Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:39:52 (2056720): wrapper (7.7.26015): starting
20:39:52 (2056720): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 20:39:52] Arguments: --nthreads 3
[2026-01-26 20:39:52] Threads: 3
[2026-01-26 20:39:52] Checking for CVMFS
[2026-01-26 20:39:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 20:39:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 20:39:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 20:39:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 20:39:53] 2.9.2.0 941362 4762 79736 155560 2 49 23307547 36864001 0 130560 0 2309896 99.986 184186 5509 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 20:39:53] CVMFS is ok
[2026-01-26 20:39:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 20:39:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 20:39:53] Further information can be found at the LHC@home message board.
[2026-01-26 20:39:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 20:39:53] Checking for apptainer binary...
[2026-01-26 20:39:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 20:39:53] Running /usr/bin/apptainer --version
[2026-01-26 20:39:53] apptainer version 1.4.1-1.1
[2026-01-26 20:39:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 20:39:53] atlasA230
[2026-01-26 20:39:53] apptainer works
[2026-01-26 20:39:53] Set ATHENA_PROC_NUMBER=3
[2026-01-26 20:39:53] Set ATHENA_CORE_NUMBER=3
[2026-01-26 20:39:53] Starting ATLAS job with PandaID=6983772211
[2026-01-26 20:39:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 22:07:28]  *** The last 200 lines of the pilot log: ***
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | job 6983772211 has completed (purged errors)
[2026-01-26 22:07:28] 2026-01-26 21:06:56,207 | INFO     | overall cleanup function is called
[2026-01-26 22:07:28] 2026-01-26 21:06:57,214 | INFO     | --- collectZombieJob: --- 10, [2065186]
[2026-01-26 22:07:28] 2026-01-26 21:06:57,214 | INFO     | zombie collector waiting for pid 2065186
[2026-01-26 22:07:28] 2026-01-26 21:06:57,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 22:07:28] 2026-01-26 21:06:57,214 | INFO     | collected zombie processes
[2026-01-26 22:07:28] 2026-01-26 21:06:57,214 | INFO     | will attempt to kill all subprocesses of pid=2065186
[2026-01-26 22:07:28] 2026-01-26 21:06:57,272 | INFO     | process IDs to be killed: [2065186] (in reverse order)
[2026-01-26 22:07:28] 2026-01-26 21:06:57,302 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 22:07:28] 2026-01-26 21:06:57,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 22:07:28] 2026-01-26 21:06:57,304 | INFO     | did not find any defunct processes belonging to 2065186
[2026-01-26 22:07:28] 2026-01-26 21:06:57,305 | INFO     | did not find any defunct processes belonging to 2065186
[2026-01-26 22:07:28] 2026-01-26 21:06:57,305 | INFO     | ready for new job
[2026-01-26 22:07:28] 2026-01-26 21:06:57,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | **************************************
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | **************************************
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | 
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | architecture information:
[2026-01-26 22:07:28] 2026-01-26 21:06:57,306 | INFO     | executing command: cat /etc/os-release
[2026-01-26 22:07:28] 2026-01-26 21:06:57,316 | INFO     | cat /etc/os-release:
[2026-01-26 22:07:28] NAME="CentOS Linux"
[2026-01-26 22:07:28] VERSION="7 (Core)"
[2026-01-26 22:07:28] ID="centos"
[2026-01-26 22:07:28] ID_LIKE="rhel fedora"
[2026-01-26 22:07:28] VERSION_ID="7"
[2026-01-26 22:07:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 22:07:28] ANSI_COLOR="0;31"
[2026-01-26 22:07:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 22:07:28] HOME_URL="https://www.centos.org/"
[2026-01-26 22:07:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 22:07:28] 
[2026-01-26 22:07:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 22:07:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 22:07:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 22:07:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 22:07:28] 
[2026-01-26 22:07:28] 2026-01-26 21:06:57,316 | INFO     | **************************************
[2026-01-26 22:07:28] 2026-01-26 21:06:57,819 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | INFO     | sufficient remaining disk space (334480015360 B)
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | INFO     | update_server=False
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 22:07:28] 2026-01-26 21:06:57,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 22:07:28] 2026-01-26 21:06:58,010 | INFO     | all data control threads have been joined
[2026-01-26 22:07:28] 2026-01-26 21:06:58,020 | INFO     | all job control threads have been joined
[2026-01-26 22:07:28] 2026-01-26 21:06:58,150 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 22:07:28] 2026-01-26 21:06:58,150 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 22:07:28] 2026-01-26 21:06:58,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 22:07:28] 2026-01-26 21:06:58,150 | INFO     | will abort loop
[2026-01-26 22:07:28] 2026-01-26 21:06:58,834 | INFO     | [job] retrieve thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:58,834 | INFO     | [job] queue monitor thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,016 | INFO     | [data] control thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,025 | INFO     | [job] control thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,153 | INFO     | [job] validate thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,155 | INFO     | [job] job monitor thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,195 | INFO     | all payload control threads have been joined
[2026-01-26 22:07:28] 2026-01-26 21:06:59,259 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,264 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,338 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,445 | INFO     | [data] copytool_in thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,591 | INFO     | [payload] validate_post thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,646 | INFO     | [payload] failed_post thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:06:59,838 | INFO     | [data] copytool_out thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:07:00,201 | INFO     | [payload] control thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:07:00,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 22:07:28] 2026-01-26 21:07:04,605 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:07:08,636 | INFO     | job.realtimelogging is not enabled
[2026-01-26 22:07:28] 2026-01-26 21:07:08,910 | INFO     | [monitor] cgroup control has ended
[2026-01-26 22:07:28] 2026-01-26 21:07:09,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 22:07:28] 2026-01-26 21:07:10,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434356873024)>', '<ExcThread(monitor, started 140433703278336)>']
[2026-01-26 22:07:28] 2026-01-26 21:07:15,608 | INFO     | all workflow threads have been joined
[2026-01-26 22:07:28] 2026-01-26 21:07:15,608 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 22:07:28] 2026-01-26 21:07:15,608 | INFO     | traces error code: 0
[2026-01-26 22:07:28] 2026-01-26 21:07:15,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | INFO     | PID=2060757 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 22:07:28] 2026-01-26 21:07:28,832 | INFO     | [monitor] control thread has ended
[2026-01-26 22:07:28] 2026-01-26 21:07:28,880 [wrapper] ==== pilot stdout END ====
[2026-01-26 22:07:28] 2026-01-26 21:07:28,882 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 22:07:28] 2026-01-26 21:07:28,885 [wrapper] pilotpid: 2060757
[2026-01-26 22:07:28] 2026-01-26 21:07:28,887 [wrapper] Pilot exit status: 0
[2026-01-26 22:07:28] 2026-01-26 21:07:28,894 [wrapper] pandaids: 6983772211
[2026-01-26 22:07:28] 2026-01-26 21:07:28,913 [wrapper] cleanup supervisor_pilot 2074440 2060758
[2026-01-26 22:07:28] 2026-01-26 21:07:28,915 [wrapper] Test setup, not cleaning
[2026-01-26 22:07:28] 2026-01-26 21:07:28,917 [wrapper] apfmon messages muted
[2026-01-26 22:07:28] 2026-01-26 21:07:28,919 [wrapper] ==== wrapper stdout END ====
[2026-01-26 22:07:28] 2026-01-26 21:07:28,922 [wrapper] ==== wrapper stderr END ====
[2026-01-26 22:07:28]  *** Error codes and diagnostics ***
[2026-01-26 22:07:28]     "exeErrorCode": 0,
[2026-01-26 22:07:28]     "exeErrorDiag": "",
[2026-01-26 22:07:28]     "pilotErrorCode": 0,
[2026-01-26 22:07:28]     "pilotErrorDiag": "",
[2026-01-26 22:07:28]  *** Listing of results directory ***
[2026-01-26 22:07:28] total 675260
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-26 22:07:28] -rwx------ 1 boinc boinc     36322 Jan 26 04:19 runpilot2-wrapper.sh
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:21 queuedata.json
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc       100 Jan 26 20:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 22:07:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 20:39 run_atlas
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc       105 Jan 26 20:39 job.xml
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc 495287642 Jan 26 20:39 EVNT.48318032._000063.pool.root.1
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc    597765 Jan 26 20:39 input.tar.gz
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:39 start_atlas.sh
[2026-01-26 22:07:28] drwxrwx--x 2 boinc boinc      4096 Jan 26 20:39 shared
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:39 boinc_setup_complete
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc      6441 Jan 26 20:39 init_data.xml
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc         0 Jan 26 20:39 boinc_lockfile
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc      2532 Jan 26 20:39 pandaJob.out
[2026-01-26 22:07:28] -rw------- 1 boinc boinc   1006449 Jan 26 20:39 agis_schedconf.cvmfs.json
[2026-01-26 22:07:28] -rw------- 1 boinc boinc   1516246 Jan 26 20:39 agis_ddmendpoints.agis.ALL.json
[2026-01-26 22:07:28] -rw------- 1 boinc boinc       429 Jan 26 20:40 workernode_map.json
[2026-01-26 22:07:28] drwx------ 5 boinc boinc      4096 Jan 26 20:40 pilot3
[2026-01-26 22:07:28] -rw------- 1 boinc boinc        95 Jan 26 22:06 pilot_heartbeat.json
[2026-01-26 22:07:28] -rw------- 1 boinc boinc 190241859 Jan 26 22:06 HITS.48318034._002456.pool.root.1
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc       530 Jan 26 22:06 boinc_task_state.xml
[2026-01-26 22:07:28] -rw------- 1 boinc boinc      1022 Jan 26 22:06 memory_monitor_summary.json
[2026-01-26 22:07:28] -rw------- 1 boinc boinc    245791 Jan 26 22:06 log.48318034._002456.job.log.tgz.1
[2026-01-26 22:07:28] -rw------- 1 boinc boinc      6324 Jan 26 22:06 heartbeat.json
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc        27 Jan 26 22:07 wrapper_checkpoint.txt
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc      8192 Jan 26 22:07 boinc_mmap_file
[2026-01-26 22:07:28] -rw------- 1 boinc boinc       747 Jan 26 22:07 pilotlog.txt
[2026-01-26 22:07:28] -rw------- 1 boinc boinc    761018 Jan 26 22:07 log.48318034._002456.job.log.1
[2026-01-26 22:07:28] -rw------- 1 boinc boinc       357 Jan 26 22:07 output.list
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc       620 Jan 26 22:07 runtime_log
[2026-01-26 22:07:28] -rw------- 1 boinc boinc   1024000 Jan 26 22:07 result.tar.gz
[2026-01-26 22:07:28] -rw------- 1 boinc boinc       660 Jan 26 22:07 y5tLDmrJS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPQ2KDmwgQEZm.diag
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc      8911 Jan 26 22:07 runtime_log.err
[2026-01-26 22:07:28] -rw-r--r-- 1 boinc boinc     11740 Jan 26 22:07 stderr.txt
[2026-01-26 22:07:28] HITS file was successfully produced:
[2026-01-26 22:07:28] -rw------- 1 boinc boinc 190241859 Jan 26 22:06 shared/HITS.pool.root.1
[2026-01-26 22:07:28]  *** Contents of shared directory: ***
[2026-01-26 22:07:28] total 671072
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc 495287642 Jan 26 20:39 ATLAS.root_0
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc    597765 Jan 26 20:39 input.tar.gz
[2026-01-26 22:07:28] -rw-r--r-- 2 boinc boinc     15845 Jan 26 20:39 start_atlas.sh
[2026-01-26 22:07:28] -rw------- 1 boinc boinc 190241859 Jan 26 22:06 HITS.pool.root.1
[2026-01-26 22:07:28] -rw------- 1 boinc boinc   1024000 Jan 26 22:07 result.tar.gz
22:07:29 (2056720): run_atlas exited; CPU time 14943.599338
22:07:29 (2056720): called boinc_finish(0)

</stderr_txt>
]]>

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