Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:38:28 (1216769): wrapper (7.7.26015): starting
00:38:28 (1216769): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 00:38:28] Arguments: --nthreads 3
[2026-01-27 00:38:28] Threads: 3
[2026-01-27 00:38:28] Checking for CVMFS
[2026-01-27 00:38:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 00:38:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 00:38:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 00:38:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 00:38:29] 2.9.2.0 4031871 8654 88452 155566 0 50 25098967 36864001 0 130560 0 3984681 99.987 281247 6809 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 00:38:29] CVMFS is ok
[2026-01-27 00:38:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 00:38:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 00:38:29] Further information can be found at the LHC@home message board.
[2026-01-27 00:38:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 00:38:29] Checking for apptainer binary...
[2026-01-27 00:38:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 00:38:29] Running /usr/bin/apptainer --version
[2026-01-27 00:38:29] apptainer version 1.4.1-1.1
[2026-01-27 00:38:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 00:38:29] magicA161a
[2026-01-27 00:38:29] apptainer works
[2026-01-27 00:38:29] Set ATHENA_PROC_NUMBER=3
[2026-01-27 00:38:29] Set ATHENA_CORE_NUMBER=3
[2026-01-27 00:38:29] Starting ATLAS job with PandaID=6984042501
[2026-01-27 00:38:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 01:59:03]  *** The last 200 lines of the pilot log: ***
[2026-01-27 01:59:03] 2026-01-27 00:58:31,990 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 01:59:03] 2026-01-27 00:58:31,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 01:59:03] 2026-01-27 00:58:31,990 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 01:59:03] 2026-01-27 00:58:31,990 | INFO     | job 6984042501 has completed (purged errors)
[2026-01-27 01:59:03] 2026-01-27 00:58:31,990 | INFO     | overall cleanup function is called
[2026-01-27 01:59:03] 2026-01-27 00:58:32,997 | INFO     | --- collectZombieJob: --- 10, [1225235]
[2026-01-27 01:59:03] 2026-01-27 00:58:32,998 | INFO     | zombie collector waiting for pid 1225235
[2026-01-27 01:59:03] 2026-01-27 00:58:32,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 01:59:03] 2026-01-27 00:58:32,998 | INFO     | collected zombie processes
[2026-01-27 01:59:03] 2026-01-27 00:58:32,998 | INFO     | will attempt to kill all subprocesses of pid=1225235
[2026-01-27 01:59:03] 2026-01-27 00:58:33,038 | INFO     | process IDs to be killed: [1225235] (in reverse order)
[2026-01-27 01:59:03] 2026-01-27 00:58:33,061 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 01:59:03] 2026-01-27 00:58:33,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 01:59:03] 2026-01-27 00:58:33,063 | INFO     | did not find any defunct processes belonging to 1225235
[2026-01-27 01:59:03] 2026-01-27 00:58:33,064 | INFO     | did not find any defunct processes belonging to 1225235
[2026-01-27 01:59:03] 2026-01-27 00:58:33,064 | INFO     | ready for new job
[2026-01-27 01:59:03] 2026-01-27 00:58:33,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | **************************************
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | **************************************
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | 
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | architecture information:
[2026-01-27 01:59:03] 2026-01-27 00:58:33,065 | INFO     | executing command: cat /etc/os-release
[2026-01-27 01:59:03] 2026-01-27 00:58:33,074 | INFO     | cat /etc/os-release:
[2026-01-27 01:59:03] NAME="CentOS Linux"
[2026-01-27 01:59:03] VERSION="7 (Core)"
[2026-01-27 01:59:03] ID="centos"
[2026-01-27 01:59:03] ID_LIKE="rhel fedora"
[2026-01-27 01:59:03] VERSION_ID="7"
[2026-01-27 01:59:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 01:59:03] ANSI_COLOR="0;31"
[2026-01-27 01:59:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 01:59:03] HOME_URL="https://www.centos.org/"
[2026-01-27 01:59:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 01:59:03] 
[2026-01-27 01:59:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 01:59:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 01:59:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 01:59:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 01:59:03] 
[2026-01-27 01:59:03] 2026-01-27 00:58:33,074 | INFO     | **************************************
[2026-01-27 01:59:03] 2026-01-27 00:58:33,577 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 01:59:03] 2026-01-27 00:58:33,589 | INFO     | sufficient remaining disk space (377584877568 B)
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | INFO     | update_server=False
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:59:03] 2026-01-27 00:58:33,590 | INFO     | aborting loop
[2026-01-27 01:59:03] 2026-01-27 00:58:34,008 | INFO     | all job control threads have been joined
[2026-01-27 01:59:03] 2026-01-27 00:58:34,304 | INFO     | all data control threads have been joined
[2026-01-27 01:59:03] 2026-01-27 00:58:34,595 | INFO     | [job] retrieve thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:34,595 | INFO     | [job] queue monitor thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:34,596 | INFO     | [job] job monitor thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:34,622 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:34,741 | INFO     | [data] copytool_in thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:34,981 | INFO     | all payload control threads have been joined
[2026-01-27 01:59:03] 2026-01-27 00:58:35,013 | INFO     | [job] control thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,052 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,310 | INFO     | [data] control thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,376 | INFO     | [payload] validate_post thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,596 | INFO     | [data] copytool_out thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,600 | INFO     | [payload] failed_post thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,987 | INFO     | [payload] control thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:35,990 | INFO     | [job] validate thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:36,073 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:37,597 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:44,317 | INFO     | job.realtimelogging is not enabled
[2026-01-27 01:59:03] 2026-01-27 00:58:44,376 | INFO     | [monitor] cgroup control has ended
[2026-01-27 01:59:03] 2026-01-27 00:58:45,322 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 01:59:03] 2026-01-27 00:58:45,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700859877184)>', '<ExcThread(monitor, started 139700211787520)>']
[2026-01-27 01:59:03] 2026-01-27 00:58:50,359 | INFO     | all workflow threads have been joined
[2026-01-27 01:59:03] 2026-01-27 00:58:50,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 01:59:03] 2026-01-27 00:58:50,360 | INFO     | traces error code: 0
[2026-01-27 01:59:03] 2026-01-27 00:58:50,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 01:59:03] 2026-01-27 00:59:03,178 | INFO     | PID=1220817 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 01:59:03] 2026-01-27 00:59:03,179 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 01:59:03] 2026-01-27 00:59:03,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 01:59:03] 2026-01-27 00:59:03,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 01:59:03] 2026-01-27 00:59:03,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 01:59:03] 2026-01-27 00:59:03,179 | INFO     | [monitor] control thread has ended
[2026-01-27 01:59:03] 2026-01-27 00:59:03,224 [wrapper] ==== pilot stdout END ====
[2026-01-27 01:59:03] 2026-01-27 00:59:03,227 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 01:59:03] 2026-01-27 00:59:03,229 [wrapper] pilotpid: 1220817
[2026-01-27 01:59:03] 2026-01-27 00:59:03,231 [wrapper] Pilot exit status: 0
[2026-01-27 01:59:03] 2026-01-27 00:59:03,238 [wrapper] pandaids: 6984042501
[2026-01-27 01:59:03] 2026-01-27 00:59:03,253 [wrapper] cleanup supervisor_pilot 1230296 1220818
[2026-01-27 01:59:03] 2026-01-27 00:59:03,256 [wrapper] Test setup, not cleaning
[2026-01-27 01:59:03] 2026-01-27 00:59:03,258 [wrapper] apfmon messages muted
[2026-01-27 01:59:03] 2026-01-27 00:59:03,260 [wrapper] ==== wrapper stdout END ====
[2026-01-27 01:59:03] 2026-01-27 00:59:03,263 [wrapper] ==== wrapper stderr END ====
[2026-01-27 01:59:03]  *** Error codes and diagnostics ***
[2026-01-27 01:59:03]     "exeErrorCode": 0,
[2026-01-27 01:59:03]     "exeErrorDiag": "",
[2026-01-27 01:59:03]     "pilotErrorCode": 0,
[2026-01-27 01:59:03]     "pilotErrorDiag": "",
[2026-01-27 01:59:03]  *** Listing of results directory ***
[2026-01-27 01:59:03] total 431772
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:14 queuedata.json
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 01:59:03] -rwx------ 1 boinc boinc     36322 Jan 26 06:14 runpilot2-wrapper.sh
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc       100 Jan 27 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 01:59:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 00:38 run_atlas
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc       105 Jan 27 00:38 job.xml
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc 252528317 Jan 27 00:38 EVNT.47929390._000201.pool.root.1
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc    597755 Jan 27 00:38 input.tar.gz
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:38 start_atlas.sh
[2026-01-27 01:59:03] drwxrwx--x 2 boinc boinc      4096 Jan 27 00:38 shared
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:38 boinc_setup_complete
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc      6448 Jan 27 00:38 init_data.xml
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:38 boinc_lockfile
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc      2550 Jan 27 00:38 pandaJob.out
[2026-01-27 01:59:03] -rw------- 1 boinc boinc   1006441 Jan 27 00:38 agis_schedconf.cvmfs.json
[2026-01-27 01:59:03] -rw------- 1 boinc boinc   1516246 Jan 27 00:38 agis_ddmendpoints.agis.ALL.json
[2026-01-27 01:59:03] -rw------- 1 boinc boinc       426 Jan 27 00:38 workernode_map.json
[2026-01-27 01:59:03] drwx------ 5 boinc boinc      4096 Jan 27 00:38 pilot3
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc       529 Jan 27 01:58 boinc_task_state.xml
[2026-01-27 01:59:03] -rw------- 1 boinc boinc 183748215 Jan 27 01:58 HITS.47929392._005202.pool.root.1
[2026-01-27 01:59:03] -rw------- 1 boinc boinc      1014 Jan 27 01:58 memory_monitor_summary.json
[2026-01-27 01:59:03] -rw------- 1 boinc boinc    263854 Jan 27 01:58 log.47929392._005202.job.log.tgz.1
[2026-01-27 01:59:03] -rw------- 1 boinc boinc      6307 Jan 27 01:58 heartbeat.json
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc      8192 Jan 27 01:58 boinc_mmap_file
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc        27 Jan 27 01:58 wrapper_checkpoint.txt
[2026-01-27 01:59:03] -rw------- 1 boinc boinc       747 Jan 27 01:59 pilotlog.txt
[2026-01-27 01:59:03] -rw------- 1 boinc boinc        95 Jan 27 01:59 pilot_heartbeat.json
[2026-01-27 01:59:03] -rw------- 1 boinc boinc    704066 Jan 27 01:59 log.47929392._005202.job.log.1
[2026-01-27 01:59:03] -rw------- 1 boinc boinc       357 Jan 27 01:59 output.list
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc       620 Jan 27 01:59 runtime_log
[2026-01-27 01:59:03] -rw------- 1 boinc boinc    983040 Jan 27 01:59 result.tar.gz
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc      8916 Jan 27 01:59 runtime_log.err
[2026-01-27 01:59:03] -rw------- 1 boinc boinc       661 Jan 27 01:59 WLfNDmy6T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1V2KDmvnEPXo.diag
[2026-01-27 01:59:03] -rw-r--r-- 1 boinc boinc     11205 Jan 27 01:59 stderr.txt
[2026-01-27 01:59:03] HITS file was successfully produced:
[2026-01-27 01:59:03] -rw------- 1 boinc boinc 183748215 Jan 27 01:58 shared/HITS.pool.root.1
[2026-01-27 01:59:03]  *** Contents of shared directory: ***
[2026-01-27 01:59:03] total 427624
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc 252528317 Jan 27 00:38 ATLAS.root_0
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc    597755 Jan 27 00:38 input.tar.gz
[2026-01-27 01:59:03] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:38 start_atlas.sh
[2026-01-27 01:59:03] -rw------- 1 boinc boinc 183748215 Jan 27 01:58 HITS.pool.root.1
[2026-01-27 01:59:03] -rw------- 1 boinc boinc    983040 Jan 27 01:59 result.tar.gz
01:59:04 (1216769): run_atlas exited; CPU time 13688.106804
01:59:04 (1216769): called boinc_finish(0)

</stderr_txt>
]]>

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