Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:40:52 (2239818): wrapper (7.7.26015): starting
22:40:52 (2239818): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 22:40:52] Arguments: --nthreads 3
[2026-01-26 22:40:52] Threads: 3
[2026-01-26 22:40:52] Checking for CVMFS
[2026-01-26 22:40:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 22:40:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 22:40:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 22:40:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 22:40:53] 2.9.2.0 856503 8978 94452 155562 2 50 19189225 36864000 0 130560 0 4040818 99.987 292296 5775 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 22:40:53] CVMFS is ok
[2026-01-26 22:40:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 22:40:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 22:40:53] Further information can be found at the LHC@home message board.
[2026-01-26 22:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 22:40:53] Checking for apptainer binary...
[2026-01-26 22:40:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 22:40:53] Running /usr/bin/apptainer --version
[2026-01-26 22:40:53] apptainer version 1.4.1-1.1
[2026-01-26 22:40:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 22:40:53] thA331b
[2026-01-26 22:40:53] apptainer works
[2026-01-26 22:40:53] Set ATHENA_PROC_NUMBER=3
[2026-01-26 22:40:53] Set ATHENA_CORE_NUMBER=3
[2026-01-26 22:40:53] Starting ATLAS job with PandaID=6983607948
[2026-01-26 22:40:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 00:18:20]  *** The last 200 lines of the pilot log: ***
[2026-01-27 00:18:20] 2026-01-26 23:17:50,065 | INFO     | --- collectZombieJob: --- 10, [2248285]
[2026-01-27 00:18:20] 2026-01-26 23:17:50,065 | INFO     | zombie collector waiting for pid 2248285
[2026-01-27 00:18:20] 2026-01-26 23:17:50,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 00:18:20] 2026-01-26 23:17:50,065 | INFO     | collected zombie processes
[2026-01-27 00:18:20] 2026-01-26 23:17:50,065 | INFO     | will attempt to kill all subprocesses of pid=2248285
[2026-01-27 00:18:20] 2026-01-26 23:17:50,107 | INFO     | process IDs to be killed: [2248285] (in reverse order)
[2026-01-27 00:18:20] 2026-01-26 23:17:50,131 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 00:18:20] 2026-01-26 23:17:50,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 00:18:20] 2026-01-26 23:17:50,132 | INFO     | did not find any defunct processes belonging to 2248285
[2026-01-27 00:18:20] 2026-01-26 23:17:50,133 | INFO     | did not find any defunct processes belonging to 2248285
[2026-01-27 00:18:20] 2026-01-26 23:17:50,133 | INFO     | ready for new job
[2026-01-27 00:18:20] 2026-01-26 23:17:50,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | **************************************
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | **************************************
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | 
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | architecture information:
[2026-01-27 00:18:20] 2026-01-26 23:17:50,134 | INFO     | executing command: cat /etc/os-release
[2026-01-27 00:18:20] 2026-01-26 23:17:50,143 | INFO     | cat /etc/os-release:
[2026-01-27 00:18:20] NAME="CentOS Linux"
[2026-01-27 00:18:20] VERSION="7 (Core)"
[2026-01-27 00:18:20] ID="centos"
[2026-01-27 00:18:20] ID_LIKE="rhel fedora"
[2026-01-27 00:18:20] VERSION_ID="7"
[2026-01-27 00:18:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 00:18:20] ANSI_COLOR="0;31"
[2026-01-27 00:18:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 00:18:20] HOME_URL="https://www.centos.org/"
[2026-01-27 00:18:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 00:18:20] 
[2026-01-27 00:18:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 00:18:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 00:18:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 00:18:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 00:18:20] 
[2026-01-27 00:18:20] 2026-01-26 23:17:50,143 | INFO     | **************************************
[2026-01-27 00:18:20] 2026-01-26 23:17:50,646 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | INFO     | sufficient remaining disk space (238761803776 B)
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | INFO     | update_server=False
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 00:18:20] 2026-01-26 23:17:50,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 00:18:20] 2026-01-26 23:17:50,714 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 00:18:20] 2026-01-26 23:17:50,716 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 00:18:20] 2026-01-26 23:17:50,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 00:18:20] 2026-01-26 23:17:50,716 | INFO     | will abort loop
[2026-01-27 00:18:20] 2026-01-26 23:17:50,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 00:18:20] 2026-01-26 23:17:50,946 | INFO     | all payload control threads have been joined
[2026-01-27 00:18:20] 2026-01-26 23:17:51,094 | INFO     | all data control threads have been joined
[2026-01-27 00:18:20] 2026-01-26 23:17:51,664 | INFO     | [job] retrieve thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:51,664 | INFO     | [job] queue monitor thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:51,721 | INFO     | [job] job monitor thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:51,910 | INFO     | all job control threads have been joined
[2026-01-27 00:18:20] 2026-01-26 23:17:51,952 | INFO     | [payload] control thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:51,968 | INFO     | [payload] validate_post thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,100 | INFO     | [data] control thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,784 | INFO     | [data] copytool_out thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,840 | INFO     | [payload] failed_post thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,850 | INFO     | [job] validate thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,895 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,906 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:52,916 | INFO     | [job] control thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:53,028 | INFO     | [data] copytool_in thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:53,139 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:17:54,665 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:18:00,968 | INFO     | job.realtimelogging is not enabled
[2026-01-27 00:18:20] 2026-01-26 23:18:01,974 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 00:18:20] 2026-01-26 23:18:08,526 | INFO     | [monitor] cgroup control has ended
[2026-01-27 00:18:20] 2026-01-26 23:18:09,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550392756032)>', '<ExcThread(monitor, started 140549902292736)>']
[2026-01-27 00:18:20] 2026-01-26 23:18:14,985 | INFO     | all workflow threads have been joined
[2026-01-27 00:18:20] 2026-01-26 23:18:14,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 00:18:20] 2026-01-26 23:18:14,985 | INFO     | traces error code: 0
[2026-01-27 00:18:20] 2026-01-26 23:18:14,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 00:18:20] 2026-01-26 23:18:20,367 | INFO     | PID=2243865 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 00:18:20] 2026-01-26 23:18:20,368 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 00:18:20] 2026-01-26 23:18:20,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 00:18:20] 2026-01-26 23:18:20,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 00:18:20] 2026-01-26 23:18:20,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 00:18:20] 2026-01-26 23:18:20,368 | INFO     | [monitor] control thread has ended
[2026-01-27 00:18:20] 2026-01-26 23:18:20,414 [wrapper] ==== pilot stdout END ====
[2026-01-27 00:18:20] 2026-01-26 23:18:20,416 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 00:18:20] 2026-01-26 23:18:20,419 [wrapper] pilotpid: 2243865
[2026-01-27 00:18:20] 2026-01-26 23:18:20,421 [wrapper] Pilot exit status: 0
[2026-01-27 00:18:20] 2026-01-26 23:18:20,428 [wrapper] pandaids: 6983607948
[2026-01-27 00:18:20] 2026-01-26 23:18:20,443 [wrapper] cleanup supervisor_pilot 2253657 2243866
[2026-01-27 00:18:20] 2026-01-26 23:18:20,446 [wrapper] Test setup, not cleaning
[2026-01-27 00:18:20] 2026-01-26 23:18:20,448 [wrapper] apfmon messages muted
[2026-01-27 00:18:20] 2026-01-26 23:18:20,450 [wrapper] ==== wrapper stdout END ====
[2026-01-27 00:18:20] 2026-01-26 23:18:20,453 [wrapper] ==== wrapper stderr END ====
[2026-01-27 00:18:20]  *** Error codes and diagnostics ***
[2026-01-27 00:18:20]     "exeErrorCode": 0,
[2026-01-27 00:18:20]     "exeErrorDiag": "",
[2026-01-27 00:18:20]     "pilotErrorCode": 0,
[2026-01-27 00:18:20]     "pilotErrorDiag": "",
[2026-01-27 00:18:20]  *** Listing of results directory ***
[2026-01-27 00:18:20] total 410320
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 00:18:20] -rwx------ 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc      5111 Jan 26 02:14 queuedata.json
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc       100 Jan 26 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 00:18:20] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 22:40 run_atlas
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc       105 Jan 26 22:40 job.xml
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc 249987979 Jan 26 22:40 EVNT.48330019._000015.pool.root.1
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc    597781 Jan 26 22:40 input.tar.gz
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc     15845 Jan 26 22:40 start_atlas.sh
[2026-01-27 00:18:20] drwxrwx--x 2 boinc boinc      4096 Jan 26 22:40 shared
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc         0 Jan 26 22:40 boinc_setup_complete
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc      6441 Jan 26 22:40 init_data.xml
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc         0 Jan 26 22:40 boinc_lockfile
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc      2631 Jan 26 22:40 pandaJob.out
[2026-01-27 00:18:20] -rw------- 1 boinc boinc   1006433 Jan 26 22:40 agis_schedconf.cvmfs.json
[2026-01-27 00:18:20] -rw------- 1 boinc boinc   1516246 Jan 26 22:40 agis_ddmendpoints.agis.ALL.json
[2026-01-27 00:18:20] -rw------- 1 boinc boinc       420 Jan 26 22:41 workernode_map.json
[2026-01-27 00:18:20] drwx------ 5 boinc boinc      4096 Jan 26 22:41 pilot3
[2026-01-27 00:18:20] -rw------- 1 boinc boinc        95 Jan 27 00:17 pilot_heartbeat.json
[2026-01-27 00:18:20] -rw------- 1 boinc boinc 164054372 Jan 27 00:17 HITS.48330021._000354.pool.root.1
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc       529 Jan 27 00:17 boinc_task_state.xml
[2026-01-27 00:18:20] -rw------- 1 boinc boinc      1018 Jan 27 00:17 memory_monitor_summary.json
[2026-01-27 00:18:20] -rw------- 1 boinc boinc    254534 Jan 27 00:17 log.48330021._000354.job.log.tgz.1
[2026-01-27 00:18:20] -rw------- 1 boinc boinc      6298 Jan 27 00:17 heartbeat.json
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc      8192 Jan 27 00:18 boinc_mmap_file
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc        27 Jan 27 00:18 wrapper_checkpoint.txt
[2026-01-27 00:18:20] -rw------- 1 boinc boinc       747 Jan 27 00:18 pilotlog.txt
[2026-01-27 00:18:20] -rw------- 1 boinc boinc    843620 Jan 27 00:18 log.48330021._000354.job.log.1
[2026-01-27 00:18:20] -rw------- 1 boinc boinc       357 Jan 27 00:18 output.list
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc       620 Jan 27 00:18 runtime_log
[2026-01-27 00:18:20] -rw------- 1 boinc boinc   1116160 Jan 27 00:18 result.tar.gz
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc      8901 Jan 27 00:18 runtime_log.err
[2026-01-27 00:18:20] -rw------- 1 boinc boinc       658 Jan 27 00:18 LGDODmBLQ48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSF2KDmf6lKcn.diag
[2026-01-27 00:18:20] -rw-r--r-- 1 boinc boinc     10934 Jan 27 00:18 stderr.txt
[2026-01-27 00:18:20] HITS file was successfully produced:
[2026-01-27 00:18:20] -rw------- 1 boinc boinc 164054372 Jan 27 00:17 shared/HITS.pool.root.1
[2026-01-27 00:18:20]  *** Contents of shared directory: ***
[2026-01-27 00:18:20] total 406044
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc 249987979 Jan 26 22:40 ATLAS.root_0
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc    597781 Jan 26 22:40 input.tar.gz
[2026-01-27 00:18:20] -rw-r--r-- 2 boinc boinc     15845 Jan 26 22:40 start_atlas.sh
[2026-01-27 00:18:20] -rw------- 1 boinc boinc 164054372 Jan 27 00:17 HITS.pool.root.1
[2026-01-27 00:18:20] -rw------- 1 boinc boinc   1116160 Jan 27 00:18 result.tar.gz
00:18:22 (2239818): run_atlas exited; CPU time 16697.721709
00:18:22 (2239818): called boinc_finish(0)

</stderr_txt>
]]>

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