Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:31:09 (14973): wrapper (7.7.26015): starting
02:31:09 (14973): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 02:31:09] Arguments: --nthreads 4
[2026-01-27 02:31:09] Threads: 4
[2026-01-27 02:31:09] Checking for CVMFS
[2026-01-27 02:31:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 02:31:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 02:31:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 02:31:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 02:31:10] 2.9.2.0 3062 71 50660 155568 0 49 19897019 36864001 0 130560 0 34527 99.989 2752 24571 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 02:31:10] CVMFS is ok
[2026-01-27 02:31:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 02:31:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 02:31:10] Further information can be found at the LHC@home message board.
[2026-01-27 02:31:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 02:31:10] Checking for apptainer binary...
[2026-01-27 02:31:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 02:31:10] Running /usr/bin/apptainer --version
[2026-01-27 02:31:10] apptainer version 1.4.1-1.1
[2026-01-27 02:31:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 02:31:10] thA305a
[2026-01-27 02:31:10] apptainer works
[2026-01-27 02:31:10] Set ATHENA_PROC_NUMBER=4
[2026-01-27 02:31:10] Set ATHENA_CORE_NUMBER=4
[2026-01-27 02:31:10] Starting ATLAS job with PandaID=6983602692
[2026-01-27 02:31:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 02:36:29]  *** The last 200 lines of the pilot log: ***
[2026-01-27 02:36:29] 2026-01-27 01:35:40,761 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:40,803 | INFO     | [payload] control thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:40,804 | INFO     | [payload] failed_post thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:40,892 | INFO     | [data] copytool_in thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,061 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,110 | INFO     | [payload] validate_post thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,139 | INFO     | [job] control thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,176 | INFO     | [job] job monitor thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,682 | INFO     | [data] copytool_out thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,704 | INFO     | [data] control thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:41,921 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:42,074 | INFO     | [job] validate thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:42,184 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:42,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 02:36:29] 2026-01-27 01:35:42,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 02:36:29] 2026-01-27 01:35:43,647 | INFO     | [job] queue monitor thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:35:46,675 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 02:36:29] 2026-01-27 01:36:09,501 | INFO     | PID=19089 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 02:36:29] 2026-01-27 01:36:09,501 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 02:36:29] 2026-01-27 01:36:09,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 02:36:29] 2026-01-27 01:36:09,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 02:36:29] 2026-01-27 01:36:22,257 | INFO     | [monitor] cgroup control has ended
[2026-01-27 02:36:29] 2026-01-27 01:36:24,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139880192411456)>', '<ExcThread(monitor, started 139878880761600)>']
[2026-01-27 02:36:29] 2026-01-27 01:36:24,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 02:36:29] 2026-01-27 01:36:24,582 | INFO     | [monitor] control thread has ended
[2026-01-27 02:36:29] 2026-01-27 01:36:29,059 | INFO     | all workflow threads have been joined
[2026-01-27 02:36:29] 2026-01-27 01:36:29,059 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 02:36:29] 2026-01-27 01:36:29,059 | INFO     | traces error code: 0
[2026-01-27 02:36:29] 2026-01-27 01:36:29,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 02:36:29] 2026-01-27 01:36:29,136 [wrapper] ==== pilot stdout END ====
[2026-01-27 02:36:29] 2026-01-27 01:36:29,140 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 02:36:29] 2026-01-27 01:36:29,144 [wrapper] pilotpid: 19089
[2026-01-27 02:36:29] 2026-01-27 01:36:29,148 [wrapper] Pilot exit status: 0
[2026-01-27 02:36:29] 2026-01-27 01:36:29,160 [wrapper] pandaids: 6983602692
[2026-01-27 02:36:29] 2026-01-27 01:36:29,182 [wrapper] cleanup supervisor_pilot   19095 19090
[2026-01-27 02:36:29] 2026-01-27 01:36:29,186 [wrapper] Test setup, not cleaning
[2026-01-27 02:36:29] 2026-01-27 01:36:29,190 [wrapper] apfmon messages muted
[2026-01-27 02:36:29] 2026-01-27 01:36:29,194 [wrapper] ==== wrapper stdout END ====
[2026-01-27 02:36:29] 2026-01-27 01:36:29,198 [wrapper] ==== wrapper stderr END ====
[2026-01-27 02:36:29]  *** Error codes and diagnostics ***
[2026-01-27 02:36:29]     "exeErrorCode": 65,
[2026-01-27 02:36:29]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-01-27 02:36:29]     "pilotErrorCode": 1305,
[2026-01-27 02:36:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-01-27 02:36:29]  *** Listing of results directory ***
[2026-01-27 02:36:29] total 248888
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 02:36:29] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc       100 Jan 27 02:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 02:36:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 02:31 run_atlas
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc       105 Jan 27 02:31 job.xml
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc 250628891 Jan 27 02:31 EVNT.48330019._000009.pool.root.1
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc    597779 Jan 27 02:31 input.tar.gz
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:31 start_atlas.sh
[2026-01-27 02:36:29] drwxrwx--x 2 boinc boinc      4096 Jan 27 02:31 shared
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:31 boinc_setup_complete
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      6213 Jan 27 02:31 init_data.xml
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc         0 Jan 27 02:31 boinc_lockfile
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      2630 Jan 27 02:31 pandaJob.out
[2026-01-27 02:36:29] -rw------- 1 boinc boinc   1006441 Jan 27 02:31 agis_schedconf.cvmfs.json
[2026-01-27 02:36:29] -rw------- 1 boinc boinc   1516246 Jan 27 02:31 agis_ddmendpoints.agis.ALL.json
[2026-01-27 02:36:29] -rw------- 1 boinc boinc       428 Jan 27 02:31 workernode_map.json
[2026-01-27 02:36:29] drwx------ 5 boinc boinc      4096 Jan 27 02:31 pilot3
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc       525 Jan 27 02:33 boinc_task_state.xml
[2026-01-27 02:36:29] -rw------- 1 boinc boinc       994 Jan 27 02:33 memory_monitor_summary.json
[2026-01-27 02:36:29] -rw------- 1 boinc boinc     59130 Jan 27 02:33 log.48330021._000218.job.log.tgz.1
[2026-01-27 02:36:29] -rw------- 1 boinc boinc        95 Jan 27 02:35 pilot_heartbeat.json
[2026-01-27 02:36:29] -rw------- 1 boinc boinc      7996 Jan 27 02:35 heartbeat.json
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      8192 Jan 27 02:36 boinc_mmap_file
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc        23 Jan 27 02:36 wrapper_checkpoint.txt
[2026-01-27 02:36:29] -rw------- 1 boinc boinc      4932 Jan 27 02:36 pilotlog.txt
[2026-01-27 02:36:29] -rw------- 1 boinc boinc     94336 Jan 27 02:36 log.48330021._000218.job.log.1
[2026-01-27 02:36:29] -rw------- 1 boinc boinc       188 Jan 27 02:36 output.list
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc       620 Jan 27 02:36 runtime_log
[2026-01-27 02:36:29] -rw------- 1 boinc boinc    174080 Jan 27 02:36 result.tar.gz
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      8748 Jan 27 02:36 runtime_log.err
[2026-01-27 02:36:29] -rw------- 1 boinc boinc       649 Jan 27 02:36 ppZLDmZNQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2q8KDm1fxFRm.diag
[2026-01-27 02:36:29] -rw-r--r-- 1 boinc boinc      6888 Jan 27 02:36 stderr.txt
[2026-01-27 02:36:29] No HITS result produced
[2026-01-27 02:36:29]  *** Contents of shared directory: ***
[2026-01-27 02:36:29] total 245532
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc 250628891 Jan 27 02:31 ATLAS.root_0
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc    597779 Jan 27 02:31 input.tar.gz
[2026-01-27 02:36:29] -rw-r--r-- 2 boinc boinc     15845 Jan 27 02:31 start_atlas.sh
[2026-01-27 02:36:29] -rw------- 1 boinc boinc    174080 Jan 27 02:36 result.tar.gz
02:36:30 (14973): run_atlas exited; CPU time 66.283722
02:36:30 (14973): called boinc_finish(0)

</stderr_txt>
]]>

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