1 to /tmp/j
[2026-01-26 19:37:25] 2026-01-26 18:36:50,448 | INFO     | executing command: /usr/bin/env mv /tmp/job_11051205/atlas/pilot/slots/0/PanDA_Pilot-6984043223/log.48317911._000572.job.log.tgz.1 /tmp/job_11051205/atlas/pilot/sl
[2026-01-26 19:37:25] 2026-01-26 18:36:50,456 | INFO     | adding to output.list: log.48317911._000572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/b2/log.48317911._000572.job.log.tg
[2026-01-26 19:37:25] 2026-01-26 18:36:50,456 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 19:37:25] 2026-01-26 18:36:50,456 | INFO     | summary of transferred files:
[2026-01-26 19:37:25] 2026-01-26 18:36:50,456 | INFO     |  -- lfn=log.48317911._000572.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 19:37:25] 2026-01-26 18:36:50,456 | INFO     | stage-out finished correctly
[2026-01-26 19:37:25] 2026-01-26 18:36:50,804 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 19:37:25] 2026-01-26 18:36:51,633 | INFO     | monitor loop #244: job 0:6984043223 is in state 'finished'
[2026-01-26 19:37:25] 2026-01-26 18:36:51,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,032 | INFO     | time since job start (3218s) is within the limit (349056.0s)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,442 | INFO     | job 6984043223 has state=finished
[2026-01-26 19:37:25] 2026-01-26 18:36:52,443 | INFO     | preparing for final server update for job 6984043223 in state='finished'
[2026-01-26 19:37:25] 2026-01-26 18:36:52,443 | INFO     | reading metadata from: /tmp/job_11051205/atlas/pilot/slots/0/PanDA_Pilot-6984043223/jobReport.json
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | added worker_node to metadata from /tmp/job_11051205/atlas/pilot/slots/0/workernode_map.json
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | this job has now completed (state=finished)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | log transfer has been attempted: DONE
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | job 6984043223 has finished - writing final server update
[2026-01-26 19:37:25] 2026-01-26 18:36:52,444 | INFO     | total number of processed events: 400 (read)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,462 | INFO     | using path: /tmp/job_11051205/atlas/pilot/slots/0/PanDA_Pilot-6984043223/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | INFO     | extracted standard info from prmon json
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 19:37:25] 2026-01-26 18:36:52,463 | INFO     | fitting pss+swap vs Time
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | sum of square deviations: 30168007.5
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | sum of deviations: -1820544725.5
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | mean x: 1769451087.5
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | mean y: 2604371.4565217393
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | intersect: 106783433180.86212
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | chi2: 0.011598939507340826
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | current memory leak: -60.35 B/s (using 46 data points, chi2=0.01)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | could have reported an average CPU frequency of 2863 MHz (5 samples)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | ..............................
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . Timing measurements:
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . get job = 0 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . initial setup = 2 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . payload setup = 2 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . stage-in = 0 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . payload execution = 3198 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . stage-out = 0 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | . log creation = 0 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,464 | INFO     | ..............................
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | 
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | job summary report
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | --------------------------------------------------
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | PanDA job id: 6984043223
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | task id: 48317911
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | errors: (none)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,571 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | pilot state: finished 
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | transexitcode: 0
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | exeerrorcode: 0
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | exeerrordiag: 
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | exitcode: 0
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | exitmsg: OK
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | cpuconsumptiontime: 23234 s
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | nevents: 400
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | neventsw: 0
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | pid: 29417
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | pgrp: 29417
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | corecount: 8
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | event service: False
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | sizes: {0: 2284329, 11: 2284329, 3204: 2309904, 3205: 2318988, 3207: 2319158}
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | --------------------------------------------------
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | 
[2026-01-26 19:37:25] 2026-01-26 18:36:52,572 | INFO     | executing command: ls -lF /tmp/job_11051205/atlas/pilot/slots/0
[2026-01-26 19:37:25] 2026-01-26 18:36:52,581 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | job 6984043223 has completed (purged errors)
[2026-01-26 19:37:25] 2026-01-26 18:36:52,582 | INFO     | overall cleanup function is called
[2026-01-26 19:37:25] 2026-01-26 18:36:53,588 | INFO     | --- collectZombieJob: --- 10, [29417]
[2026-01-26 19:37:25] 2026-01-26 18:36:53,588 | INFO     | zombie collector waiting for pid 29417
[2026-01-26 19:37:25] 2026-01-26 18:36:53,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 19:37:25] 2026-01-26 18:36:53,589 | INFO     | collected zombie processes
[2026-01-26 19:37:25] 2026-01-26 18:36:53,589 | INFO     | will attempt to kill all subprocesses of pid=29417
[2026-01-26 19:37:25] 2026-01-26 18:36:53,682 | INFO     | process IDs to be killed: [29417] (in reverse order)
[2026-01-26 19:37:25] 2026-01-26 18:36:53,715 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 19:37:25] 2026-01-26 18:36:53,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 19:37:25] 2026-01-26 18:36:53,718 | INFO     | did not find any defunct processes belonging to 29417
[2026-01-26 19:37:25] 2026-01-26 18:36:53,721 | INFO     | did not find any defunct processes belonging to 29417
[2026-01-26 19:37:25] 2026-01-26 18:36:53,721 | INFO     | ready for new job
[2026-01-26 19:37:25] 2026-01-26 18:36:53,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 19:37:25] 2026-01-26 18:36:53,722 | INFO     | **************************************
[2026-01-26 19:37:25] 2026-01-26 18:36:53,722 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 19:37:25] 2026-01-26 18:36:53,722 | INFO     | **************************************
[2026-01-26 19:37:25] 2026-01-26 18:36:53,722 | INFO     | 
[2026-01-26 19:37:25] 2026-01-26 18:36:53,737 | INFO     | architecture information:
[2026-01-26 19:37:25] 2026-01-26 18:36:53,737 | INFO     | executing command: cat /etc/os-release
[2026-01-26 19:37:25] 2026-01-26 18:36:53,743 | INFO     | cat /etc/os-release:
[2026-01-26 19:37:25] NAME="CentOS Linux"
[2026-01-26 19:37:25] VERSION="7 (Core)"
[2026-01-26 19:37:25] ID="centos"
[2026-01-26 19:37:25] ID_LIKE="rhel fedora"
[2026-01-26 19:37:25] VERSION_ID="7"
[2026-01-26 19:37:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 19:37:25] ANSI_COLOR="0;31"
[2026-01-26 19:37:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 19:37:25] HOME_URL="https://www.centos.org/"
[2026-01-26 19:37:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 19:37:25] 
[2026-01-26 19:37:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 19:37:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 19:37:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 19:37:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 19:37:25] 
[2026-01-26 19:37:25] 2026-01-26 18:36:53,743 | INFO     | **************************************
[2026-01-26 19:37:25] 2026-01-26 18:36:54,246 | INFO     | executing command: df -mP /tmp/job_11051205/atlas/pilot/slots/0
[2026-01-26 19:37:25] 2026-01-26 18:36:54,251 | INFO     | sufficient remaining disk space (222753193984 B)
[2026-01-26 19:37:25] 2026-01-26 18:36:54,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 19:37:25] 2026-01-26 18:36:54,252 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 19:37:25] 2026-01-26 18:36:54,252 | INFO     | update_server=False
[2026-01-26 19:37:25] 2026-01-26 18:36:54,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 19:37:25] 2026-01-26 18:36:54,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 19:37:25] 2026-01-26 18:36:54,252 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:37:25] 2026-01-26 18:36:54,422 | INFO     | all data control threads have been joined
[2026-01-26 19:37:25] 2026-01-26 18:36:54,834 | INFO     | all payload control threads have been joined
[2026-01-26 19:37:25] 2026-01-26 18:36:54,835 | INFO     | job.realtimelogging is not enabled
[2026-01-26 19:37:25] 2026-01-26 18:36:55,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 19:37:25] 2026-01-26 18:36:55,141 | INFO     | aborting loop
[2026-01-26 19:37:25] 2026-01-26 18:36:55,257 | INFO     | [job] retrieve thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,257 | INFO     | [job] queue monitor thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,329 | INFO     | all job control threads have been joined
[2026-01-26 19:37:25] 2026-01-26 18:36:55,427 | INFO     | [data] control thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,504 | INFO     | [data] copytool_in thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,510 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,749 | INFO     | [payload] failed_post thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,840 | INFO     | [payload] control thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,840 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:55,850 | INFO     | [payload] validate_post thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,146 | INFO     | [job] job monitor thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,257 | INFO     | [data] copytool_out thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,334 | INFO     | [job] control thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,612 | INFO     | [job] validate thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,617 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,729 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:36:56,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 19:37:25] 2026-01-26 18:37:00,859 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 19:37:25] 2026-01-26 18:37:19,526 | INFO     | [monitor] cgroup control has ended
[2026-01-26 19:37:25] 2026-01-26 18:37:19,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-01-26 19:37:25] 2026-01-26 18:37:24,919 | INFO     | all workflow threads have been joined
[2026-01-26 19:37:25] 2026-01-26 18:37:24,919 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 19:37:25] 2026-01-26 18:37:24,919 | INFO     | traces error code: 0
[2026-01-26 19:37:25] 2026-01-26 18:37:24,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 19:37:25] 2026-01-26 18:37:25,206 | INFO     | PID=24916 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 19:37:25] 2026-01-26 18:37:25,206 | INFO     | .. there are 2 such processes running
[2026-01-26 19:37:25] 2026-01-26 18:37:25,206 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 19:37:25] 2026-01-26 18:37:25,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 19:37:25] 2026-01-26 18:37:25,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 19:37:25] 2026-01-26 18:37:25,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 19:37:25] 2026-01-26 18:37:25,207 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 19:37:25] 2026-01-26 18:37:25,207 | INFO     | [monitor] control thread has ended
[2026-01-26 19:37:25] 2026-01-26 18:37:25,258 [wrapper] ==== pilot stdout END ====
[2026-01-26 19:37:25] 2026-01-26 18:37:25,260 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 19:37:25] 2026-01-26 18:37:25,261 [wrapper] pilotpid: 24916
[2026-01-26 19:37:25] 2026-01-26 18:37:25,262 [wrapper] Pilot exit status: 0
[2026-01-26 19:37:25] 2026-01-26 18:37:25,266 [wrapper] pandaids: 6984043223
[2026-01-26 19:37:25] 2026-01-26 18:37:25,286 [wrapper] cleanup supervisor_pilot 26246 24917
[2026-01-26 19:37:25] 2026-01-26 18:37:25,287 [wrapper] Test setup, not cleaning
[2026-01-26 19:37:25] 2026-01-26 18:37:25,288 [wrapper] apfmon messages muted
[2026-01-26 19:37:25] 2026-01-26 18:37:25,289 [wrapper] ==== wrapper stdout END ====
[2026-01-26 19:37:25] 2026-01-26 18:37:25,290 [wrapper] ==== wrapper stderr END ====
[2026-01-26 19:37:25]  *** Error codes and diagnostics ***
[2026-01-26 19:37:25]     "exeErrorCode": 0,
[2026-01-26 19:37:25]     "exeErrorDiag": "",
[2026-01-26 19:37:25]     "pilotErrorCode": 0,
[2026-01-26 19:37:25]     "pilotErrorDiag": "",
[2026-01-26 19:37:25]  *** Listing of results directory ***
[2026-01-26 19:37:25] total 724532
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-26 19:37:25] -rwx------ 1 mf493845 unix-user     36322 Jan 26 06:14 runpilot2-wrapper.sh
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      5111 Jan 26 06:15 queuedata.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       100 Jan 26 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 19:37:25] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 26 16:28 run_atlas
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       105 Jan 26 16:28 job.xml
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:43 start_atlas.sh
[2026-01-26 19:37:25] drwxrwx--x 2 mf493845 unix-user       100 Jan 26 18:43 shared
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user    597751 Jan 26 18:43 input.tar.gz
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      6390 Jan 26 18:43 init_data.xml
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user 530276790 Jan 26 18:43 EVNT.48317909._000016.pool.root.1
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user         0 Jan 26 18:43 boinc_setup_complete
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      8192 Jan 26 18:43 boinc_mmap_file
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user         0 Jan 26 18:43 boinc_lockfile
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      2497 Jan 26 18:43 pandaJob.out
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user   1006384 Jan 26 18:43 agis_schedconf.cvmfs.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user   1516246 Jan 26 18:43 agis_ddmendpoints.agis.ALL.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       416 Jan 26 18:43 workernode_map.json
[2026-01-26 19:37:25] drwx------ 5 mf493845 unix-user       440 Jan 26 18:43 pilot3
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user 206134402 Jan 26 19:36 HITS.48317911._000572.pool.root.1
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      1018 Jan 26 19:36 memory_monitor_summary.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user    292901 Jan 26 19:36 log.48317911._000572.job.log.tgz.1
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      6308 Jan 26 19:36 heartbeat.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       890 Jan 26 19:37 pilotlog.txt
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user        95 Jan 26 19:37 pilot_heartbeat.json
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user    505496 Jan 26 19:37 log.48317911._000572.job.log.1
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       357 Jan 26 19:37 output.list
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       620 Jan 26 19:37 runtime_log
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user    819200 Jan 26 19:37 result.tar.gz
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user       641 Jan 26 19:37 s7PMDmJ7T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrX2KDmlTmlLm.diag
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user      9219 Jan 26 19:37 runtime_log.err
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user     21731 Jan 26 19:37 stderr.txt
[2026-01-26 19:37:25] HITS file was successfully produced:
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user 206134402 Jan 26 19:36 shared/HITS.pool.root.1
[2026-01-26 19:37:25]  *** Contents of shared directory: ***
[2026-01-26 19:37:25] total 720556
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 18:43 start_atlas.sh
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user    597751 Jan 26 18:43 input.tar.gz
[2026-01-26 19:37:25] -rw-r--r-- 2 mf493845 unix-user 530276790 Jan 26 18:43 ATLAS.root_0
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user 206134402 Jan 26 19:36 HITS.pool.root.1
[2026-01-26 19:37:25] -rw------- 1 mf493845 unix-user    819200 Jan 26 19:37 result.tar.gz
19:37:26 (21111): run_atlas exited; CPU time 23278.985447
19:37:26 (21111): called boinc_finish(0)

</stderr_txt>
]]>

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