Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:47:54 (1624989): wrapper (7.7.26015): starting
02:47:54 (1624989): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 02:47:54] Arguments: --nthreads 3
[2026-01-27 02:47:54] Threads: 3
[2026-01-27 02:47:54] Checking for CVMFS
[2026-01-27 02:47:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 02:47:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 02:47:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 02:47:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 02:47:55] 2.9.2.0 197560 9202 94968 155568 2 50 18442453 36864000 0 130560 0 4148940 99.987 295024 4402 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 02:47:55] CVMFS is ok
[2026-01-27 02:47:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 02:47:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 02:47:55] Further information can be found at the LHC@home message board.
[2026-01-27 02:47:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 02:47:55] Checking for apptainer binary...
[2026-01-27 02:47:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 02:47:55] Running /usr/bin/apptainer --version
[2026-01-27 02:47:55] apptainer version 1.4.1-1.1
[2026-01-27 02:47:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 02:47:55] thA331a
[2026-01-27 02:47:55] apptainer works
[2026-01-27 02:47:55] Set ATHENA_PROC_NUMBER=3
[2026-01-27 02:47:55] Set ATHENA_CORE_NUMBER=3
[2026-01-27 02:47:55] Starting ATLAS job with PandaID=6983772674
[2026-01-27 02:47:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 04:15:22]  *** The last 200 lines of the pilot log: ***
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,250 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 04:15:22] 2026-01-27 03:14:50,250 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,250 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 04:15:22] 2026-01-27 03:14:50,250 | INFO     | job 6983772674 has completed (purged errors)
[2026-01-27 04:15:22] 2026-01-27 03:14:50,250 | INFO     | overall cleanup function is called
[2026-01-27 04:15:22] 2026-01-27 03:14:51,256 | INFO     | --- collectZombieJob: --- 10, [1633457]
[2026-01-27 04:15:22] 2026-01-27 03:14:51,257 | INFO     | zombie collector waiting for pid 1633457
[2026-01-27 04:15:22] 2026-01-27 03:14:51,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 04:15:22] 2026-01-27 03:14:51,257 | INFO     | collected zombie processes
[2026-01-27 04:15:22] 2026-01-27 03:14:51,257 | INFO     | will attempt to kill all subprocesses of pid=1633457
[2026-01-27 04:15:22] 2026-01-27 03:14:51,297 | INFO     | process IDs to be killed: [1633457] (in reverse order)
[2026-01-27 04:15:22] 2026-01-27 03:14:51,321 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 04:15:22] 2026-01-27 03:14:51,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 04:15:22] 2026-01-27 03:14:51,322 | INFO     | did not find any defunct processes belonging to 1633457
[2026-01-27 04:15:22] 2026-01-27 03:14:51,323 | INFO     | did not find any defunct processes belonging to 1633457
[2026-01-27 04:15:22] 2026-01-27 03:14:51,323 | INFO     | ready for new job
[2026-01-27 04:15:22] 2026-01-27 03:14:51,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 04:15:22] 2026-01-27 03:14:51,324 | INFO     | **************************************
[2026-01-27 04:15:22] 2026-01-27 03:14:51,324 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 04:15:22] 2026-01-27 03:14:51,324 | INFO     | **************************************
[2026-01-27 04:15:22] 2026-01-27 03:14:51,324 | INFO     | 
[2026-01-27 04:15:22] 2026-01-27 03:14:51,324 | INFO     | architecture information:
[2026-01-27 04:15:22] 2026-01-27 03:14:51,325 | INFO     | executing command: cat /etc/os-release
[2026-01-27 04:15:22] 2026-01-27 03:14:51,333 | INFO     | cat /etc/os-release:
[2026-01-27 04:15:22] NAME="CentOS Linux"
[2026-01-27 04:15:22] VERSION="7 (Core)"
[2026-01-27 04:15:22] ID="centos"
[2026-01-27 04:15:22] ID_LIKE="rhel fedora"
[2026-01-27 04:15:22] VERSION_ID="7"
[2026-01-27 04:15:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 04:15:22] ANSI_COLOR="0;31"
[2026-01-27 04:15:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 04:15:22] HOME_URL="https://www.centos.org/"
[2026-01-27 04:15:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 04:15:22] 
[2026-01-27 04:15:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 04:15:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 04:15:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 04:15:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 04:15:22] 
[2026-01-27 04:15:22] 2026-01-27 03:14:51,333 | INFO     | **************************************
[2026-01-27 04:15:22] 2026-01-27 03:14:51,836 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | INFO     | sufficient remaining disk space (338891374592 B)
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | INFO     | update_server=False
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 04:15:22] 2026-01-27 03:14:51,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:15:22] 2026-01-27 03:14:52,072 | INFO     | all job control threads have been joined
[2026-01-27 04:15:22] 2026-01-27 03:14:52,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 04:15:22] 2026-01-27 03:14:52,777 | INFO     | all payload control threads have been joined
[2026-01-27 04:15:22] 2026-01-27 03:14:52,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:15:22] 2026-01-27 03:14:52,854 | INFO     | [job] retrieve thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:52,854 | INFO     | aborting loop
[2026-01-27 04:15:22] 2026-01-27 03:14:52,854 | INFO     | [job] queue monitor thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:52,876 | INFO     | all data control threads have been joined
[2026-01-27 04:15:22] 2026-01-27 03:14:52,886 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:52,886 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,032 | INFO     | [data] copytool_in thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,078 | INFO     | [job] control thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,263 | INFO     | [payload] validate_post thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,783 | INFO     | [payload] control thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,860 | INFO     | [job] job monitor thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:53,881 | INFO     | [data] control thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:54,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 04:15:22] 2026-01-27 03:14:54,184 | INFO     | [payload] failed_post thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:54,236 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:54,252 | INFO     | [job] validate thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:54,590 | INFO     | [data] copytool_out thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:14:58,110 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:15:02,278 | INFO     | job.realtimelogging is not enabled
[2026-01-27 04:15:22] 2026-01-27 03:15:03,283 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 04:15:22] 2026-01-27 03:15:10,902 | INFO     | [monitor] cgroup control has ended
[2026-01-27 04:15:22] 2026-01-27 03:15:12,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506595706688)>', '<ExcThread(monitor, started 140506322716416)>']
[2026-01-27 04:15:22] 2026-01-27 03:15:17,504 | INFO     | all workflow threads have been joined
[2026-01-27 04:15:22] 2026-01-27 03:15:17,504 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 04:15:22] 2026-01-27 03:15:17,505 | INFO     | traces error code: 0
[2026-01-27 04:15:22] 2026-01-27 03:15:17,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | INFO     | PID=1629034 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 04:15:22] 2026-01-27 03:15:21,888 | INFO     | [monitor] control thread has ended
[2026-01-27 04:15:22] 2026-01-27 03:15:21,934 [wrapper] ==== pilot stdout END ====
[2026-01-27 04:15:22] 2026-01-27 03:15:21,936 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 04:15:22] 2026-01-27 03:15:21,938 [wrapper] pilotpid: 1629034
[2026-01-27 04:15:22] 2026-01-27 03:15:21,941 [wrapper] Pilot exit status: 0
[2026-01-27 04:15:22] 2026-01-27 03:15:21,948 [wrapper] pandaids: 6983772674
[2026-01-27 04:15:22] 2026-01-27 03:15:21,963 [wrapper] cleanup supervisor_pilot 1638478 1629035
[2026-01-27 04:15:22] 2026-01-27 03:15:21,965 [wrapper] Test setup, not cleaning
[2026-01-27 04:15:22] 2026-01-27 03:15:21,968 [wrapper] apfmon messages muted
[2026-01-27 04:15:22] 2026-01-27 03:15:21,970 [wrapper] ==== wrapper stdout END ====
[2026-01-27 04:15:22] 2026-01-27 03:15:21,972 [wrapper] ==== wrapper stderr END ====
[2026-01-27 04:15:22]  *** Error codes and diagnostics ***
[2026-01-27 04:15:22]     "exeErrorCode": 0,
[2026-01-27 04:15:22]     "exeErrorDiag": "",
[2026-01-27 04:15:22]     "pilotErrorCode": 0,
[2026-01-27 04:15:22]     "pilotErrorDiag": "",
[2026-01-27 04:15:22]  *** Listing of results directory ***
[2026-01-27 04:15:22] total 671800
[2026-01-27 04:15:22] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc       100 Jan 27 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 04:15:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 02:47 run_atlas
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc       105 Jan 27 02:47 job.xml
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc 501494860 Jan 27 02:47 EVNT.48318040._000036.pool.root.1
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc    597763 Jan 27 02:47 input.tar.gz
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:47 start_atlas.sh
[2026-01-27 04:15:22] drwxrwx--x 2 boinc boinc      4096 Jan 27 02:47 shared
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:47 boinc_setup_complete
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc      6441 Jan 27 02:47 init_data.xml
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:47 boinc_lockfile
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc      2533 Jan 27 02:47 pandaJob.out
[2026-01-27 04:15:22] -rw------- 1 boinc boinc   1006441 Jan 27 02:48 agis_schedconf.cvmfs.json
[2026-01-27 04:15:22] -rw------- 1 boinc boinc   1516246 Jan 27 02:48 agis_ddmendpoints.agis.ALL.json
[2026-01-27 04:15:22] -rw------- 1 boinc boinc       427 Jan 27 02:48 workernode_map.json
[2026-01-27 04:15:22] drwx------ 5 boinc boinc      4096 Jan 27 02:48 pilot3
[2026-01-27 04:15:22] -rw------- 1 boinc boinc 180423677 Jan 27 04:14 HITS.48318042._001798.pool.root.1
[2026-01-27 04:15:22] -rw------- 1 boinc boinc        95 Jan 27 04:14 pilot_heartbeat.json
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc       530 Jan 27 04:14 boinc_task_state.xml
[2026-01-27 04:15:22] -rw------- 1 boinc boinc      1018 Jan 27 04:14 memory_monitor_summary.json
[2026-01-27 04:15:22] -rw------- 1 boinc boinc    279575 Jan 27 04:14 log.48318042._001798.job.log.tgz.1
[2026-01-27 04:15:22] -rw------- 1 boinc boinc      6312 Jan 27 04:14 heartbeat.json
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc      8192 Jan 27 04:15 boinc_mmap_file
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc        27 Jan 27 04:15 wrapper_checkpoint.txt
[2026-01-27 04:15:22] -rw------- 1 boinc boinc       747 Jan 27 04:15 pilotlog.txt
[2026-01-27 04:15:22] -rw------- 1 boinc boinc    760593 Jan 27 04:15 log.48318042._001798.job.log.1
[2026-01-27 04:15:22] -rw------- 1 boinc boinc       357 Jan 27 04:15 output.list
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:15 runtime_log
[2026-01-27 04:15:22] -rw------- 1 boinc boinc   1054720 Jan 27 04:15 result.tar.gz
[2026-01-27 04:15:22] -rw------- 1 boinc boinc       658 Jan 27 04:15 zZ0NDmIIS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFy8KDmMSfugm.diag
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc      8901 Jan 27 04:15 runtime_log.err
[2026-01-27 04:15:22] -rw-r--r-- 1 boinc boinc     12231 Jan 27 04:15 stderr.txt
[2026-01-27 04:15:22] HITS file was successfully produced:
[2026-01-27 04:15:22] -rw------- 1 boinc boinc 180423677 Jan 27 04:14 shared/HITS.pool.root.1
[2026-01-27 04:15:22]  *** Contents of shared directory: ***
[2026-01-27 04:15:22] total 667580
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc 501494860 Jan 27 02:47 ATLAS.root_0
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc    597763 Jan 27 02:47 input.tar.gz
[2026-01-27 04:15:22] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:47 start_atlas.sh
[2026-01-27 04:15:22] -rw------- 1 boinc boinc 180423677 Jan 27 04:14 HITS.pool.root.1
[2026-01-27 04:15:22] -rw------- 1 boinc boinc   1054720 Jan 27 04:15 result.tar.gz
04:15:23 (1624989): run_atlas exited; CPU time 14973.935779
04:15:23 (1624989): called boinc_finish(0)

</stderr_txt>
]]>

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