Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:38:08 (23271): wrapper (7.7.26015): starting
17:38:08 (23271): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 17:38:08] Arguments: --nthreads 4
[2026-01-27 17:38:08] Threads: 4
[2026-01-27 17:38:08] Checking for CVMFS
[2026-01-27 17:38:08] No cvmfs_config command found, will try listing directly
[2026-01-27 17:38:08] CVMFS is ok
[2026-01-27 17:38:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 17:38:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 17:38:08] Further information can be found at the LHC@home message board.
[2026-01-27 17:38:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 17:38:08] Checking for apptainer binary...
[2026-01-27 17:38:08] which: no apptainer in ((null))
[2026-01-27 17:38:08] apptainer is not installed, using version from CVMFS
[2026-01-27 17:38:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 17:38:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2026-01-27 17:38:08] apptainer works
[2026-01-27 17:38:08] Set ATHENA_PROC_NUMBER=4
[2026-01-27 17:38:08] Set ATHENA_CORE_NUMBER=4
[2026-01-27 17:38:08] Starting ATLAS job with PandaID=6983771239
[2026-01-27 17:38:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 21:08:24]  *** The last 200 lines of the pilot log: ***
[2026-01-27 21:08:24] 2026-01-27 19:59:58,546 | INFO     | reading metadata from: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6983771239/jobReport.json
[2026-01-27 21:08:24] 2026-01-27 19:59:58,549 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot64/slots/0/workernode_map.json
[2026-01-27 21:08:24] 2026-01-27 19:59:58,550 | INFO     | this job has now completed (state=finished)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,550 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,550 | INFO     | log transfer has been attempted: DONE
[2026-01-27 21:08:24] 2026-01-27 19:59:58,550 | INFO     | job 6983771239 has finished - writing final server update
[2026-01-27 21:08:24] 2026-01-27 19:59:58,550 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_676262/.job.ad'
[2026-01-27 21:08:24] 2026-01-27 19:59:58,551 | INFO     | total number of processed events: 400 (read)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,562 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6983771239/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,563 | INFO     | extracted standard info from prmon json
[2026-01-27 21:08:24] 2026-01-27 19:59:58,563 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 21:08:24] 2026-01-27 19:59:58,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 21:08:24] 2026-01-27 19:59:58,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 21:08:24] 2026-01-27 19:59:58,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 21:08:24] 2026-01-27 19:59:58,567 | INFO     | fitting pss+swap vs Time
[2026-01-27 21:08:24] 2026-01-27 19:59:58,568 | INFO     | sum of square deviations: 2406926989.5
[2026-01-27 21:08:24] 2026-01-27 19:59:58,569 | INFO     | sum of deviations: -283588694.9999989
[2026-01-27 21:08:24] 2026-01-27 19:59:58,569 | INFO     | mean x: 1769537935.5
[2026-01-27 21:08:24] 2026-01-27 19:59:58,569 | INFO     | mean y: 2355507.898989899
[2026-01-27 21:08:24] 2026-01-27 19:59:58,569 | INFO     | intersect: 210845817.7715309
[2026-01-27 21:08:24] 2026-01-27 19:59:58,570 | INFO     | chi2: 1.3010968165979906
[2026-01-27 21:08:24] 2026-01-27 19:59:58,570 | INFO     | sum of square deviations: 2229146912.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,571 | INFO     | sum of deviations: -408942108.9999951
[2026-01-27 21:08:24] 2026-01-27 19:59:58,571 | INFO     | mean x: 1769537783.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,571 | INFO     | mean y: 2355400.3316062177
[2026-01-27 21:08:24] 2026-01-27 19:59:58,572 | INFO     | intersect: 326981161.4421398
[2026-01-27 21:08:24] 2026-01-27 19:59:58,572 | INFO     | chi2: 1.3007970269062785
[2026-01-27 21:08:24] 2026-01-27 19:59:58,572 | INFO     | current chi2=1.3007970269062785 (change=0.02304130544996172 %)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,572 | INFO     | right removable region: 192
[2026-01-27 21:08:24] 2026-01-27 19:59:58,572 | INFO     | sum of square deviations: 2229146912.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,573 | INFO     | sum of deviations: -20120454293.000004
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | mean x: 1769538088.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | mean y: 2372209.4922279795
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | intersect: 15974361326.7921
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | chi2: 0.08616159864129591
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | current chi2=0.08616159864129591 (change=93.37777192733552 %)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,574 | INFO     | sum of square deviations: 2060343747.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | sum of deviations: -17751892795.999992
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | mean x: 1769538240.5
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | mean y: 2370070.6170212766
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | intersect: 15248686705.652996
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | chi2: 0.08055407855886744
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | current chi2=0.08055407855886744 (change=6.50814303686895 %)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,576 | INFO     | left removable region: 20
[2026-01-27 21:08:24] 2026-01-27 19:59:58,577 | INFO     | sum of square deviations: 1577789583.0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | sum of deviations: -8993791108.5
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | mean x: 1769538362.5
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | mean y: 2361589.6104651163
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | intersect: 10089168196.953968
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | chi2: 0.05625457740560742
[2026-01-27 21:08:24] 2026-01-27 19:59:58,578 | INFO     | current memory leak: -5.70 B/s (using 172 data points, chi2=0.06)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | could have reported an average CPU frequency of 2688 MHz (10 samples)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | ..............................
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . Timing measurements:
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . get job = 0 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . initial setup = 5 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . payload setup = 5 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . stage-in = 0 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,579 | INFO     | . payload execution = 12068 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,580 | INFO     | . stage-out = 1 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,580 | INFO     | . log creation = 0 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,580 | INFO     | ..............................
[2026-01-27 21:08:24] 2026-01-27 19:59:58,795 | INFO     | 
[2026-01-27 21:08:24] 2026-01-27 19:59:58,795 | INFO     | job summary report
[2026-01-27 21:08:24] 2026-01-27 19:59:58,795 | INFO     | --------------------------------------------------
[2026-01-27 21:08:24] 2026-01-27 19:59:58,795 | INFO     | PanDA job id: 6983771239
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | task id: 48329373
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | errors: (none)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | pilot state: finished 
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | transexitcode: 0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | exeerrorcode: 0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | exeerrordiag: 
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | exitcode: 0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | exitmsg: OK
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | cpuconsumptiontime: 46317 s
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | nevents: 400
[2026-01-27 21:08:24] 2026-01-27 19:59:58,796 | INFO     | neventsw: 0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | pid: 32100
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | pgrp: 32100
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | corecount: 4
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | event service: False
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | sizes: {0: 2283931, 1: 2284392, 11: 2284392, 12078: 2313980, 12079: 2323000, 12080: 2323056, 12083: 2323378}
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | --------------------------------------------------
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | 
[2026-01-27 21:08:24] 2026-01-27 19:59:58,797 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,822 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,823 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 21:08:24] 2026-01-27 19:59:58,823 | INFO     | job 6983771239 has completed (purged errors)
[2026-01-27 21:08:24] 2026-01-27 19:59:58,823 | INFO     | overall cleanup function is called
[2026-01-27 21:08:24] 2026-01-27 19:59:59,829 | INFO     | --- collectZombieJob: --- 10, [32100]
[2026-01-27 21:08:24] 2026-01-27 19:59:59,830 | INFO     | zombie collector waiting for pid 32100
[2026-01-27 21:08:24] 2026-01-27 19:59:59,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 21:08:24] 2026-01-27 19:59:59,830 | INFO     | collected zombie processes
[2026-01-27 21:08:24] 2026-01-27 19:59:59,830 | INFO     | will attempt to kill all subprocesses of pid=32100
[2026-01-27 21:08:24] 2026-01-27 20:00:00,242 | INFO     | process IDs to be killed: [32100] (in reverse order)
[2026-01-27 21:08:24] 2026-01-27 20:00:00,365 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 21:08:24] 2026-01-27 20:00:00,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 21:08:24] 2026-01-27 20:00:00,380 | INFO     | did not find any defunct processes belonging to 32100
[2026-01-27 21:08:24] 2026-01-27 20:00:00,393 | INFO     | did not find any defunct processes belonging to 32100
[2026-01-27 21:08:24] 2026-01-27 20:00:00,393 | INFO     | ready for new job
[2026-01-27 21:08:24] 2026-01-27 20:00:00,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 21:08:24] 2026-01-27 20:00:00,396 | INFO     | **************************************
[2026-01-27 21:08:24] 2026-01-27 20:00:00,396 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 21:08:24] 2026-01-27 20:00:00,396 | INFO     | **************************************
[2026-01-27 21:08:24] 2026-01-27 20:00:00,396 | INFO     | 
[2026-01-27 21:08:24] 2026-01-27 20:00:00,400 | INFO     | architecture information:
[2026-01-27 21:08:24] 2026-01-27 20:00:00,400 | INFO     | executing command: cat /etc/os-release
[2026-01-27 21:08:24] 2026-01-27 20:00:00,418 | INFO     | cat /etc/os-release:
[2026-01-27 21:08:24] NAME="CentOS Linux"
[2026-01-27 21:08:24] VERSION="7 (Core)"
[2026-01-27 21:08:24] ID="centos"
[2026-01-27 21:08:24] ID_LIKE="rhel fedora"
[2026-01-27 21:08:24] VERSION_ID="7"
[2026-01-27 21:08:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 21:08:24] ANSI_COLOR="0;31"
[2026-01-27 21:08:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 21:08:24] HOME_URL="https://www.centos.org/"
[2026-01-27 21:08:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 21:08:24] 
[2026-01-27 21:08:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 21:08:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 21:08:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 21:08:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 21:08:24] 
[2026-01-27 21:08:24] 2026-01-27 20:00:00,418 | INFO     | **************************************
[2026-01-27 21:08:24] 2026-01-27 20:00:00,921 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2026-01-27 21:08:24] 2026-01-27 20:00:00,937 | INFO     | sufficient remaining disk space (663656333312 B)
[2026-01-27 21:08:24] 2026-01-27 20:00:00,938 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 21:08:24] 2026-01-27 20:00:00,938 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 21:08:24] 2026-01-27 20:00:00,938 | INFO     | update_server=False
[2026-01-27 21:08:24] 2026-01-27 20:00:00,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 21:08:24] 2026-01-27 20:00:00,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 21:08:24] 2026-01-27 20:00:01,125 | INFO     | all data control threads have been joined
[2026-01-27 21:08:24] 2026-01-27 20:00:01,202 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 21:08:24] 2026-01-27 20:00:01,203 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 21:08:24] 2026-01-27 20:00:01,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:08:24] 2026-01-27 20:00:01,203 | INFO     | will abort loop
[2026-01-27 21:08:24] 2026-01-27 20:00:01,921 | INFO     | all payload control threads have been joined
[2026-01-27 21:08:24] 2026-01-27 20:00:01,944 | INFO     | [job] retrieve thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:01,962 | INFO     | [data] copytool_in thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,119 | INFO     | all job control threads have been joined
[2026-01-27 21:08:24] 2026-01-27 20:00:02,130 | INFO     | [data] control thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,161 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 21:08:24] 2026-01-27 20:00:02,207 | INFO     | [job] job monitor thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,723 | INFO     | [payload] failed_post thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,780 | INFO     | [payload] validate_post thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,836 | INFO     | [job] validate thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,926 | INFO     | [payload] control thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:02,943 | INFO     | [data] copytool_out thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:03,125 | INFO     | [job] control thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:03,174 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:03,201 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:03,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 21:08:24] 2026-01-27 20:00:04,685 | INFO     | [job] queue monitor thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:06,193 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:11,359 | INFO     | job.realtimelogging is not enabled
[2026-01-27 21:08:24] 2026-01-27 20:00:12,364 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 21:08:24] 2026-01-27 20:00:30,603 | INFO     | PID=27376 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 21:08:24] 2026-01-27 20:00:30,603 | INFO     | .. there are 4 such processes running
[2026-01-27 21:08:24] 2026-01-27 20:00:30,603 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 21:08:24] 2026-01-27 20:00:30,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 21:08:24] 2026-01-27 20:00:30,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 21:08:24] 2026-01-27 20:00:44,167 | INFO     | [monitor] cgroup control has ended
[2026-01-27 21:08:24] 2026-01-27 20:00:45,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22564396947264)>', '<ExcThread(monitor, started 22564159371008)>']
[2026-01-27 21:08:24] 2026-01-27 20:00:45,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 21:08:24] 2026-01-27 20:00:45,665 | INFO     | [monitor] control thread has ended
[2026-01-27 21:08:24] 2026-01-27 20:00:50,522 | INFO     | all workflow threads have been joined
[2026-01-27 21:08:24] 2026-01-27 20:00:50,522 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 21:08:24] 2026-01-27 20:00:50,522 | INFO     | traces error code: 0
[2026-01-27 21:08:24] 2026-01-27 20:00:50,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 21:08:24] 2026-01-27 20:00:50,692 [wrapper] ==== pilot stdout END ====
[2026-01-27 21:08:24] 2026-01-27 20:00:50,695 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 21:08:24] 2026-01-27 20:00:50,697 [wrapper] pilotpid: 27376
[2026-01-27 21:08:24] 2026-01-27 20:00:50,700 [wrapper] Pilot exit status: 0
[2026-01-27 21:08:24] 2026-01-27 20:00:50,711 [wrapper] pandaids: 6983771239
[2026-01-27 21:08:24] 2026-01-27 20:00:50,790 [wrapper] cleanup supervisor_pilot  166235 27377
[2026-01-27 21:08:24] 2026-01-27 20:00:50,794 [wrapper] Test setup, not cleaning
[2026-01-27 21:08:24] 2026-01-27 20:00:50,797 [wrapper] apfmon messages muted
[2026-01-27 21:08:24] 2026-01-27 20:00:50,800 [wrapper] ==== wrapper stdout END ====
[2026-01-27 21:08:24] 2026-01-27 20:00:50,803 [wrapper] ==== wrapper stderr END ====
[2026-01-27 21:08:24]  *** Error codes and diagnostics ***
[2026-01-27 21:08:24]     "exeErrorCode": 0,
[2026-01-27 21:08:24]     "exeErrorDiag": "",
[2026-01-27 21:08:24]     "pilotErrorCode": 0,
[2026-01-27 21:08:24]     "pilotErrorDiag": "",
[2026-01-27 21:08:24]  *** Listing of results directory ***
[2026-01-27 21:08:24] total 445940
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 21:08:24] -rwx------ 1 boinc boinc     36322 Jan 26 02:15 runpilot2-wrapper.sh
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:18 queuedata.json
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc       100 Jan 27 17:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 21:08:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 17:38 run_atlas
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc       105 Jan 27 17:38 job.xml
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc      6638 Jan 27 17:38 init_data.xml
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc 267234544 Jan 27 17:38 EVNT.48329371._000003.pool.root.1
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:38 start_atlas.sh
[2026-01-27 21:08:24] drwxrwx--x 2 boinc boinc      4096 Jan 27 17:38 shared
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc    597779 Jan 27 17:38 input.tar.gz
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc         0 Jan 27 17:38 boinc_lockfile
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc      2605 Jan 27 17:38 pandaJob.out
[2026-01-27 21:08:24] -rw------- 1 boinc boinc   1005178 Jan 27 17:38 agis_schedconf.cvmfs.json
[2026-01-27 21:08:24] -rw------- 1 boinc boinc       451 Jan 27 17:38 workernode_map.json
[2026-01-27 21:08:24] drwx------ 5 boinc boinc      4096 Jan 27 17:38 pilot3
[2026-01-27 21:08:24] -rw------- 1 boinc boinc 181280787 Jan 27 20:59 HITS.48329373._000075.pool.root.1
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc       528 Jan 27 20:59 boinc_task_state.xml
[2026-01-27 21:08:24] -rw------- 1 boinc boinc        95 Jan 27 20:59 pilot_heartbeat.json
[2026-01-27 21:08:24] -rw------- 1 boinc boinc      1035 Jan 27 20:59 memory_monitor_summary.json
[2026-01-27 21:08:24] -rw------- 1 boinc boinc   1516246 Jan 27 20:59 agis_ddmendpoints.agis.ALL.json
[2026-01-27 21:08:24] -rw------- 1 boinc boinc    389370 Jan 27 20:59 log.48329373._000075.job.log.tgz.1
[2026-01-27 21:08:24] -rw------- 1 boinc boinc      6396 Jan 27 20:59 heartbeat.json
[2026-01-27 21:08:24] -rw------- 1 boinc boinc      5085 Jan 27 21:00 pilotlog.txt
[2026-01-27 21:08:24] -rw------- 1 boinc boinc   1706362 Jan 27 21:00 log.48329373._000075.job.log.1
[2026-01-27 21:08:24] -rw------- 1 boinc boinc       357 Jan 27 21:00 output.list
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc       620 Jan 27 21:00 runtime_log
[2026-01-27 21:08:24] -rw------- 1 boinc boinc   2109440 Jan 27 21:00 result.tar.gz
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc      9205 Jan 27 21:00 runtime_log.err
[2026-01-27 21:08:24] -rw------- 1 boinc boinc       667 Jan 27 21:00 jEpLDmENQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJH2KDmKmIc9n.diag
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc        26 Jan 27 21:08 wrapper_checkpoint.txt
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc      8192 Jan 27 21:08 boinc_mmap_file
[2026-01-27 21:08:24] -rw-r--r-- 1 boinc boinc     21093 Jan 27 21:08 stderr.txt
[2026-01-27 21:08:24] HITS file was successfully produced:
[2026-01-27 21:08:24] -rw------- 1 boinc boinc 181280787 Jan 27 20:59 shared/HITS.pool.root.1
[2026-01-27 21:08:24]  *** Contents of shared directory: ***
[2026-01-27 21:08:24] total 440672
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc 267234544 Jan 27 17:38 ATLAS.root_0
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc     15845 Jan 27 17:38 start_atlas.sh
[2026-01-27 21:08:24] -rw-r--r-- 2 boinc boinc    597779 Jan 27 17:38 input.tar.gz
[2026-01-27 21:08:24] -rw------- 1 boinc boinc 181280787 Jan 27 20:59 HITS.pool.root.1
[2026-01-27 21:08:24] -rw------- 1 boinc boinc   2109440 Jan 27 21:00 result.tar.gz
21:08:26 (23271): run_atlas exited; CPU time 46841.742820
21:08:26 (23271): called boinc_finish(0)

</stderr_txt>
]]>

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