Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:28:46 (2263421): wrapper (7.7.26015): starting
05:28:46 (2263421): wrapper: running run_atlas (--nthreads 2)
[2026-01-27 05:28:46] Arguments: --nthreads 2
[2026-01-27 05:28:46] Threads: 2
[2026-01-27 05:28:46] Checking for CVMFS
[2026-01-27 05:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 05:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 05:28:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 05:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 05:28:46] 2.9.2.0 1326838 9113 61872 155573 1 50 25422594 36864000 0 130560 0 2795911 99.980 294736 4174 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 05:28:46] CVMFS is ok
[2026-01-27 05:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 05:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 05:28:46] Further information can be found at the LHC@home message board.
[2026-01-27 05:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 05:28:46] Checking for apptainer binary...
[2026-01-27 05:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 05:28:46] Running /usr/bin/apptainer --version
[2026-01-27 05:28:46] apptainer version 1.4.1-1.1
[2026-01-27 05:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 05:28:46] thA334a
[2026-01-27 05:28:46] apptainer works
[2026-01-27 05:28:46] Set ATHENA_PROC_NUMBER=2
[2026-01-27 05:28:46] Set ATHENA_CORE_NUMBER=2
[2026-01-27 05:28:46] Starting ATLAS job with PandaID=6980373726
[2026-01-27 05:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:23:21]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | job 6980373726 has completed (purged errors)
[2026-01-27 07:23:21] 2026-01-27 06:22:33,878 | INFO     | overall cleanup function is called
[2026-01-27 07:23:21] 2026-01-27 06:22:33,884 | INFO     | PID=2267447 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:23:21] 2026-01-27 06:22:34,885 | INFO     | --- collectZombieJob: --- 10, [2271854]
[2026-01-27 07:23:21] 2026-01-27 06:22:34,885 | INFO     | zombie collector waiting for pid 2271854
[2026-01-27 07:23:21] 2026-01-27 06:22:34,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:23:21] 2026-01-27 06:22:34,886 | INFO     | collected zombie processes
[2026-01-27 07:23:21] 2026-01-27 06:22:34,886 | INFO     | will attempt to kill all subprocesses of pid=2271854
[2026-01-27 07:23:21] 2026-01-27 06:22:34,919 | INFO     | process IDs to be killed: [2271854] (in reverse order)
[2026-01-27 07:23:21] 2026-01-27 06:22:34,939 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:23:21] 2026-01-27 06:22:34,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:23:21] 2026-01-27 06:22:34,940 | INFO     | did not find any defunct processes belonging to 2271854
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | did not find any defunct processes belonging to 2271854
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | ready for new job
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | **************************************
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:23:21] 2026-01-27 06:22:34,941 | INFO     | **************************************
[2026-01-27 07:23:21] 2026-01-27 06:22:34,942 | INFO     | 
[2026-01-27 07:23:21] 2026-01-27 06:22:34,942 | INFO     | architecture information:
[2026-01-27 07:23:21] 2026-01-27 06:22:34,942 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:23:21] 2026-01-27 06:22:34,950 | INFO     | cat /etc/os-release:
[2026-01-27 07:23:21] NAME="CentOS Linux"
[2026-01-27 07:23:21] VERSION="7 (Core)"
[2026-01-27 07:23:21] ID="centos"
[2026-01-27 07:23:21] ID_LIKE="rhel fedora"
[2026-01-27 07:23:21] VERSION_ID="7"
[2026-01-27 07:23:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:23:21] ANSI_COLOR="0;31"
[2026-01-27 07:23:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:23:21] HOME_URL="https://www.centos.org/"
[2026-01-27 07:23:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:23:21] 
[2026-01-27 07:23:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:23:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:23:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:23:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:23:21] 
[2026-01-27 07:23:21] 2026-01-27 06:22:34,950 | INFO     | **************************************
[2026-01-27 07:23:21] 2026-01-27 06:22:35,454 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | INFO     | sufficient remaining disk space (496790142976 B)
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | INFO     | update_server=False
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:23:21] 2026-01-27 06:22:35,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:23:21] 2026-01-27 06:22:35,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:23:21] 2026-01-27 06:22:35,714 | INFO     | all data control threads have been joined
[2026-01-27 07:23:21] 2026-01-27 06:22:35,732 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 07:23:21] 2026-01-27 06:22:35,732 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 07:23:21] 2026-01-27 06:22:35,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:23:21] 2026-01-27 06:22:35,733 | INFO     | will abort loop
[2026-01-27 07:23:21] 2026-01-27 06:22:35,929 | INFO     | all job control threads have been joined
[2026-01-27 07:23:21] 2026-01-27 06:22:36,129 | INFO     | all payload control threads have been joined
[2026-01-27 07:23:21] 2026-01-27 06:22:36,472 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,473 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,720 | INFO     | [data] control thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,739 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,900 | INFO     | [job] validate thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,935 | INFO     | [job] control thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:36,936 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,084 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,123 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,134 | INFO     | [payload] control thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,159 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,494 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,644 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:37,727 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:38,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:23:21] 2026-01-27 06:22:42,545 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:22:45,775 | INFO     | job.realtimelogging is not enabled
[2026-01-27 07:23:21] 2026-01-27 06:22:46,781 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:23:21] 2026-01-27 06:23:05,989 | INFO     | PID=2267447 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:23:21] 2026-01-27 06:23:05,990 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:23:21] 2026-01-27 06:23:05,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:23:21] 2026-01-27 06:23:05,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:23:21] 2026-01-27 06:23:15,379 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:23:21] 2026-01-27 06:23:15,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713399318336)>', '<ExcThread(monitor, started 139712383670016)>']
[2026-01-27 07:23:21] 2026-01-27 06:23:16,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:23:21] 2026-01-27 06:23:16,040 | INFO     | [monitor] control thread has ended
[2026-01-27 07:23:21] 2026-01-27 06:23:20,644 | INFO     | all workflow threads have been joined
[2026-01-27 07:23:21] 2026-01-27 06:23:20,645 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:23:21] 2026-01-27 06:23:20,646 | INFO     | traces error code: 0
[2026-01-27 07:23:21] 2026-01-27 06:23:20,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:23:21] 2026-01-27 06:23:20,688 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:23:21] 2026-01-27 06:23:20,691 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:23:21] 2026-01-27 06:23:20,693 [wrapper] pilotpid: 2267447
[2026-01-27 07:23:21] 2026-01-27 06:23:20,696 [wrapper] Pilot exit status: 0
[2026-01-27 07:23:21] 2026-01-27 06:23:20,701 [wrapper] pandaids: 6980373726
[2026-01-27 07:23:21] 2026-01-27 06:23:20,713 [wrapper] cleanup supervisor_pilot 2276861 2267448
[2026-01-27 07:23:21] 2026-01-27 06:23:20,715 [wrapper] Test setup, not cleaning
[2026-01-27 07:23:21] 2026-01-27 06:23:20,717 [wrapper] apfmon messages muted
[2026-01-27 07:23:21] 2026-01-27 06:23:20,719 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:23:21] 2026-01-27 06:23:20,721 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:23:21]  *** Error codes and diagnostics ***
[2026-01-27 07:23:21]     "exeErrorCode": 0,
[2026-01-27 07:23:21]     "exeErrorDiag": "",
[2026-01-27 07:23:21]     "pilotErrorCode": 0,
[2026-01-27 07:23:21]     "pilotErrorDiag": "",
[2026-01-27 07:23:21]  *** Listing of results directory ***
[2026-01-27 07:23:21] total 662276
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc    584422 Jan 24 05:10 pilot3.tar.gz
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc      5111 Jan 24 05:10 queuedata.json
[2026-01-27 07:23:21] -rwx------ 1 boinc boinc     36322 Jan 24 05:11 runpilot2-wrapper.sh
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc       100 Jan 27 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:23:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 05:28 run_atlas
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc       105 Jan 27 05:28 job.xml
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc 494981762 Jan 27 05:28 EVNT.48310665._000182.pool.root.1
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc    597754 Jan 27 05:28 input.tar.gz
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 05:28 start_atlas.sh
[2026-01-27 07:23:21] drwxrwx--x 2 boinc boinc      4096 Jan 27 05:28 shared
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 05:28 boinc_setup_complete
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc      6207 Jan 27 05:28 init_data.xml
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 05:28 boinc_lockfile
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc      2517 Jan 27 05:28 pandaJob.out
[2026-01-27 07:23:21] -rw------- 1 boinc boinc   1006441 Jan 27 05:28 agis_schedconf.cvmfs.json
[2026-01-27 07:23:21] -rw------- 1 boinc boinc   1516246 Jan 27 05:28 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:23:21] -rw------- 1 boinc boinc       426 Jan 27 05:29 workernode_map.json
[2026-01-27 07:23:21] drwx------ 5 boinc boinc      4096 Jan 27 05:29 pilot3
[2026-01-27 07:23:21] -rw------- 1 boinc boinc 176793324 Jan 27 07:22 HITS.48310670._009051.pool.root.1
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc       530 Jan 27 07:22 boinc_task_state.xml
[2026-01-27 07:23:21] -rw------- 1 boinc boinc      1025 Jan 27 07:22 memory_monitor_summary.json
[2026-01-27 07:23:21] -rw------- 1 boinc boinc    246602 Jan 27 07:22 log.48310670._009051.job.log.tgz.1
[2026-01-27 07:23:21] -rw------- 1 boinc boinc        95 Jan 27 07:22 pilot_heartbeat.json
[2026-01-27 07:23:21] -rw------- 1 boinc boinc      6293 Jan 27 07:22 heartbeat.json
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc        27 Jan 27 07:22 wrapper_checkpoint.txt
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc      8192 Jan 27 07:22 boinc_mmap_file
[2026-01-27 07:23:21] -rw------- 1 boinc boinc      5006 Jan 27 07:23 pilotlog.txt
[2026-01-27 07:23:21] -rw------- 1 boinc boinc    981883 Jan 27 07:23 log.48310670._009051.job.log.1
[2026-01-27 07:23:21] -rw------- 1 boinc boinc       357 Jan 27 07:23 output.list
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc       620 Jan 27 07:23 runtime_log
[2026-01-27 07:23:21] -rw------- 1 boinc boinc   1249280 Jan 27 07:23 result.tar.gz
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc      8901 Jan 27 07:23 runtime_log.err
[2026-01-27 07:23:21] -rw------- 1 boinc boinc       658 Jan 27 07:23 Zq6KDmNAk38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMfxKDmIcZHvm.diag
[2026-01-27 07:23:21] -rw-r--r-- 1 boinc boinc     12579 Jan 27 07:23 stderr.txt
[2026-01-27 07:23:21] HITS file was successfully produced:
[2026-01-27 07:23:21] -rw------- 1 boinc boinc 176793324 Jan 27 07:22 shared/HITS.pool.root.1
[2026-01-27 07:23:21]  *** Contents of shared directory: ***
[2026-01-27 07:23:21] total 657864
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc 494981762 Jan 27 05:28 ATLAS.root_0
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc    597754 Jan 27 05:28 input.tar.gz
[2026-01-27 07:23:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 05:28 start_atlas.sh
[2026-01-27 07:23:21] -rw------- 1 boinc boinc 176793324 Jan 27 07:22 HITS.pool.root.1
[2026-01-27 07:23:21] -rw------- 1 boinc boinc   1249280 Jan 27 07:23 result.tar.gz
07:23:22 (2263421): run_atlas exited; CPU time 13216.234371
07:23:22 (2263421): called boinc_finish(0)

</stderr_txt>
]]>

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