Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:09:47 (1440944): wrapper (7.7.26015): starting
08:09:47 (1440944): wrapper: running run_atlas (--nthreads 10)
[2026-01-26 08:09:47] Arguments: --nthreads 10
[2026-01-26 08:09:47] Threads: 10
[2026-01-26 08:09:47] Checking for CVMFS
[2026-01-26 08:09:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 08:09:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 08:09:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 08:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 08:09:49] 2.13.3.0 10276 45905 163988 155547 0 533 38380801 40960000 31881 16776704 0 234397942 99.757 148430927 48309 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 08:09:49] CVMFS is ok
[2026-01-26 08:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 08:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 08:09:49] Further information can be found at the LHC@home message board.
[2026-01-26 08:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 08:09:49] Checking for apptainer binary...
[2026-01-26 08:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 08:09:49] Running /usr/bin/apptainer --version
[2026-01-26 08:09:49] apptainer version 1.4.5-2.el9
[2026-01-26 08:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 08:09:49] c-208-36.aglt2.org
[2026-01-26 08:09:49] apptainer works
[2026-01-26 08:09:49] Set ATHENA_PROC_NUMBER=10
[2026-01-26 08:09:49] Set ATHENA_CORE_NUMBER=10
[2026-01-26 08:09:49] Starting ATLAS job with PandaID=6983772079
[2026-01-26 08:09:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 09:25:35]  *** The last 200 lines of the pilot log: ***
[2026-01-26 09:25:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-26 09:25:35]  is_altstaged=None
[2026-01-26 09:25:35]  is_tar=False
[2026-01-26 09:25:35]  lfn=log.48318034._002324.job.log.tgz.1
[2026-01-26 09:25:35]  mtime=0
[2026-01-26 09:25:35]  protocol_id=None
[2026-01-26 09:25:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 09:25:35]  replicas=None
[2026-01-26 09:25:35]  scope=mc23_13p6TeV
[2026-01-26 09:25:35]  status=None
[2026-01-26 09:25:35]  status_code=0
[2026-01-26 09:25:35]  storage_token=
[2026-01-26 09:25:35]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6983772079/log.48318034._002324.job.log.tgz.1
[2026-01-26 09:25:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/a9/log.48318034._002324.job.log.tgz.1
[2026-01-26 09:25:35]  workdir=None
[2026-01-26 09:25:35] ]
[2026-01-26 09:25:35] 2026-01-26 14:24:53,862 | INFO     | transferring file log.48318034._002324.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6983772079/log.48318034._002324.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 09:25:35] 2026-01-26 14:24:53,862 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6983772079/log.48318034._002324.job.log.tgz.1 /tmp/boinchome/slots/1/log.48318034._002324.job
[2026-01-26 09:25:35] 2026-01-26 14:24:54,040 | INFO     | adding to output.list: log.48318034._002324.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/a9/log.48318034._002324.job.log.tg
[2026-01-26 09:25:35] 2026-01-26 14:24:54,041 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 09:25:35] 2026-01-26 14:24:54,041 | INFO     | summary of transferred files:
[2026-01-26 09:25:35] 2026-01-26 14:24:54,041 | INFO     |  -- lfn=log.48318034._002324.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 09:25:35] 2026-01-26 14:24:54,041 | INFO     | stage-out finished correctly
[2026-01-26 09:25:35] 2026-01-26 14:24:54,517 | INFO     | time since job start (4437s) is within the limit (349056.0s)
[2026-01-26 09:25:35] 2026-01-26 14:24:55,484 | INFO     | monitor loop #281: job 0:6983772079 is in state 'finished'
[2026-01-26 09:25:35] 2026-01-26 14:24:55,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 09:25:35] 2026-01-26 14:24:56,358 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 09:25:35] 2026-01-26 14:24:56,531 | INFO     | time since job start (4439s) is within the limit (349056.0s)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,854 | INFO     | job 6983772079 has state=finished
[2026-01-26 09:25:35] 2026-01-26 14:24:57,854 | INFO     | preparing for final server update for job 6983772079 in state='finished'
[2026-01-26 09:25:35] 2026-01-26 14:24:57,854 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-6983772079/jobReport.json
[2026-01-26 09:25:35] 2026-01-26 14:24:57,857 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-01-26 09:25:35] 2026-01-26 14:24:57,857 | INFO     | this job has now completed (state=finished)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,857 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,857 | INFO     | log transfer has been attempted: DONE
[2026-01-26 09:25:35] 2026-01-26 14:24:57,857 | INFO     | job 6983772079 has finished - writing final server update
[2026-01-26 09:25:35] 2026-01-26 14:24:57,858 | INFO     | total number of processed events: 400 (read)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,963 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6983772079/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,963 | INFO     | extracted standard info from prmon json
[2026-01-26 09:25:35] 2026-01-26 14:24:57,963 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 09:25:35] 2026-01-26 14:24:57,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 09:25:35] 2026-01-26 14:24:57,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 09:25:35] 2026-01-26 14:24:57,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | fitting pss+swap vs Time
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | sum of square deviations: 85135139.93846157
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | sum of deviations: 3176267444.523077
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | mean x: 1769435356.0307693
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | mean y: 2585560.7384615387
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | intersect: -66012457353.51639
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | chi2: 0.08063473049620092
[2026-01-26 09:25:35] 2026-01-26 14:24:57,966 | INFO     | current memory leak: 37.31 B/s (using 65 data points, chi2=0.08)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | could have reported an average CPU frequency of 3800 MHz (6 samples)
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | ..............................
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . Timing measurements:
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . get job = 0 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . initial setup = 21 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . payload setup = 20 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . stage-in = 0 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . payload execution = 4398 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . stage-out = 1 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | . log creation = 0 s
[2026-01-26 09:25:35] 2026-01-26 14:24:57,967 | INFO     | ..............................
[2026-01-26 09:25:35] 2026-01-26 14:24:58,150 | INFO     | 
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | job summary report
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | --------------------------------------------------
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | PanDA job id: 6983772079
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | task id: 48318034
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | errors: (none)
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | pilot state: finished 
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | transexitcode: 0
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | exeerrorcode: 0
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | exeerrordiag: 
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | exitcode: 0
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | exitmsg: OK
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | cpuconsumptiontime: 23173 s
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | nevents: 400
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | neventsw: 0
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | pid: 1461874
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | pgrp: 1461874
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | corecount: 10
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | event service: False
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | sizes: {0: 2283993, 1: 2284199, 11: 2284227, 4423: 2310300, 4424: 2310299, 4426: 2319353, 4428: 2319537, 4430: 2319731}
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | --------------------------------------------------
[2026-01-26 09:25:35] 2026-01-26 14:24:58,152 | INFO     | 
[2026-01-26 09:25:35] 2026-01-26 14:24:58,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | job 6983772079 has completed (purged errors)
[2026-01-26 09:25:35] 2026-01-26 14:24:58,322 | INFO     | overall cleanup function is called
[2026-01-26 09:25:35] 2026-01-26 14:24:59,242 | INFO     | PID=1448722 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-26 09:25:35] 2026-01-26 14:24:59,243 | INFO     | .. there are 34 such processes running
[2026-01-26 09:25:35] 2026-01-26 14:24:59,340 | INFO     | --- collectZombieJob: --- 10, [1461874]
[2026-01-26 09:25:35] 2026-01-26 14:24:59,341 | INFO     | zombie collector waiting for pid 1461874
[2026-01-26 09:25:35] 2026-01-26 14:24:59,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 09:25:35] 2026-01-26 14:24:59,341 | INFO     | collected zombie processes
[2026-01-26 09:25:35] 2026-01-26 14:24:59,341 | INFO     | will attempt to kill all subprocesses of pid=1461874
[2026-01-26 09:25:35] 2026-01-26 14:25:00,530 | INFO     | process IDs to be killed: [1461874] (in reverse order)
[2026-01-26 09:25:35] 2026-01-26 14:25:01,571 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 09:25:35] 2026-01-26 14:25:01,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 09:25:35] 2026-01-26 14:25:01,671 | INFO     | did not find any defunct processes belonging to 1461874
[2026-01-26 09:25:35] 2026-01-26 14:25:01,771 | INFO     | did not find any defunct processes belonging to 1461874
[2026-01-26 09:25:35] 2026-01-26 14:25:01,771 | INFO     | ready for new job
[2026-01-26 09:25:35] 2026-01-26 14:25:01,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 09:25:35] 2026-01-26 14:25:01,773 | INFO     | **************************************
[2026-01-26 09:25:35] 2026-01-26 14:25:01,773 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 09:25:35] 2026-01-26 14:25:01,773 | INFO     | **************************************
[2026-01-26 09:25:35] 2026-01-26 14:25:01,773 | INFO     | 
[2026-01-26 09:25:35] 2026-01-26 14:25:01,808 | INFO     | architecture information:
[2026-01-26 09:25:35] 2026-01-26 14:25:01,822 | INFO     | executing command: cat /etc/os-release
[2026-01-26 09:25:35] 2026-01-26 14:25:01,925 | INFO     | cat /etc/os-release:
[2026-01-26 09:25:35] NAME="CentOS Linux"
[2026-01-26 09:25:35] VERSION="7 (Core)"
[2026-01-26 09:25:35] ID="centos"
[2026-01-26 09:25:35] ID_LIKE="rhel fedora"
[2026-01-26 09:25:35] VERSION_ID="7"
[2026-01-26 09:25:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 09:25:35] ANSI_COLOR="0;31"
[2026-01-26 09:25:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 09:25:35] HOME_URL="https://www.centos.org/"
[2026-01-26 09:25:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 09:25:35] 
[2026-01-26 09:25:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 09:25:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 09:25:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 09:25:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 09:25:35] 
[2026-01-26 09:25:35] 2026-01-26 14:25:01,927 | INFO     | **************************************
[2026-01-26 09:25:35] 2026-01-26 14:25:02,431 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 09:25:35] 2026-01-26 14:25:02,538 | INFO     | sufficient remaining disk space (168278622208 B)
[2026-01-26 09:25:35] 2026-01-26 14:25:02,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 09:25:35] 2026-01-26 14:25:02,539 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 09:25:35] 2026-01-26 14:25:02,539 | INFO     | update_server=False
[2026-01-26 09:25:35] 2026-01-26 14:25:02,539 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 09:25:35] 2026-01-26 14:25:02,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 09:25:35] 2026-01-26 14:25:02,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:25:35] 2026-01-26 14:25:02,540 | INFO     | aborting loop
[2026-01-26 09:25:35] 2026-01-26 14:25:02,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 09:25:35] 2026-01-26 14:25:02,998 | INFO     | all job control threads have been joined
[2026-01-26 09:25:35] 2026-01-26 14:25:03,058 | INFO     | all payload control threads have been joined
[2026-01-26 09:25:35] 2026-01-26 14:25:03,167 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:25:35] 2026-01-26 14:25:03,364 | INFO     | all data control threads have been joined
[2026-01-26 09:25:35] 2026-01-26 14:25:03,545 | INFO     | [job] retrieve thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:03,546 | INFO     | [job] job monitor thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:03,682 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:03,941 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,005 | INFO     | [job] control thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,065 | INFO     | [payload] control thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,078 | INFO     | [payload] failed_post thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,174 | INFO     | [job] queue monitor thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,289 | INFO     | [job] validate thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,396 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,399 | INFO     | [data] control thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,540 | INFO     | [monitor] cgroup control has ended
[2026-01-26 09:25:35] 2026-01-26 14:25:04,547 | INFO     | [data] copytool_out thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:04,613 | INFO     | [payload] validate_post thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:05,005 | INFO     | [data] copytool_in thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:05,009 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:06,687 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 09:25:35] 2026-01-26 14:25:07,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635786053440)>', '<ExcThread(monitor, started 139635511805696)>']
[2026-01-26 09:25:35] 2026-01-26 14:25:12,696 | INFO     | all workflow threads have been joined
[2026-01-26 09:25:35] 2026-01-26 14:25:12,697 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 09:25:35] 2026-01-26 14:25:12,697 | INFO     | traces error code: 0
[2026-01-26 09:25:35] 2026-01-26 14:25:12,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | INFO     | PID=1448722 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | INFO     | .. there are 34 such processes running
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 09:25:35] 2026-01-26 14:25:33,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 09:25:35] 2026-01-26 14:25:33,468 | INFO     | [monitor] control thread has ended
[2026-01-26 09:25:35] 2026-01-26 14:25:34,186 [wrapper] ==== pilot stdout END ====
[2026-01-26 09:25:35] 2026-01-26 14:25:34,189 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 09:25:35] 2026-01-26 14:25:34,191 [wrapper] pilotpid: 1448722
[2026-01-26 09:25:35] 2026-01-26 14:25:34,193 [wrapper] Pilot exit status: 0
[2026-01-26 09:25:35] 2026-01-26 14:25:34,354 [wrapper] pandaids: 6983772079
[2026-01-26 09:25:35] 2026-01-26 14:25:34,494 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-26 09:25:35] 2026-01-26 14:25:34,698 [wrapper] cleanup supervisor_pilot 2091878 1448723
[2026-01-26 09:25:35] 2026-01-26 14:25:34,729 [wrapper] Test setup, not cleaning
[2026-01-26 09:25:35] 2026-01-26 14:25:34,763 [wrapper] apfmon messages muted
[2026-01-26 09:25:35] 2026-01-26 14:25:34,812 [wrapper] ==== wrapper stdout END ====
[2026-01-26 09:25:35] 2026-01-26 14:25:34,846 [wrapper] ==== wrapper stderr END ====
[2026-01-26 09:25:35]  *** Error codes and diagnostics ***
[2026-01-26 09:25:35]     "exeErrorCode": 0,
[2026-01-26 09:25:35]     "exeErrorDiag": "",
[2026-01-26 09:25:35]     "pilotErrorCode": 0,
[2026-01-26 09:25:35]     "pilotErrorDiag": "",
[2026-01-26 09:25:35]  *** Listing of results directory ***
[2026-01-26 09:25:35] total 671208
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas    584422 Jan 25 22:16 pilot3.tar.gz
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas      5111 Jan 25 22:17 queuedata.json
[2026-01-26 09:25:35] -rwx------. 1 boincer umatlas     36322 Jan 25 22:17 runpilot2-wrapper.sh
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas       100 Jan 26 08:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 09:25:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 26 08:09 run_atlas
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas       105 Jan 26 08:09 job.xml
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas 497146286 Jan 26 08:09 EVNT.48318032._000060.pool.root.1
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 08:09 start_atlas.sh
[2026-01-26 09:25:35] drwxrwx--x. 2 boincer umatlas      4096 Jan 26 08:09 shared
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas    597758 Jan 26 08:09 input.tar.gz
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas         0 Jan 26 08:09 boinc_lockfile
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas      2532 Jan 26 08:09 pandaJob.out
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas        57 Jan 26 08:09 setup.sh.local
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas   1002189 Jan 26 08:10 agis_schedconf.cvmfs.json
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas   1516246 Jan 26 08:10 agis_ddmendpoints.agis.ALL.json
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas       431 Jan 26 08:10 workernode_map.json
[2026-01-26 09:25:35] drwx------. 5 boincer umatlas      4096 Jan 26 08:10 pilot3
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas      7183 Jan 26 09:18 init_data.xml
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas 184309343 Jan 26 09:24 HITS.48318034._002324.pool.root.1
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas       530 Jan 26 09:24 boinc_task_state.xml
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas      1039 Jan 26 09:24 memory_monitor_summary.json
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas    364182 Jan 26 09:24 log.48318034._002324.job.log.tgz.1
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas      6343 Jan 26 09:24 heartbeat.json
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas        95 Jan 26 09:25 pilot_heartbeat.json
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas       823 Jan 26 09:25 pilotlog.txt
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas      8192 Jan 26 09:25 boinc_mmap_file
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas        27 Jan 26 09:25 wrapper_checkpoint.txt
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas    599228 Jan 26 09:25 log.48318034._002324.job.log.1
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas       357 Jan 26 09:25 output.list
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas       620 Jan 26 09:25 runtime_log
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas    983040 Jan 26 09:25 result.tar.gz
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas      9343 Jan 26 09:25 runtime_log.err
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas       654 Jan 26 09:25 hJxMDm7HS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHv8KDm2PkYHo.diag
[2026-01-26 09:25:35] -rw-r--r--. 1 boincer umatlas     21548 Jan 26 09:25 stderr.txt
[2026-01-26 09:25:35] HITS file was successfully produced:
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas 184309343 Jan 26 09:24 shared/HITS.pool.root.1
[2026-01-26 09:25:35]  *** Contents of shared directory: ***
[2026-01-26 09:25:35] total 667052
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas 497146286 Jan 26 08:09 ATLAS.root_0
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas     15845 Jan 26 08:09 start_atlas.sh
[2026-01-26 09:25:35] -rw-r--r--. 2 boincer umatlas    597758 Jan 26 08:09 input.tar.gz
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas 184309343 Jan 26 09:24 HITS.pool.root.1
[2026-01-26 09:25:35] -rw-------. 1 boincer umatlas    983040 Jan 26 09:25 result.tar.gz
09:25:36 (1440944): run_atlas exited; CPU time 23326.753194
09:25:36 (1440944): called boinc_finish(0)

</stderr_txt>
]]>

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