Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:46:49 (4447): wrapper (7.7.26015): starting
14:46:49 (4447): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 14:46:49] Arguments: --nthreads 8
[2026-01-27 14:46:49] Threads: 8
[2026-01-27 14:46:49] Checking for CVMFS
[2026-01-27 14:46:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 14:46:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 14:46:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 14:46:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 14:46:49] 2.11.2.0 27430 61415 140756 155586 2 357 16369651 25165825 830 130560 0 21196579 99.840 14736009 3740 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 14:46:49] CVMFS is ok
[2026-01-27 14:46:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 14:46:49] Checking for apptainer binary...
[2026-01-27 14:46:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 14:46:49] Running /usr/bin/apptainer --version
[2026-01-27 14:46:49] apptainer version 1.3.2-1.el7
[2026-01-27 14:46:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 14:46:51] cg-vwn400.simple-grid.lan
[2026-01-27 14:46:51] apptainer works
[2026-01-27 14:46:51] Set ATHENA_PROC_NUMBER=8
[2026-01-27 14:46:51] Set ATHENA_CORE_NUMBER=8
[2026-01-27 14:46:51] Starting ATLAS job with PandaID=6984226789
[2026-01-27 14:46:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 18:52:53]  *** The last 200 lines of the pilot log: ***
[2026-01-27 18:52:53] 2026-01-27 17:51:49,757 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6984226789/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,757 | INFO     | extracted standard info from prmon json
[2026-01-27 18:52:53] 2026-01-27 17:51:49,757 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 18:52:53] 2026-01-27 17:51:49,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 18:52:53] 2026-01-27 17:51:49,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 18:52:53] 2026-01-27 17:51:49,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 18:52:53] 2026-01-27 17:51:49,763 | INFO     | fitting pss+swap vs Time
[2026-01-27 18:52:53] 2026-01-27 17:51:49,763 | INFO     | sum of square deviations: 4340323240.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,766 | INFO     | sum of deviations: -21193928572.000008
[2026-01-27 18:52:53] 2026-01-27 17:51:49,766 | INFO     | mean x: 1769528976.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,766 | INFO     | mean y: 2484653.2946058093
[2026-01-27 18:52:53] 2026-01-27 17:51:49,766 | INFO     | intersect: 8643147721.381746
[2026-01-27 18:52:53] 2026-01-27 17:51:49,766 | INFO     | chi2: 3.23039018198355
[2026-01-27 18:52:53] 2026-01-27 17:51:49,767 | INFO     | sum of square deviations: 4075741535.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,772 | INFO     | sum of deviations: 11309634850.000008
[2026-01-27 18:52:53] 2026-01-27 17:51:49,772 | INFO     | mean x: 1769528823.5
[2026-01-27 18:52:53] 2026-01-27 17:51:49,772 | INFO     | mean y: 2503153.745762712
[2026-01-27 18:52:53] 2026-01-27 17:51:49,773 | INFO     | intersect: -4907701450.368103
[2026-01-27 18:52:53] 2026-01-27 17:51:49,773 | INFO     | chi2: 1.6221841766220289
[2026-01-27 18:52:53] 2026-01-27 17:51:49,773 | INFO     | current chi2=1.6221841766220289 (change=49.78364577538549 %)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,774 | INFO     | sum of square deviations: 3822136780.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,776 | INFO     | sum of deviations: 10929419653.999994
[2026-01-27 18:52:53] 2026-01-27 17:51:49,776 | INFO     | mean x: 1769528671.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,776 | INFO     | mean y: 2502925.077922078
[2026-01-27 18:52:53] 2026-01-27 17:51:49,776 | INFO     | intersect: -5057473352.156167
[2026-01-27 18:52:53] 2026-01-27 17:51:49,776 | INFO     | chi2: 1.622614531624991
[2026-01-27 18:52:53] 2026-01-27 17:51:49,777 | INFO     | current chi2=1.622614531624991 (change=-0.02652935524609927 %)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,777 | INFO     | right removable region: 230
[2026-01-27 18:52:53] 2026-01-27 17:51:49,777 | INFO     | sum of square deviations: 4075741535.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,779 | INFO     | sum of deviations: -57190261470.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,779 | INFO     | mean x: 1769529128.5
[2026-01-27 18:52:53] 2026-01-27 17:51:49,780 | INFO     | mean y: 2505198.6694915253
[2026-01-27 18:52:53] 2026-01-27 17:51:49,780 | INFO     | intersect: 24832301854.971992
[2026-01-27 18:52:53] 2026-01-27 17:51:49,780 | INFO     | chi2: 1.8067289595040852
[2026-01-27 18:52:53] 2026-01-27 17:51:49,780 | INFO     | current chi2=1.8067289595040852 (change=44.07087510417385 %)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,781 | INFO     | sum of square deviations: 3822136780.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,783 | INFO     | sum of deviations: -51696466111.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,783 | INFO     | mean x: 1769529281.0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,783 | INFO     | mean y: 2501869.883116883
[2026-01-27 18:52:53] 2026-01-27 17:51:49,783 | INFO     | intersect: 23936341963.28728
[2026-01-27 18:52:53] 2026-01-27 17:51:49,783 | INFO     | chi2: 1.790317458026853
[2026-01-27 18:52:53] 2026-01-27 17:51:49,784 | INFO     | current chi2=1.790317458026853 (change=0.9083543710804748 %)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,784 | INFO     | left removable region: 20
[2026-01-27 18:52:53] 2026-01-27 17:51:49,784 | INFO     | sum of square deviations: 2871616632.5
[2026-01-27 18:52:53] 2026-01-27 17:51:49,786 | INFO     | sum of deviations: -3795224281.5000014
[2026-01-27 18:52:53] 2026-01-27 17:51:49,786 | INFO     | mean x: 1769529250.5
[2026-01-27 18:52:53] 2026-01-27 17:51:49,786 | INFO     | mean y: 2510567.1952380952
[2026-01-27 18:52:53] 2026-01-27 17:51:49,786 | INFO     | intersect: 2341179420.9396276
[2026-01-27 18:52:53] 2026-01-27 17:51:49,787 | INFO     | chi2: 0.06971690451305493
[2026-01-27 18:52:53] 2026-01-27 17:51:49,787 | INFO     | current memory leak: -1.32 B/s (using 210 data points, chi2=0.07)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | ..............................
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . Timing measurements:
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . get job = 0 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . initial setup = 8 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . payload setup = 9 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . stage-in = 0 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,788 | INFO     | . payload execution = 14649 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,789 | INFO     | . stage-out = 4 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,789 | INFO     | . log creation = 1 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,789 | INFO     | ..............................
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | 
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | job summary report
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | --------------------------------------------------
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | PanDA job id: 6984226789
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | task id: 48317931
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | errors: (none)
[2026-01-27 18:52:53] 2026-01-27 17:51:49,938 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | pilot state: finished 
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | transexitcode: 0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | exeerrorcode: 0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | exeerrordiag: 
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | exitcode: 0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | exitmsg: OK
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | cpuconsumptiontime: 57988 s
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | nevents: 400
[2026-01-27 18:52:53] 2026-01-27 17:51:49,939 | INFO     | neventsw: 0
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | pid: 12580
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | pgrp: 12580
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | corecount: 8
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | event service: False
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | sizes: {0: 2283969, 1: 2284203, 14663: 2314995, 14668: 2323995, 14669: 2324051, 14672: 2324245}
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | --------------------------------------------------
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | 
[2026-01-27 18:52:53] 2026-01-27 17:51:49,940 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-01-27 18:52:53] 2026-01-27 17:51:50,012 | INFO     | time since job start (14674s) is within the limit (349056.0s)
[2026-01-27 18:52:53] 2026-01-27 17:51:50,337 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,337 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,337 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,338 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 18:52:53] 2026-01-27 17:51:50,339 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,340 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 18:52:53] 2026-01-27 17:51:50,340 | INFO     | job 6984226789 has completed (purged errors)
[2026-01-27 18:52:53] 2026-01-27 17:51:50,340 | INFO     | overall cleanup function is called
[2026-01-27 18:52:53] 2026-01-27 17:51:51,349 | INFO     | --- collectZombieJob: --- 10, [12580]
[2026-01-27 18:52:53] 2026-01-27 17:51:51,349 | INFO     | zombie collector waiting for pid 12580
[2026-01-27 18:52:53] 2026-01-27 17:51:51,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 18:52:53] 2026-01-27 17:51:51,349 | INFO     | collected zombie processes
[2026-01-27 18:52:53] 2026-01-27 17:51:51,349 | INFO     | will attempt to kill all subprocesses of pid=12580
[2026-01-27 18:52:53] 2026-01-27 17:51:51,434 | INFO     | process IDs to be killed: [12580] (in reverse order)
[2026-01-27 18:52:53] 2026-01-27 17:51:52,522 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 18:52:53] 2026-01-27 17:51:52,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 18:52:53] 2026-01-27 17:51:52,525 | INFO     | did not find any defunct processes belonging to 12580
[2026-01-27 18:52:53] 2026-01-27 17:51:52,526 | INFO     | did not find any defunct processes belonging to 12580
[2026-01-27 18:52:53] 2026-01-27 17:51:52,532 | INFO     | ready for new job
[2026-01-27 18:52:53] 2026-01-27 17:51:52,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 18:52:53] 2026-01-27 17:51:52,534 | INFO     | **************************************
[2026-01-27 18:52:53] 2026-01-27 17:51:52,534 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 18:52:53] 2026-01-27 17:51:52,534 | INFO     | **************************************
[2026-01-27 18:52:53] 2026-01-27 17:51:52,534 | INFO     | 
[2026-01-27 18:52:53] 2026-01-27 17:51:52,535 | INFO     | pilot is running in a VM
[2026-01-27 18:52:53] 2026-01-27 17:51:52,535 | INFO     | architecture information:
[2026-01-27 18:52:53] 2026-01-27 17:51:52,542 | INFO     | executing command: cat /etc/os-release
[2026-01-27 18:52:53] 2026-01-27 17:51:52,891 | INFO     | cat /etc/os-release:
[2026-01-27 18:52:53] NAME="CentOS Linux"
[2026-01-27 18:52:53] VERSION="7 (Core)"
[2026-01-27 18:52:53] ID="centos"
[2026-01-27 18:52:53] ID_LIKE="rhel fedora"
[2026-01-27 18:52:53] VERSION_ID="7"
[2026-01-27 18:52:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 18:52:53] ANSI_COLOR="0;31"
[2026-01-27 18:52:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 18:52:53] HOME_URL="https://www.centos.org/"
[2026-01-27 18:52:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 18:52:53] 
[2026-01-27 18:52:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 18:52:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 18:52:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 18:52:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 18:52:53] 
[2026-01-27 18:52:53] 2026-01-27 17:51:52,891 | INFO     | **************************************
[2026-01-27 18:52:53] 2026-01-27 17:51:53,394 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-01-27 18:52:53] 2026-01-27 17:51:53,618 | INFO     | sufficient remaining disk space (496714645504 B)
[2026-01-27 18:52:53] 2026-01-27 17:51:53,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 18:52:53] 2026-01-27 17:51:53,619 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 18:52:53] 2026-01-27 17:51:53,619 | INFO     | update_server=False
[2026-01-27 18:52:53] 2026-01-27 17:51:53,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 18:52:53] 2026-01-27 17:51:53,620 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 18:52:53] 2026-01-27 17:51:53,701 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 18:52:53] 2026-01-27 17:51:53,701 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 18:52:53] 2026-01-27 17:51:53,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:52:53] 2026-01-27 17:51:53,701 | INFO     | will abort loop
[2026-01-27 18:52:53] 2026-01-27 17:51:53,769 | INFO     | all data control threads have been joined
[2026-01-27 18:52:53] 2026-01-27 17:51:53,856 | INFO     | all payload control threads have been joined
[2026-01-27 18:52:53] 2026-01-27 17:51:53,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 18:52:53] 2026-01-27 17:51:54,322 | INFO     | all job control threads have been joined
[2026-01-27 18:52:53] 2026-01-27 17:51:54,625 | INFO     | [job] retrieve thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,707 | INFO     | [job] job monitor thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,742 | INFO     | [data] copytool_in thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,775 | INFO     | [data] control thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,862 | INFO     | [payload] control thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,940 | INFO     | [payload] validate_post thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:54,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 18:52:53] 2026-01-27 17:51:55,093 | INFO     | [job] validate thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,137 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,328 | INFO     | [job] control thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,423 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,526 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,646 | INFO     | [payload] failed_post thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,871 | INFO     | [data] copytool_out thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:55,958 | INFO     | [job] queue monitor thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:56,061 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:51:57,629 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 18:52:53] 2026-01-27 17:52:23,141 | INFO     | PID=8170 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-27 18:52:53] 2026-01-27 17:52:23,141 | INFO     | .. there are 2 such processes running
[2026-01-27 18:52:53] 2026-01-27 17:52:23,143 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 18:52:53] 2026-01-27 17:52:23,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 18:52:53] 2026-01-27 17:52:23,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 18:52:53] 2026-01-27 17:52:41,374 | INFO     | [monitor] cgroup control has ended
[2026-01-27 18:52:53] 2026-01-27 17:52:43,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284164065088)>', '<ExcThread(monitor, started 140283421386496)>']
[2026-01-27 18:52:53] 2026-01-27 17:52:43,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 18:52:53] 2026-01-27 17:52:43,260 | INFO     | [monitor] control thread has ended
[2026-01-27 18:52:53] 2026-01-27 17:52:48,149 | INFO     | all workflow threads have been joined
[2026-01-27 18:52:53] 2026-01-27 17:52:48,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 18:52:53] 2026-01-27 17:52:48,149 | INFO     | traces error code: 0
[2026-01-27 18:52:53] 2026-01-27 17:52:48,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 18:52:53] 2026-01-27 17:52:48,625 [wrapper] ==== pilot stdout END ====
[2026-01-27 18:52:53] 2026-01-27 17:52:48,729 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 18:52:53] 2026-01-27 17:52:48,826 [wrapper] pilotpid: 8170
[2026-01-27 18:52:53] 2026-01-27 17:52:48,943 [wrapper] Pilot exit status: 0
[2026-01-27 18:52:53] 2026-01-27 17:52:49,438 [wrapper] pandaids: 6984226789
[2026-01-27 18:52:53] 2026-01-27 17:52:50,389 [wrapper] cleanup supervisor_pilot 18422 8171
[2026-01-27 18:52:53] 2026-01-27 17:52:50,492 [wrapper] Test setup, not cleaning
[2026-01-27 18:52:53] 2026-01-27 17:52:50,592 [wrapper] apfmon messages muted
[2026-01-27 18:52:53] 2026-01-27 17:52:50,644 [wrapper] ==== wrapper stdout END ====
[2026-01-27 18:52:53] 2026-01-27 17:52:50,703 [wrapper] ==== wrapper stderr END ====
[2026-01-27 18:52:53]  *** Error codes and diagnostics ***
[2026-01-27 18:52:53]     "exeErrorCode": 0,
[2026-01-27 18:52:53]     "exeErrorDiag": "",
[2026-01-27 18:52:53]     "pilotErrorCode": 0,
[2026-01-27 18:52:53]     "pilotErrorDiag": "",
[2026-01-27 18:52:53]  *** Listing of results directory ***
[2026-01-27 18:52:53] total 674080
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc    584422 Jan 26 10:48 pilot3.tar.gz
[2026-01-27 18:52:53] -rwx------. 1 boinc boinc     36322 Jan 26 10:49 runpilot2-wrapper.sh
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc      5111 Jan 26 10:50 queuedata.json
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc       100 Jan 27 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 18:52:53] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 14:46 run_atlas
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc       105 Jan 27 14:46 job.xml
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc      6392 Jan 27 14:46 init_data.xml
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc 497844694 Jan 27 14:46 EVNT.48317929._000068.pool.root.1
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc     15845 Jan 27 14:46 start_atlas.sh
[2026-01-27 18:52:53] drwxrwx--x. 2 boinc boinc        68 Jan 27 14:46 shared
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc    597752 Jan 27 14:46 input.tar.gz
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc         0 Jan 27 14:46 boinc_lockfile
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc      2507 Jan 27 14:46 pandaJob.out
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc   1004835 Jan 27 14:47 agis_schedconf.cvmfs.json
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc       415 Jan 27 14:47 workernode_map.json
[2026-01-27 18:52:53] drwx------. 5 boinc boinc      4096 Jan 27 14:47 pilot3
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc 183421373 Jan 27 18:50 HITS.48317931._002164.pool.root.1
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc       531 Jan 27 18:50 boinc_task_state.xml
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc      1012 Jan 27 18:51 memory_monitor_summary.json
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc   1516246 Jan 27 18:51 agis_ddmendpoints.agis.ALL.json
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc    471102 Jan 27 18:51 log.48317931._002164.job.log.tgz.1
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc      6309 Jan 27 18:51 heartbeat.json
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc        95 Jan 27 18:52 pilot_heartbeat.json
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc      8192 Jan 27 18:52 boinc_mmap_file
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc      5066 Jan 27 18:52 pilotlog.txt
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc        28 Jan 27 18:52 wrapper_checkpoint.txt
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc   2056949 Jan 27 18:52 log.48317931._002164.job.log.1
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc       357 Jan 27 18:52 output.list
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc       620 Jan 27 18:52 runtime_log
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc   2549760 Jan 27 18:52 result.tar.gz
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc      8832 Jan 27 18:52 runtime_log.err
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc       656 Jan 27 18:52 8O7KDmJPY48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRd9KDmFOevwn.diag
[2026-01-27 18:52:53] -rw-r--r--. 1 boinc boinc     20714 Jan 27 18:52 stderr.txt
[2026-01-27 18:52:53] HITS file was successfully produced:
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc 183421373 Jan 27 18:50 shared/HITS.pool.root.1
[2026-01-27 18:52:53]  *** Contents of shared directory: ***
[2026-01-27 18:52:53] total 668396
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc 497844694 Jan 27 14:46 ATLAS.root_0
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc     15845 Jan 27 14:46 start_atlas.sh
[2026-01-27 18:52:53] -rw-r--r--. 2 boinc boinc    597752 Jan 27 14:46 input.tar.gz
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc 183421373 Jan 27 18:50 HITS.pool.root.1
[2026-01-27 18:52:53] -rw-------. 1 boinc boinc   2549760 Jan 27 18:52 result.tar.gz
18:52:55 (4447): run_atlas exited; CPU time 58131.273275
18:52:55 (4447): called boinc_finish(0)

</stderr_txt>
]]>

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