Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
09:06:32 (687647): wrapper (7.7.26015): starting
09:06:32 (687647): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 09:06:32] Arguments: --nthreads 12
[2026-01-26 09:06:32] Threads: 12
[2026-01-26 09:06:32] Checking for CVMFS
[2026-01-26 09:06:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 09:06:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 09:06:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 09:06:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 09:06:32] 2.13.2.0 321610 265 52084 155550 3 49 16154154 16777216 0 130560 0 505294 99.993 11471 832 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-01-26 09:06:32] CVMFS is ok
[2026-01-26 09:06:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 09:06:32] Checking for apptainer binary...
[2026-01-26 09:06:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 09:06:32] Running /usr/bin/apptainer --version
[2026-01-26 09:06:32] apptainer version 1.3.0-bp160.1.36
[2026-01-26 09:06:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 09:06:32] boinc-runner
[2026-01-26 09:06:32] apptainer works
[2026-01-26 09:06:32] Set ATHENA_PROC_NUMBER=12
[2026-01-26 09:06:32] Set ATHENA_CORE_NUMBER=12
[2026-01-26 09:06:32] Starting ATLAS job with PandaID=6984042546
[2026-01-26 09:06:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 09:38:51]  *** The last 200 lines of the pilot log: ***
[2026-01-26 09:38:51]  scope=mc23_13p6TeV
[2026-01-26 09:38:51]  status=None
[2026-01-26 09:38:51]  status_code=0
[2026-01-26 09:38:51]  storage_token=
[2026-01-26 09:38:51]  surl=/var/lib/boinc/slots/5/PanDA_Pilot-6984042546/log.47929392._005247.job.log.tgz.1
[2026-01-26 09:38:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/c7/log.47929392._005247.job.log.tgz.1
[2026-01-26 09:38:51]  workdir=None
[2026-01-26 09:38:51] ]
[2026-01-26 09:38:51] 2026-01-26 15:38:17,082 | INFO     | transferring file log.47929392._005247.job.log.tgz.1 from /var/lib/boinc/slots/5/PanDA_Pilot-6984042546/log.47929392._005247.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-26 09:38:51] 2026-01-26 15:38:17,082 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/5/PanDA_Pilot-6984042546/log.47929392._005247.job.log.tgz.1 /var/lib/boinc/slots/5/log.47929392._005247.job
[2026-01-26 09:38:51] 2026-01-26 15:38:17,090 | INFO     | adding to output.list: log.47929392._005247.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/c7/log.47929392._005247.job.log.tg
[2026-01-26 09:38:51] 2026-01-26 15:38:17,091 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 09:38:51] 2026-01-26 15:38:17,091 | INFO     | summary of transferred files:
[2026-01-26 09:38:51] 2026-01-26 15:38:17,091 | INFO     |  -- lfn=log.47929392._005247.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 09:38:51] 2026-01-26 15:38:17,091 | INFO     | stage-out finished correctly
[2026-01-26 09:38:51] 2026-01-26 15:38:17,119 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 09:38:51] 2026-01-26 15:38:17,843 | INFO     | time since job start (1899s) is within the limit (349056.0s)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,303 | INFO     | job 6984042546 has state=finished
[2026-01-26 09:38:51] 2026-01-26 15:38:19,303 | INFO     | preparing for final server update for job 6984042546 in state='finished'
[2026-01-26 09:38:51] 2026-01-26 15:38:19,303 | INFO     | reading metadata from: /var/lib/boinc/slots/5/PanDA_Pilot-6984042546/jobReport.json
[2026-01-26 09:38:51] 2026-01-26 15:38:19,304 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/5/workernode_map.json
[2026-01-26 09:38:51] 2026-01-26 15:38:19,305 | INFO     | this job has now completed (state=finished)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,305 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,305 | INFO     | log transfer has been attempted: DONE
[2026-01-26 09:38:51] 2026-01-26 15:38:19,305 | INFO     | job 6984042546 has finished - writing final server update
[2026-01-26 09:38:51] 2026-01-26 15:38:19,305 | INFO     | total number of processed events: 400 (read)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,306 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6984042546/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | extracted standard info from prmon json
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | fitting pss+swap vs Time
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | sum of square deviations: 4279150.0
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | sum of deviations: -162762548.5
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | mean x: 1769441019.5
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | mean y: 2754355.875
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | intersect: 67305543403.760254
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | chi2: 0.0065483417624538
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | current memory leak: -38.04 B/s (using 24 data points, chi2=0.01)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | could have reported an average CPU frequency of 3666 MHz (5 samples)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | ..............................
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | . Timing measurements:
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | . get job = 0 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | . initial setup = 4 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | . payload setup = 1 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,307 | INFO     | . stage-in = 0 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,308 | INFO     | . payload execution = 1882 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,308 | INFO     | . stage-out = 0 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,308 | INFO     | . log creation = 0 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,308 | INFO     | ..............................
[2026-01-26 09:38:51] 2026-01-26 15:38:19,331 | INFO     | 
[2026-01-26 09:38:51] 2026-01-26 15:38:19,331 | INFO     | job summary report
[2026-01-26 09:38:51] 2026-01-26 15:38:19,331 | INFO     | --------------------------------------------------
[2026-01-26 09:38:51] 2026-01-26 15:38:19,331 | INFO     | PanDA job id: 6984042546
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | task id: 47929392
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | errors: (none)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | pilot state: finished 
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | transexitcode: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | exeerrorcode: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | exeerrordiag: 
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | exitcode: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | exitmsg: OK
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | cpuconsumptiontime: 20757 s
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | nevents: 400
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | neventsw: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | pid: 702289
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | pgrp: 702289
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | corecount: 12
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | event service: False
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | sizes: {0: 2284280, 10: 2284280, 1887: 2309225, 1888: 2318278, 1890: 2318448}
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | --------------------------------------------------
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | 
[2026-01-26 09:38:51] 2026-01-26 15:38:19,332 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-26 09:38:51] 2026-01-26 15:38:19,341 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | job 6984042546 has completed (purged errors)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,342 | INFO     | overall cleanup function is called
[2026-01-26 09:38:51] 2026-01-26 15:38:19,702 | WARNING  | process 702289 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | INFO     | using path: /var/lib/boinc/slots/5/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | INFO     | using path: /var/lib/boinc/slots/5/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | WARNING  | maxPSS not found in memory monitor output
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/5/PanDA_Pilot-6984042546/payload.stdout) since it has not been created yet
[2026-01-26 09:38:51] 2026-01-26 15:38:19,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-26 09:38:51] 2026-01-26 15:38:19,746 | INFO     | sufficient remaining disk space (3860532822016 B)
[2026-01-26 09:38:51] 2026-01-26 15:38:19,746 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-26 09:38:51] 2026-01-26 15:38:19,746 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/5/PanDA_Pilot-6984042546/HITS.47929392._005247.pool.root.1 since it does not exist
[2026-01-26 09:38:51] 2026-01-26 15:38:19,797 | INFO     | number of running child processes to parent process 702289: 1
[2026-01-26 09:38:51] 2026-01-26 15:38:19,797 | INFO     | maximum number of monitored processes: 6
[2026-01-26 09:38:51] 2026-01-26 15:38:19,797 | INFO     | aborting job monitoring since job object (job id=6984042546) has expired
[2026-01-26 09:38:51] 2026-01-26 15:38:20,349 | INFO     | --- collectZombieJob: --- 10, [702289]
[2026-01-26 09:38:51] 2026-01-26 15:38:20,349 | INFO     | zombie collector waiting for pid 702289
[2026-01-26 09:38:51] 2026-01-26 15:38:20,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 09:38:51] 2026-01-26 15:38:20,349 | INFO     | collected zombie processes
[2026-01-26 09:38:51] 2026-01-26 15:38:20,349 | INFO     | will attempt to kill all subprocesses of pid=702289
[2026-01-26 09:38:51] 2026-01-26 15:38:20,402 | INFO     | process IDs to be killed: [702289] (in reverse order)
[2026-01-26 09:38:51] 2026-01-26 15:38:20,430 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 09:38:51] 2026-01-26 15:38:20,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 09:38:51] 2026-01-26 15:38:20,432 | INFO     | did not find any defunct processes belonging to 702289
[2026-01-26 09:38:51] 2026-01-26 15:38:20,434 | INFO     | did not find any defunct processes belonging to 702289
[2026-01-26 09:38:51] 2026-01-26 15:38:20,434 | INFO     | ready for new job
[2026-01-26 09:38:51] 2026-01-26 15:38:20,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 09:38:51] 2026-01-26 15:38:20,435 | INFO     | **************************************
[2026-01-26 09:38:51] 2026-01-26 15:38:20,435 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 09:38:51] 2026-01-26 15:38:20,435 | INFO     | **************************************
[2026-01-26 09:38:51] 2026-01-26 15:38:20,435 | INFO     | 
[2026-01-26 09:38:51] 2026-01-26 15:38:20,436 | INFO     | architecture information:
[2026-01-26 09:38:51] 2026-01-26 15:38:20,436 | INFO     | executing command: cat /etc/os-release
[2026-01-26 09:38:51] 2026-01-26 15:38:20,444 | INFO     | cat /etc/os-release:
[2026-01-26 09:38:51] NAME="CentOS Linux"
[2026-01-26 09:38:51] VERSION="7 (Core)"
[2026-01-26 09:38:51] ID="centos"
[2026-01-26 09:38:51] ID_LIKE="rhel fedora"
[2026-01-26 09:38:51] VERSION_ID="7"
[2026-01-26 09:38:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 09:38:51] ANSI_COLOR="0;31"
[2026-01-26 09:38:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 09:38:51] HOME_URL="https://www.centos.org/"
[2026-01-26 09:38:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 09:38:51] 
[2026-01-26 09:38:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 09:38:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 09:38:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 09:38:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 09:38:51] 
[2026-01-26 09:38:51] 2026-01-26 15:38:20,444 | INFO     | **************************************
[2026-01-26 09:38:51] 2026-01-26 15:38:20,946 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | INFO     | sufficient remaining disk space (3860532822016 B)
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | INFO     | update_server=False
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 09:38:51] 2026-01-26 15:38:20,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 09:38:51] 2026-01-26 15:38:20,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:38:51] 2026-01-26 15:38:20,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:38:51] 2026-01-26 15:38:20,954 | INFO     | aborting loop
[2026-01-26 09:38:51] 2026-01-26 15:38:21,222 | INFO     | job.realtimelogging is not enabled
[2026-01-26 09:38:51] 2026-01-26 15:38:21,675 | INFO     | all data control threads have been joined
[2026-01-26 09:38:51] 2026-01-26 15:38:21,958 | INFO     | [job] job monitor thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:21,959 | INFO     | [job] retrieve thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:21,959 | INFO     | [job] queue monitor thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,027 | INFO     | [payload] failed_post thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,160 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,227 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,280 | INFO     | all job control threads have been joined
[2026-01-26 09:38:51] 2026-01-26 15:38:22,335 | INFO     | all payload control threads have been joined
[2026-01-26 09:38:51] 2026-01-26 15:38:22,611 | INFO     | [payload] validate_post thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,680 | INFO     | [data] control thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,958 | INFO     | [data] copytool_out thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:22,970 | INFO     | [job] validate thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:23,065 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:23,094 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:23,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 09:38:51] 2026-01-26 15:38:23,153 | INFO     | [data] copytool_in thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:23,285 | INFO     | [job] control thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:23,340 | INFO     | [payload] control thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:27,157 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 09:38:51] 2026-01-26 15:38:41,285 | INFO     | [monitor] cgroup control has ended
[2026-01-26 09:38:51] 2026-01-26 15:38:42,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927463733056)>', '<ExcThread(monitor, started 139927115249408)>']
[2026-01-26 09:38:51] 2026-01-26 15:38:47,333 | INFO     | all workflow threads have been joined
[2026-01-26 09:38:51] 2026-01-26 15:38:47,334 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 09:38:51] 2026-01-26 15:38:47,334 | INFO     | traces error code: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:47,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | INFO     | PID=691540 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | INFO     | .. there are 2 such processes running
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 09:38:51] 2026-01-26 15:38:50,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 09:38:51] 2026-01-26 15:38:50,964 | INFO     | [monitor] control thread has ended
[2026-01-26 09:38:51] 2026-01-26 15:38:51,007 [wrapper] ==== pilot stdout END ====
[2026-01-26 09:38:51] 2026-01-26 15:38:51,009 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 09:38:51] 2026-01-26 15:38:51,011 [wrapper] pilotpid: 691540
[2026-01-26 09:38:51] 2026-01-26 15:38:51,012 [wrapper] Pilot exit status: 0
[2026-01-26 09:38:51] 2026-01-26 15:38:51,016 [wrapper] pandaids: 6984042546
[2026-01-26 09:38:51] 2026-01-26 15:38:51,031 [wrapper] cleanup supervisor_pilot  735748 691541
[2026-01-26 09:38:51] 2026-01-26 15:38:51,032 [wrapper] Test setup, not cleaning
[2026-01-26 09:38:51] 2026-01-26 15:38:51,034 [wrapper] apfmon messages muted
[2026-01-26 09:38:51] 2026-01-26 15:38:51,035 [wrapper] ==== wrapper stdout END ====
[2026-01-26 09:38:51] 2026-01-26 15:38:51,037 [wrapper] ==== wrapper stderr END ====
[2026-01-26 09:38:51]  *** Error codes and diagnostics ***
[2026-01-26 09:38:51]     "exeErrorCode": 0,
[2026-01-26 09:38:51]     "exeErrorDiag": "",
[2026-01-26 09:38:51]     "pilotErrorCode": 0,
[2026-01-26 09:38:51]     "pilotErrorDiag": "",
[2026-01-26 09:38:51]  *** Listing of results directory ***
[2026-01-26 09:38:51] total 439756
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc      5111 Jan 25 23:14 queuedata.json
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc    584422 Jan 25 23:14 pilot3.tar.gz
[2026-01-26 09:38:51] -rwx------. 1 boinc boinc     36322 Jan 25 23:14 runpilot2-wrapper.sh
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc       100 Jan 26 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 09:38:51] -rwxr-xr-x. 1 boinc boinc      7986 Jan 26 09:06 run_atlas
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc       105 Jan 26 09:06 job.xml
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc 255497376 Jan 26 09:06 EVNT.47929390._000198.pool.root.1
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc     15845 Jan 26 09:06 start_atlas.sh
[2026-01-26 09:38:51] drwxrwx--x. 1 boinc boinc        76 Jan 26 09:06 shared
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc    597759 Jan 26 09:06 input.tar.gz
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc     10047 Jan 26 09:06 init_data.xml
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc         0 Jan 26 09:06 boinc_setup_complete
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc         0 Jan 26 09:06 boinc_lockfile
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc      2550 Jan 26 09:06 pandaJob.out
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc        63 Jan 26 09:06 setup.sh.local
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc   1002189 Jan 26 09:06 agis_schedconf.cvmfs.json
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc   1516246 Jan 26 09:06 agis_ddmendpoints.agis.ALL.json
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc       427 Jan 26 09:06 workernode_map.json
[2026-01-26 09:38:51] drwx------. 1 boinc boinc       414 Jan 26 09:06 pilot3
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc 189576486 Jan 26 09:37 HITS.47929392._005247.pool.root.1
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc      1024 Jan 26 09:38 memory_monitor_summary.json
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc    337280 Jan 26 09:38 log.47929392._005247.job.log.tgz.1
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc      6334 Jan 26 09:38 heartbeat.json
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc       529 Jan 26 09:38 boinc_task_state.xml
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc        27 Jan 26 09:38 wrapper_checkpoint.txt
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc      8192 Jan 26 09:38 boinc_mmap_file
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc       821 Jan 26 09:38 pilotlog.txt
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc        95 Jan 26 09:38 pilot_heartbeat.json
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc    317263 Jan 26 09:38 log.47929392._005247.job.log.1
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc       357 Jan 26 09:38 output.list
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc       620 Jan 26 09:38 runtime_log
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc    675840 Jan 26 09:38 result.tar.gz
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc      9395 Jan 26 09:38 runtime_log.err
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc       652 Jan 26 09:38 IBbMDmy6T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT48KDmKRKAVn.diag
[2026-01-26 09:38:51] -rw-r--r--. 1 boinc boinc     21736 Jan 26 09:38 stderr.txt
[2026-01-26 09:38:51] HITS file was successfully produced:
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc 189576486 Jan 26 09:37 shared/HITS.pool.root.1
[2026-01-26 09:38:51]  *** Contents of shared directory: ***
[2026-01-26 09:38:51] total 435908
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc 255497376 Jan 26 09:06 ATLAS.root_0
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc     15845 Jan 26 09:06 start_atlas.sh
[2026-01-26 09:38:51] -rw-r--r--. 2 boinc boinc    597759 Jan 26 09:06 input.tar.gz
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc 189576486 Jan 26 09:37 HITS.pool.root.1
[2026-01-26 09:38:51] -rw-------. 1 boinc boinc    675840 Jan 26 09:38 result.tar.gz
09:38:52 (687647): run_atlas exited; CPU time 20769.837853
09:38:52 (687647): called boinc_finish(0)

</stderr_txt>
]]>

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