Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:53 (310769): wrapper (7.7.26015): starting
02:24:53 (310769): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 02:24:53] Arguments: --nthreads 3
[2026-01-27 02:24:53] Threads: 3
[2026-01-27 02:24:53] Checking for CVMFS
[2026-01-27 02:24:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 02:24:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 02:24:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 02:24:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 02:24:54] 2.9.2.0 2933211 8783 86868 155568 3 49 25828571 36864000 0 130560 0 4103009 99.987 286769 7443 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 02:24:54] CVMFS is ok
[2026-01-27 02:24:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 02:24:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 02:24:54] Further information can be found at the LHC@home message board.
[2026-01-27 02:24:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 02:24:54] Checking for apptainer binary...
[2026-01-27 02:24:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 02:24:54] Running /usr/bin/apptainer --version
[2026-01-27 02:24:54] apptainer version 1.4.1-1.1
[2026-01-27 02:24:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 02:24:54] thA323
[2026-01-27 02:24:54] apptainer works
[2026-01-27 02:24:54] Set ATHENA_PROC_NUMBER=3
[2026-01-27 02:24:54] Set ATHENA_CORE_NUMBER=3
[2026-01-27 02:24:54] Starting ATLAS job with PandaID=6983772669
[2026-01-27 02:24:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 03:52:16]  *** The last 200 lines of the pilot log: ***
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 03:52:16] 2026-01-27 02:51:18,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,132 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 03:52:16] 2026-01-27 02:51:18,132 | INFO     | job 6983772669 has completed (purged errors)
[2026-01-27 03:52:16] 2026-01-27 02:51:18,132 | INFO     | overall cleanup function is called
[2026-01-27 03:52:16] 2026-01-27 02:51:19,138 | INFO     | --- collectZombieJob: --- 10, [319247]
[2026-01-27 03:52:16] 2026-01-27 02:51:19,139 | INFO     | zombie collector waiting for pid 319247
[2026-01-27 03:52:16] 2026-01-27 02:51:19,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 03:52:16] 2026-01-27 02:51:19,139 | INFO     | collected zombie processes
[2026-01-27 03:52:16] 2026-01-27 02:51:19,139 | INFO     | will attempt to kill all subprocesses of pid=319247
[2026-01-27 03:52:16] 2026-01-27 02:51:19,208 | INFO     | process IDs to be killed: [319247] (in reverse order)
[2026-01-27 03:52:16] 2026-01-27 02:51:19,242 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 03:52:16] 2026-01-27 02:51:19,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 03:52:16] 2026-01-27 02:51:19,244 | INFO     | did not find any defunct processes belonging to 319247
[2026-01-27 03:52:16] 2026-01-27 02:51:19,246 | INFO     | did not find any defunct processes belonging to 319247
[2026-01-27 03:52:16] 2026-01-27 02:51:19,246 | INFO     | ready for new job
[2026-01-27 03:52:16] 2026-01-27 02:51:19,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 03:52:16] 2026-01-27 02:51:19,247 | INFO     | **************************************
[2026-01-27 03:52:16] 2026-01-27 02:51:19,247 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 03:52:16] 2026-01-27 02:51:19,247 | INFO     | **************************************
[2026-01-27 03:52:16] 2026-01-27 02:51:19,247 | INFO     | 
[2026-01-27 03:52:16] 2026-01-27 02:51:19,248 | INFO     | architecture information:
[2026-01-27 03:52:16] 2026-01-27 02:51:19,248 | INFO     | executing command: cat /etc/os-release
[2026-01-27 03:52:16] 2026-01-27 02:51:19,257 | INFO     | cat /etc/os-release:
[2026-01-27 03:52:16] NAME="CentOS Linux"
[2026-01-27 03:52:16] VERSION="7 (Core)"
[2026-01-27 03:52:16] ID="centos"
[2026-01-27 03:52:16] ID_LIKE="rhel fedora"
[2026-01-27 03:52:16] VERSION_ID="7"
[2026-01-27 03:52:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 03:52:16] ANSI_COLOR="0;31"
[2026-01-27 03:52:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 03:52:16] HOME_URL="https://www.centos.org/"
[2026-01-27 03:52:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 03:52:16] 
[2026-01-27 03:52:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 03:52:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 03:52:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 03:52:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 03:52:16] 
[2026-01-27 03:52:16] 2026-01-27 02:51:19,257 | INFO     | **************************************
[2026-01-27 03:52:16] 2026-01-27 02:51:19,761 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 03:52:16] 2026-01-27 02:51:19,774 | INFO     | sufficient remaining disk space (276035534848 B)
[2026-01-27 03:52:16] 2026-01-27 02:51:19,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | INFO     | update_server=False
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 03:52:16] 2026-01-27 02:51:19,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 03:52:16] 2026-01-27 02:51:20,083 | INFO     | all job control threads have been joined
[2026-01-27 03:52:16] 2026-01-27 02:51:20,121 | INFO     | all payload control threads have been joined
[2026-01-27 03:52:16] 2026-01-27 02:51:20,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 03:52:16] 2026-01-27 02:51:20,177 | INFO     | all data control threads have been joined
[2026-01-27 03:52:16] 2026-01-27 02:51:20,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:52:16] 2026-01-27 02:51:20,573 | INFO     | aborting loop
[2026-01-27 03:52:16] 2026-01-27 02:51:20,780 | INFO     | [job] queue monitor thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:20,781 | INFO     | [job] retrieve thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,088 | INFO     | [job] control thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,127 | INFO     | [payload] control thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,182 | INFO     | [data] control thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,307 | INFO     | [job] validate thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,363 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,385 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,389 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,579 | INFO     | [job] job monitor thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,607 | INFO     | [data] copytool_in thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:21,894 | INFO     | [payload] validate_post thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:22,175 | INFO     | [data] copytool_out thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:22,246 | INFO     | [payload] failed_post thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:22,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 03:52:16] 2026-01-27 02:51:26,667 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:51:30,603 | INFO     | job.realtimelogging is not enabled
[2026-01-27 03:52:16] 2026-01-27 02:51:31,608 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 03:52:16] 2026-01-27 02:52:10,861 | INFO     | [monitor] cgroup control has ended
[2026-01-27 03:52:16] 2026-01-27 02:52:10,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253001127744)>', '<ExcThread(monitor, started 140252131870464)>']
[2026-01-27 03:52:16] 2026-01-27 02:52:11,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 03:52:16] 2026-01-27 02:52:11,048 | INFO     | [monitor] control thread has ended
[2026-01-27 03:52:16] 2026-01-27 02:52:16,016 | INFO     | all workflow threads have been joined
[2026-01-27 03:52:16] 2026-01-27 02:52:16,017 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 03:52:16] 2026-01-27 02:52:16,017 | INFO     | traces error code: 0
[2026-01-27 03:52:16] 2026-01-27 02:52:16,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 03:52:16] 2026-01-27 02:52:16,068 [wrapper] ==== pilot stdout END ====
[2026-01-27 03:52:16] 2026-01-27 02:52:16,071 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 03:52:16] 2026-01-27 02:52:16,074 [wrapper] pilotpid: 314806
[2026-01-27 03:52:16] 2026-01-27 02:52:16,076 [wrapper] Pilot exit status: 0
[2026-01-27 03:52:16] 2026-01-27 02:52:16,084 [wrapper] pandaids: 6983772669
[2026-01-27 03:52:16] 2026-01-27 02:52:16,108 [wrapper] cleanup supervisor_pilot  325883 314807
[2026-01-27 03:52:16] 2026-01-27 02:52:16,110 [wrapper] Test setup, not cleaning
[2026-01-27 03:52:16] 2026-01-27 02:52:16,113 [wrapper] apfmon messages muted
[2026-01-27 03:52:16] 2026-01-27 02:52:16,115 [wrapper] ==== wrapper stdout END ====
[2026-01-27 03:52:16] 2026-01-27 02:52:16,118 [wrapper] ==== wrapper stderr END ====
[2026-01-27 03:52:16]  *** Error codes and diagnostics ***
[2026-01-27 03:52:16]     "exeErrorCode": 0,
[2026-01-27 03:52:16]     "exeErrorDiag": "",
[2026-01-27 03:52:16]     "pilotErrorCode": 0,
[2026-01-27 03:52:16]     "pilotErrorDiag": "",
[2026-01-27 03:52:16]  *** Listing of results directory ***
[2026-01-27 03:52:16] total 671944
[2026-01-27 03:52:16] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc       100 Jan 27 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 03:52:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 02:24 run_atlas
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc       105 Jan 27 02:24 job.xml
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc 501494860 Jan 27 02:24 EVNT.48318040._000036.pool.root.1
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc    597761 Jan 27 02:24 input.tar.gz
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:24 start_atlas.sh
[2026-01-27 03:52:16] drwxrwx--x 2 boinc boinc      4096 Jan 27 02:24 shared
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:24 boinc_setup_complete
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc      6446 Jan 27 02:24 init_data.xml
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:24 boinc_lockfile
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc      2533 Jan 27 02:24 pandaJob.out
[2026-01-27 03:52:16] -rw------- 1 boinc boinc   1006441 Jan 27 02:25 agis_schedconf.cvmfs.json
[2026-01-27 03:52:16] -rw------- 1 boinc boinc   1516246 Jan 27 02:25 agis_ddmendpoints.agis.ALL.json
[2026-01-27 03:52:16] -rw------- 1 boinc boinc       422 Jan 27 02:25 workernode_map.json
[2026-01-27 03:52:16] drwx------ 5 boinc boinc      4096 Jan 27 02:25 pilot3
[2026-01-27 03:52:16] -rw------- 1 boinc boinc        95 Jan 27 03:50 pilot_heartbeat.json
[2026-01-27 03:52:16] -rw------- 1 boinc boinc 180590475 Jan 27 03:50 HITS.48318042._001793.pool.root.1
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc       530 Jan 27 03:50 boinc_task_state.xml
[2026-01-27 03:52:16] -rw------- 1 boinc boinc      1013 Jan 27 03:51 memory_monitor_summary.json
[2026-01-27 03:52:16] -rw------- 1 boinc boinc    274607 Jan 27 03:51 log.48318042._001793.job.log.tgz.1
[2026-01-27 03:52:16] -rw------- 1 boinc boinc      6296 Jan 27 03:51 heartbeat.json
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc      8192 Jan 27 03:52 boinc_mmap_file
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc        27 Jan 27 03:52 wrapper_checkpoint.txt
[2026-01-27 03:52:16] -rw------- 1 boinc boinc      4624 Jan 27 03:52 pilotlog.txt
[2026-01-27 03:52:16] -rw------- 1 boinc boinc    752715 Jan 27 03:52 log.48318042._001793.job.log.1
[2026-01-27 03:52:16] -rw------- 1 boinc boinc       357 Jan 27 03:52 output.list
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc       620 Jan 27 03:52 runtime_log
[2026-01-27 03:52:16] -rw------- 1 boinc boinc   1044480 Jan 27 03:52 result.tar.gz
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc      8896 Jan 27 03:52 runtime_log.err
[2026-01-27 03:52:16] -rw------- 1 boinc boinc       657 Jan 27 03:52 IquNDmIIS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAy8KDmTCtiKm.diag
[2026-01-27 03:52:16] -rw-r--r-- 1 boinc boinc     11523 Jan 27 03:52 stderr.txt
[2026-01-27 03:52:16] HITS file was successfully produced:
[2026-01-27 03:52:16] -rw------- 1 boinc boinc 180590475 Jan 27 03:50 shared/HITS.pool.root.1
[2026-01-27 03:52:16]  *** Contents of shared directory: ***
[2026-01-27 03:52:16] total 667732
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc 501494860 Jan 27 02:24 ATLAS.root_0
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc    597761 Jan 27 02:24 input.tar.gz
[2026-01-27 03:52:16] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:24 start_atlas.sh
[2026-01-27 03:52:16] -rw------- 1 boinc boinc 180590475 Jan 27 03:50 HITS.pool.root.1
[2026-01-27 03:52:16] -rw------- 1 boinc boinc   1044480 Jan 27 03:52 result.tar.gz
03:52:17 (310769): run_atlas exited; CPU time 14857.828481
03:52:17 (310769): called boinc_finish(0)

</stderr_txt>
]]>

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