Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:30:44 (4206): wrapper (7.7.26015): starting
06:30:44 (4206): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 06:30:44] Arguments: --nthreads 12
[2026-01-26 06:30:44] Threads: 12
[2026-01-26 06:30:44] Checking for CVMFS
[2026-01-26 06:30:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 06:30:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 06:30:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 06:30:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 06:30:44] 2.11.2.0 25590 276145 93644 155545 2 9 11066550 20275200 1 130560 2 130351636 99.947 13390608 25292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 06:30:44] CVMFS is ok
[2026-01-26 06:30:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 06:30:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 06:30:44] Further information can be found at the LHC@home message board.
[2026-01-26 06:30:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 06:30:44] Checking for apptainer binary...
[2026-01-26 06:30:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 06:30:44] Running /usr/bin/apptainer --version
[2026-01-26 06:30:44] apptainer version 1.3.2-1.el7
[2026-01-26 06:30:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 06:30:46] c-205-24.aglt2.org
[2026-01-26 06:30:46] apptainer works
[2026-01-26 06:30:46] Set ATHENA_PROC_NUMBER=12
[2026-01-26 06:30:46] Set ATHENA_CORE_NUMBER=12
[2026-01-26 06:30:46] Starting ATLAS job with PandaID=6984062799
[2026-01-26 06:30:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 07:44:37]  *** The last 200 lines of the pilot log: ***
[2026-01-26 07:44:37]  is_tar=False
[2026-01-26 07:44:37]  lfn=log.48317872._003102.job.log.tgz.1
[2026-01-26 07:44:37]  mtime=0
[2026-01-26 07:44:37]  protocol_id=None
[2026-01-26 07:44:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 07:44:37]  replicas=None
[2026-01-26 07:44:37]  scope=mc23_13p6TeV
[2026-01-26 07:44:37]  status=None
[2026-01-26 07:44:37]  status_code=0
[2026-01-26 07:44:37]  storage_token=
[2026-01-26 07:44:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6984062799/log.48317872._003102.job.log.tgz.1
[2026-01-26 07:44:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/d7/log.48317872._003102.job.log.tgz.1
[2026-01-26 07:44:37]  workdir=None
[2026-01-26 07:44:37] ]
[2026-01-26 07:44:37] 2026-01-26 12:44:01,935 | INFO     | transferring file log.48317872._003102.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6984062799/log.48317872._003102.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-26 07:44:37] 2026-01-26 12:44:01,935 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6984062799/log.48317872._003102.job.log.tgz.1 /tmp/boinchome/slots/0/log.48317872._003102.job
[2026-01-26 07:44:37] 2026-01-26 12:44:01,961 | INFO     | adding to output.list: log.48317872._003102.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/d7/log.48317872._003102.job.log.tg
[2026-01-26 07:44:37] 2026-01-26 12:44:01,962 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 07:44:37] 2026-01-26 12:44:01,962 | INFO     | summary of transferred files:
[2026-01-26 07:44:37] 2026-01-26 12:44:01,962 | INFO     |  -- lfn=log.48317872._003102.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 07:44:37] 2026-01-26 12:44:01,963 | INFO     | stage-out finished correctly
[2026-01-26 07:44:37] 2026-01-26 12:44:02,244 | INFO     | time since job start (4375s) is within the limit (349056.0s)
[2026-01-26 07:44:37] 2026-01-26 12:44:02,754 | INFO     | monitor loop #333: job 0:6984062799 is in state 'finished'
[2026-01-26 07:44:37] 2026-01-26 12:44:02,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 07:44:37] 2026-01-26 12:44:04,126 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 07:44:37] 2026-01-26 12:44:04,250 | INFO     | time since job start (4377s) is within the limit (349056.0s)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,258 | INFO     | monitor loop #334: job 0:6984062799 is in state 'finished'
[2026-01-26 07:44:37] 2026-01-26 12:44:05,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,641 | INFO     | job 6984062799 has state=finished
[2026-01-26 07:44:37] 2026-01-26 12:44:05,641 | INFO     | preparing for final server update for job 6984062799 in state='finished'
[2026-01-26 07:44:37] 2026-01-26 12:44:05,642 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6984062799/jobReport.json
[2026-01-26 07:44:37] 2026-01-26 12:44:05,644 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-26 07:44:37] 2026-01-26 12:44:05,645 | INFO     | this job has now completed (state=finished)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,645 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,645 | INFO     | log transfer has been attempted: DONE
[2026-01-26 07:44:37] 2026-01-26 12:44:05,645 | INFO     | job 6984062799 has finished - writing final server update
[2026-01-26 07:44:37] 2026-01-26 12:44:05,646 | INFO     | total number of processed events: 400 (read)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,648 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6984062799/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,649 | INFO     | extracted standard info from prmon json
[2026-01-26 07:44:37] 2026-01-26 12:44:05,649 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 07:44:37] 2026-01-26 12:44:05,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 07:44:37] 2026-01-26 12:44:05,649 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 07:44:37] 2026-01-26 12:44:05,649 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 07:44:37] 2026-01-26 12:44:05,651 | INFO     | fitting pss+swap vs Time
[2026-01-26 07:44:37] 2026-01-26 12:44:05,651 | INFO     | sum of square deviations: 85136480.0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,651 | INFO     | sum of deviations: 607655037.9999999
[2026-01-26 07:44:37] 2026-01-26 12:44:05,651 | INFO     | mean x: 1769429349.0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,651 | INFO     | mean y: 2964805.184615385
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | intersect: -12626200251.967266
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | chi2: 0.012454841398472664
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | current memory leak: 7.14 B/s (using 65 data points, chi2=0.01)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | ..............................
[2026-01-26 07:44:37] 2026-01-26 12:44:05,652 | INFO     | . Timing measurements:
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . get job = 0 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . initial setup = 7 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . payload setup = 7 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . stage-in = 0 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . payload execution = 4350 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . stage-out = 0 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | . log creation = 0 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,653 | INFO     | ..............................
[2026-01-26 07:44:37] 2026-01-26 12:44:05,747 | INFO     | 
[2026-01-26 07:44:37] 2026-01-26 12:44:05,747 | INFO     | job summary report
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | --------------------------------------------------
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | PanDA job id: 6984062799
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | task id: 48317872
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | errors: (none)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 07:44:37] 2026-01-26 12:44:05,748 | INFO     | pilot state: finished 
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | transexitcode: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | exeerrorcode: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | exeerrordiag: 
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | exitcode: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | exitmsg: OK
[2026-01-26 07:44:37] 2026-01-26 12:44:05,749 | INFO     | cpuconsumptiontime: 46169 s
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | nevents: 400
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | neventsw: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | pid: 12727
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | pgrp: 12727
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | corecount: 12
[2026-01-26 07:44:37] 2026-01-26 12:44:05,750 | INFO     | event service: False
[2026-01-26 07:44:37] 2026-01-26 12:44:05,751 | INFO     | sizes: {0: 2284028, 1: 2284234, 11: 2284262, 4362: 2310308, 4363: 2319306, 4365: 2319362, 4367: 2319684}
[2026-01-26 07:44:37] 2026-01-26 12:44:05,751 | INFO     | --------------------------------------------------
[2026-01-26 07:44:37] 2026-01-26 12:44:05,751 | INFO     | 
[2026-01-26 07:44:37] 2026-01-26 12:44:05,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-26 07:44:37] 2026-01-26 12:44:05,775 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,776 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,776 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,776 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,779 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,779 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 07:44:37] 2026-01-26 12:44:05,779 | INFO     | job 6984062799 has completed (purged errors)
[2026-01-26 07:44:37] 2026-01-26 12:44:05,779 | INFO     | overall cleanup function is called
[2026-01-26 07:44:37] 2026-01-26 12:44:06,788 | INFO     | --- collectZombieJob: --- 10, [12727]
[2026-01-26 07:44:37] 2026-01-26 12:44:06,788 | INFO     | zombie collector waiting for pid 12727
[2026-01-26 07:44:37] 2026-01-26 12:44:06,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 07:44:37] 2026-01-26 12:44:06,788 | INFO     | collected zombie processes
[2026-01-26 07:44:37] 2026-01-26 12:44:06,788 | INFO     | will attempt to kill all subprocesses of pid=12727
[2026-01-26 07:44:37] 2026-01-26 12:44:06,874 | INFO     | process IDs to be killed: [12727] (in reverse order)
[2026-01-26 07:44:37] 2026-01-26 12:44:06,926 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 07:44:37] 2026-01-26 12:44:06,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 07:44:37] 2026-01-26 12:44:06,929 | INFO     | did not find any defunct processes belonging to 12727
[2026-01-26 07:44:37] 2026-01-26 12:44:06,931 | INFO     | did not find any defunct processes belonging to 12727
[2026-01-26 07:44:37] 2026-01-26 12:44:06,931 | INFO     | ready for new job
[2026-01-26 07:44:37] 2026-01-26 12:44:06,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 07:44:37] 2026-01-26 12:44:06,932 | INFO     | **************************************
[2026-01-26 07:44:37] 2026-01-26 12:44:06,933 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 07:44:37] 2026-01-26 12:44:06,933 | INFO     | **************************************
[2026-01-26 07:44:37] 2026-01-26 12:44:06,933 | INFO     | 
[2026-01-26 07:44:37] 2026-01-26 12:44:06,933 | INFO     | architecture information:
[2026-01-26 07:44:37] 2026-01-26 12:44:06,934 | INFO     | executing command: cat /etc/os-release
[2026-01-26 07:44:37] 2026-01-26 12:44:06,956 | INFO     | cat /etc/os-release:
[2026-01-26 07:44:37] NAME="CentOS Linux"
[2026-01-26 07:44:37] VERSION="7 (Core)"
[2026-01-26 07:44:37] ID="centos"
[2026-01-26 07:44:37] ID_LIKE="rhel fedora"
[2026-01-26 07:44:37] VERSION_ID="7"
[2026-01-26 07:44:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 07:44:37] ANSI_COLOR="0;31"
[2026-01-26 07:44:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 07:44:37] HOME_URL="https://www.centos.org/"
[2026-01-26 07:44:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 07:44:37] 
[2026-01-26 07:44:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 07:44:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 07:44:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 07:44:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 07:44:37] 
[2026-01-26 07:44:37] 2026-01-26 12:44:06,957 | INFO     | **************************************
[2026-01-26 07:44:37] 2026-01-26 12:44:07,460 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-26 07:44:37] 2026-01-26 12:44:07,476 | INFO     | sufficient remaining disk space (28802285568 B)
[2026-01-26 07:44:37] 2026-01-26 12:44:07,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 07:44:37] 2026-01-26 12:44:07,477 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 07:44:37] 2026-01-26 12:44:07,477 | INFO     | update_server=False
[2026-01-26 07:44:37] 2026-01-26 12:44:07,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 07:44:37] 2026-01-26 12:44:07,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 07:44:37] 2026-01-26 12:44:07,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 07:44:37] 2026-01-26 12:44:07,719 | INFO     | all data control threads have been joined
[2026-01-26 07:44:37] 2026-01-26 12:44:07,761 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 07:44:37] 2026-01-26 12:44:07,761 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 07:44:37] 2026-01-26 12:44:07,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 07:44:37] 2026-01-26 12:44:07,762 | INFO     | will abort loop
[2026-01-26 07:44:37] 2026-01-26 12:44:08,482 | INFO     | [job] retrieve thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,483 | INFO     | [job] queue monitor thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,553 | INFO     | all job control threads have been joined
[2026-01-26 07:44:37] 2026-01-26 12:44:08,603 | INFO     | [payload] validate_post thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,615 | INFO     | all payload control threads have been joined
[2026-01-26 07:44:37] 2026-01-26 12:44:08,724 | INFO     | [data] control thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,726 | INFO     | [job] validate thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,733 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:08,767 | INFO     | [job] job monitor thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,007 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,132 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,288 | INFO     | [data] copytool_in thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,558 | INFO     | [job] control thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,558 | INFO     | [data] copytool_out thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,616 | INFO     | [payload] failed_post thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,620 | INFO     | [payload] control thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:09,726 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:10,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 07:44:37] 2026-01-26 12:44:13,803 | INFO     | [monitor] cgroup control has ended
[2026-01-26 07:44:37] 2026-01-26 12:44:14,224 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 07:44:37] 2026-01-26 12:44:14,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698567395136)>', '<ExcThread(monitor, started 139698257237760)>']
[2026-01-26 07:44:37] 2026-01-26 12:44:19,777 | INFO     | all workflow threads have been joined
[2026-01-26 07:44:37] 2026-01-26 12:44:19,777 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 07:44:37] 2026-01-26 12:44:19,785 | INFO     | traces error code: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:19,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 07:44:37] 2026-01-26 12:44:36,338 | INFO     | 4386s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-26 07:44:37] 2026-01-26 12:44:37,452 | INFO     | PID=8253 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-26 07:44:37] 2026-01-26 12:44:37,452 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 07:44:37] 2026-01-26 12:44:37,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 07:44:37] 2026-01-26 12:44:37,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 07:44:37] 2026-01-26 12:44:37,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 07:44:37] 2026-01-26 12:44:37,453 | CRITICAL | thread 'MainThread' is not alive
[2026-01-26 07:44:37] 2026-01-26 12:44:37,453 | INFO     | [monitor] control thread has ended
[2026-01-26 07:44:37] 2026-01-26 12:44:37,540 [wrapper] ==== pilot stdout END ====
[2026-01-26 07:44:37] 2026-01-26 12:44:37,543 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 07:44:37] 2026-01-26 12:44:37,547 [wrapper] pilotpid: 8253
[2026-01-26 07:44:37] 2026-01-26 12:44:37,550 [wrapper] Pilot exit status: 0
[2026-01-26 07:44:37] 2026-01-26 12:44:37,566 [wrapper] pandaids: 6984062799
[2026-01-26 07:44:37] 2026-01-26 12:44:37,607 [wrapper] cleanup supervisor_pilot 30940 8254
[2026-01-26 07:44:37] 2026-01-26 12:44:37,611 [wrapper] Test setup, not cleaning
[2026-01-26 07:44:37] 2026-01-26 12:44:37,615 [wrapper] apfmon messages muted
[2026-01-26 07:44:37] 2026-01-26 12:44:37,619 [wrapper] ==== wrapper stdout END ====
[2026-01-26 07:44:37] 2026-01-26 12:44:37,623 [wrapper] ==== wrapper stderr END ====
[2026-01-26 07:44:37]  *** Error codes and diagnostics ***
[2026-01-26 07:44:37]     "exeErrorCode": 0,
[2026-01-26 07:44:37]     "exeErrorDiag": "",
[2026-01-26 07:44:37]     "pilotErrorCode": 0,
[2026-01-26 07:44:37]     "pilotErrorDiag": "",
[2026-01-26 07:44:37]  *** Listing of results directory ***
[2026-01-26 07:44:37] total 667028
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 02:37 pilot3.tar.gz
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 02:38 queuedata.json
[2026-01-26 07:44:37] -rwx------ 1 boincer umatlas     36322 Jan 26 02:39 runpilot2-wrapper.sh
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas       100 Jan 26 06:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 07:44:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 06:30 run_atlas
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas       105 Jan 26 06:30 job.xml
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas 493864090 Jan 26 06:30 EVNT.48317869._000062.pool.root.1
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 06:30 start_atlas.sh
[2026-01-26 07:44:37] drwxrwx--x 2 boincer umatlas      4096 Jan 26 06:30 shared
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas    597749 Jan 26 06:30 input.tar.gz
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas         0 Jan 26 06:30 boinc_lockfile
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas      2515 Jan 26 06:30 pandaJob.out
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas        57 Jan 26 06:30 setup.sh.local
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas   1002189 Jan 26 06:31 agis_schedconf.cvmfs.json
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas   1516246 Jan 26 06:31 agis_ddmendpoints.agis.ALL.json
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas       434 Jan 26 06:31 workernode_map.json
[2026-01-26 07:44:37] drwx------ 5 boincer umatlas      4096 Jan 26 06:31 pilot3
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas      5952 Jan 26 07:36 init_data.xml
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas 183133035 Jan 26 07:43 HITS.48317872._003102.pool.root.1
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas       530 Jan 26 07:43 boinc_task_state.xml
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas      1045 Jan 26 07:43 memory_monitor_summary.json
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas        95 Jan 26 07:43 pilot_heartbeat.json
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas    411901 Jan 26 07:44 log.48317872._003102.job.log.tgz.1
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas      6405 Jan 26 07:44 heartbeat.json
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas        27 Jan 26 07:44 wrapper_checkpoint.txt
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 07:44 boinc_mmap_file
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas       929 Jan 26 07:44 pilotlog.txt
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas    638985 Jan 26 07:44 log.48317872._003102.job.log.1
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas       357 Jan 26 07:44 output.list
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas       620 Jan 26 07:44 runtime_log
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas   1064960 Jan 26 07:44 result.tar.gz
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas      9343 Jan 26 07:44 runtime_log.err
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas       659 Jan 26 07:44 37lLDmqMW48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1J9KDmWjnXym.diag
[2026-01-26 07:44:37] -rw-r--r-- 1 boincer umatlas     21558 Jan 26 07:44 stderr.txt
[2026-01-26 07:44:37] HITS file was successfully produced:
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas 183133035 Jan 26 07:43 shared/HITS.pool.root.1
[2026-01-26 07:44:37]  *** Contents of shared directory: ***
[2026-01-26 07:44:37] total 662784
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas 493864090 Jan 26 06:30 ATLAS.root_0
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 06:30 start_atlas.sh
[2026-01-26 07:44:37] -rw-r--r-- 2 boincer umatlas    597749 Jan 26 06:30 input.tar.gz
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas 183133035 Jan 26 07:43 HITS.pool.root.1
[2026-01-26 07:44:37] -rw------- 1 boincer umatlas   1064960 Jan 26 07:44 result.tar.gz
07:44:39 (4206): run_atlas exited; CPU time 46145.552806
07:44:39 (4206): called boinc_finish(0)

</stderr_txt>
]]>

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