Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:33:24 (17959): wrapper (7.7.26015): starting
15:33:24 (17959): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 15:33:24] Arguments: --nthreads 8
[2026-01-26 15:33:24] Threads: 8
[2026-01-26 15:33:24] Checking for CVMFS
[2026-01-26 15:33:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 15:33:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 15:33:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 15:33:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 15:33:25] 2.11.0.0 8815 153626 96488 155549 2 188 3631014 4096001 2197 130560 2 10232257 99.432 10817239 526 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-26 15:33:25] CVMFS is ok
[2026-01-26 15:33:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 15:33:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 15:33:25] Further information can be found at the LHC@home message board.
[2026-01-26 15:33:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 15:33:25] Checking for apptainer binary...
[2026-01-26 15:33:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-26 15:33:25] apptainer is not installed, using version from CVMFS
[2026-01-26 15:33:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 15:33:25] WARNING: Environment variable TMPDIR already has value [/tmp/job_11050395/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node246
[2026-01-26 15:33:25] apptainer works
[2026-01-26 15:33:25] Set ATHENA_PROC_NUMBER=8
[2026-01-26 15:33:25] Set ATHENA_CORE_NUMBER=8
[2026-01-26 15:33:25] Starting ATLAS job with PandaID=6984061033
[2026-01-26 15:33:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11050395/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 16:22:42]  *** The last 200 lines of the pilot log: ***
[2026-01-26 16:22:42]  lfn=log.48317872._002599.job.log.tgz.1
[2026-01-26 16:22:42]  mtime=0
[2026-01-26 16:22:42]  protocol_id=None
[2026-01-26 16:22:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 16:22:42]  replicas=None
[2026-01-26 16:22:42]  scope=mc23_13p6TeV
[2026-01-26 16:22:42]  status=None
[2026-01-26 16:22:42]  status_code=0
[2026-01-26 16:22:42]  storage_token=
[2026-01-26 16:22:42]  surl=/tmp/job_11050395/atlas/pilot/slots/0/PanDA_Pilot-6984061033/log.48317872._002599.job.log.tgz.1
[2026-01-26 16:22:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/7c/log.48317872._002599.job.log.tgz.1
[2026-01-26 16:22:42]  workdir=None
[2026-01-26 16:22:42] ]
[2026-01-26 16:22:42] 2026-01-26 15:21:32,150 | INFO     | transferring file log.48317872._002599.job.log.tgz.1 from /tmp/job_11050395/atlas/pilot/slots/0/PanDA_Pilot-6984061033/log.48317872._002599.job.log.tgz.1 to /tmp/j
[2026-01-26 16:22:42] 2026-01-26 15:21:32,150 | INFO     | executing command: /usr/bin/env mv /tmp/job_11050395/atlas/pilot/slots/0/PanDA_Pilot-6984061033/log.48317872._002599.job.log.tgz.1 /tmp/job_11050395/atlas/pilot/sl
[2026-01-26 16:22:42] 2026-01-26 15:21:32,158 | INFO     | adding to output.list: log.48317872._002599.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c7/7c/log.48317872._002599.job.log.tg
[2026-01-26 16:22:42] 2026-01-26 15:21:32,158 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 16:22:42] 2026-01-26 15:21:32,158 | INFO     | summary of transferred files:
[2026-01-26 16:22:42] 2026-01-26 15:21:32,158 | INFO     |  -- lfn=log.48317872._002599.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 16:22:42] 2026-01-26 15:21:32,158 | INFO     | stage-out finished correctly
[2026-01-26 16:22:42] 2026-01-26 15:21:33,187 | INFO     | PID=22717 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 16:22:42] 2026-01-26 15:21:33,187 | INFO     | .. there are 4 such processes running
[2026-01-26 16:22:42] 2026-01-26 15:21:34,115 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 16:22:42] 2026-01-26 15:21:34,187 | INFO     | time since job start (2883s) is within the limit (349056.0s)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,192 | INFO     | time since job start (2885s) is within the limit (349056.0s)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,674 | INFO     | job 6984061033 has state=finished
[2026-01-26 16:22:42] 2026-01-26 15:21:36,674 | INFO     | preparing for final server update for job 6984061033 in state='finished'
[2026-01-26 16:22:42] 2026-01-26 15:21:36,674 | INFO     | reading metadata from: /tmp/job_11050395/atlas/pilot/slots/0/PanDA_Pilot-6984061033/jobReport.json
[2026-01-26 16:22:42] 2026-01-26 15:21:36,675 | INFO     | added worker_node to metadata from /tmp/job_11050395/atlas/pilot/slots/0/workernode_map.json
[2026-01-26 16:22:42] 2026-01-26 15:21:36,676 | INFO     | this job has now completed (state=finished)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,676 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,676 | INFO     | log transfer has been attempted: DONE
[2026-01-26 16:22:42] 2026-01-26 15:21:36,676 | INFO     | job 6984061033 has finished - writing final server update
[2026-01-26 16:22:42] 2026-01-26 15:21:36,676 | INFO     | total number of processed events: 400 (read)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | INFO     | using path: /tmp/job_11050395/atlas/pilot/slots/0/PanDA_Pilot-6984061033/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | INFO     | extracted standard info from prmon json
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 16:22:42] 2026-01-26 15:21:36,693 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | fitting pss+swap vs Time
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | sum of square deviations: 19832930.0
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | sum of deviations: -174527222.0
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | mean x: 1769439521.5
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | mean y: 2562776.25
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | intersect: 15573401990.84937
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | chi2: 0.0026634779491985405
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | current memory leak: -8.80 B/s (using 40 data points, chi2=0.00)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | could have reported an average CPU frequency of 2412 MHz (5 samples)
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | ..............................
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | . Timing measurements:
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | . get job = 0 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,694 | INFO     | . initial setup = 2 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | . payload setup = 2 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | . stage-in = 0 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | . payload execution = 2863 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | . stage-out = 0 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | . log creation = 0 s
[2026-01-26 16:22:42] 2026-01-26 15:21:36,695 | INFO     | ..............................
[2026-01-26 16:22:42] 2026-01-26 15:21:37,101 | INFO     | 
[2026-01-26 16:22:42] 2026-01-26 15:21:37,101 | INFO     | job summary report
[2026-01-26 16:22:42] 2026-01-26 15:21:37,101 | INFO     | --------------------------------------------------
[2026-01-26 16:22:42] 2026-01-26 15:21:37,101 | INFO     | PanDA job id: 6984061033
[2026-01-26 16:22:42] 2026-01-26 15:21:37,101 | INFO     | task id: 48317872
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | errors: (none)
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | pilot state: finished 
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | transexitcode: 0
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | exeerrorcode: 0
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | exeerrordiag: 
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | exitcode: 0
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | exitmsg: OK
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | cpuconsumptiontime: 20959 s
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | nevents: 400
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | neventsw: 0
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | pid: 28435
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | pgrp: 28435
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | corecount: 8
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | event service: False
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | sizes: {0: 2284360, 11: 2284360, 2868: 2309851, 2869: 2318934, 2871: 2318934, 2874: 2319160}
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | --------------------------------------------------
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | 
[2026-01-26 16:22:42] 2026-01-26 15:21:37,102 | INFO     | executing command: ls -lF /tmp/job_11050395/atlas/pilot/slots/0
[2026-01-26 16:22:42] 2026-01-26 15:21:37,110 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,110 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | job 6984061033 has completed (purged errors)
[2026-01-26 16:22:42] 2026-01-26 15:21:37,111 | INFO     | overall cleanup function is called
[2026-01-26 16:22:42] 2026-01-26 15:21:37,352 | WARNING  | process 28435 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 16:22:42] 2026-01-26 15:21:37,435 | INFO     | using path: /tmp/job_11050395/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 16:22:42] 2026-01-26 15:21:37,536 | INFO     | number of running child processes to parent process 28435: 1
[2026-01-26 16:22:42] 2026-01-26 15:21:37,536 | INFO     | maximum number of monitored processes: 6
[2026-01-26 16:22:42] 2026-01-26 15:21:37,536 | INFO     | aborting job monitoring since job object (job id=6984061033) has expired
[2026-01-26 16:22:42] 2026-01-26 15:21:38,117 | INFO     | --- collectZombieJob: --- 10, [28435]
[2026-01-26 16:22:42] 2026-01-26 15:21:38,117 | INFO     | zombie collector waiting for pid 28435
[2026-01-26 16:22:42] 2026-01-26 15:21:38,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 16:22:42] 2026-01-26 15:21:38,117 | INFO     | collected zombie processes
[2026-01-26 16:22:42] 2026-01-26 15:21:38,117 | INFO     | will attempt to kill all subprocesses of pid=28435
[2026-01-26 16:22:42] 2026-01-26 15:21:38,221 | INFO     | process IDs to be killed: [28435] (in reverse order)
[2026-01-26 16:22:42] 2026-01-26 15:21:38,259 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 16:22:42] 2026-01-26 15:21:38,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 16:22:42] 2026-01-26 15:21:38,263 | INFO     | did not find any defunct processes belonging to 28435
[2026-01-26 16:22:42] 2026-01-26 15:21:38,266 | INFO     | did not find any defunct processes belonging to 28435
[2026-01-26 16:22:42] 2026-01-26 15:21:38,266 | INFO     | ready for new job
[2026-01-26 16:22:42] 2026-01-26 15:21:38,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 16:22:42] 2026-01-26 15:21:38,267 | INFO     | **************************************
[2026-01-26 16:22:42] 2026-01-26 15:21:38,267 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 16:22:42] 2026-01-26 15:21:38,267 | INFO     | **************************************
[2026-01-26 16:22:42] 2026-01-26 15:21:38,267 | INFO     | 
[2026-01-26 16:22:42] 2026-01-26 15:21:38,281 | INFO     | architecture information:
[2026-01-26 16:22:42] 2026-01-26 15:21:38,281 | INFO     | executing command: cat /etc/os-release
[2026-01-26 16:22:42] 2026-01-26 15:21:38,288 | INFO     | cat /etc/os-release:
[2026-01-26 16:22:42] NAME="CentOS Linux"
[2026-01-26 16:22:42] VERSION="7 (Core)"
[2026-01-26 16:22:42] ID="centos"
[2026-01-26 16:22:42] ID_LIKE="rhel fedora"
[2026-01-26 16:22:42] VERSION_ID="7"
[2026-01-26 16:22:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 16:22:42] ANSI_COLOR="0;31"
[2026-01-26 16:22:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 16:22:42] HOME_URL="https://www.centos.org/"
[2026-01-26 16:22:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 16:22:42] 
[2026-01-26 16:22:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 16:22:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 16:22:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 16:22:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 16:22:42] 
[2026-01-26 16:22:42] 2026-01-26 15:21:38,288 | INFO     | **************************************
[2026-01-26 16:22:42] 2026-01-26 15:21:38,790 | INFO     | executing command: df -mP /tmp/job_11050395/atlas/pilot/slots/0
[2026-01-26 16:22:42] 2026-01-26 15:21:38,796 | INFO     | sufficient remaining disk space (223155847168 B)
[2026-01-26 16:22:42] 2026-01-26 15:21:38,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 16:22:42] 2026-01-26 15:21:38,797 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 16:22:42] 2026-01-26 15:21:38,797 | INFO     | update_server=False
[2026-01-26 16:22:42] 2026-01-26 15:21:38,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 16:22:42] 2026-01-26 15:21:38,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:22:42] 2026-01-26 15:21:38,797 | INFO     | aborting loop
[2026-01-26 16:22:42] 2026-01-26 15:21:39,091 | INFO     | all data control threads have been joined
[2026-01-26 16:22:42] 2026-01-26 15:21:39,802 | INFO     | [job] retrieve thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:39,802 | INFO     | [job] job monitor thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:39,861 | INFO     | all job control threads have been joined
[2026-01-26 16:22:42] 2026-01-26 15:21:40,097 | INFO     | [data] control thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:40,168 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 16:22:42] 2026-01-26 15:21:40,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 16:22:42] 2026-01-26 15:21:40,231 | INFO     | all payload control threads have been joined
[2026-01-26 16:22:42] 2026-01-26 15:21:40,500 | INFO     | [payload] failed_post thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:40,812 | INFO     | [payload] validate_post thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:40,867 | INFO     | [job] control thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,059 | INFO     | [job] validate thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,085 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,177 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,205 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,236 | INFO     | [payload] control thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,254 | INFO     | [data] copytool_in thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:41,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 16:22:42] 2026-01-26 15:21:42,224 | INFO     | [data] copytool_out thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:42,756 | INFO     | [job] queue monitor thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:44,173 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:21:49,379 | INFO     | job.realtimelogging is not enabled
[2026-01-26 16:22:42] 2026-01-26 15:21:50,384 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 16:22:42] 2026-01-26 15:22:09,385 | INFO     | PID=22717 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 16:22:42] 2026-01-26 15:22:09,385 | INFO     | .. there are 4 such processes running
[2026-01-26 16:22:42] 2026-01-26 15:22:09,385 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 16:22:42] 2026-01-26 15:22:09,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 16:22:42] 2026-01-26 15:22:09,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 16:22:42] 2026-01-26 15:22:35,904 | INFO     | [monitor] cgroup control has ended
[2026-01-26 16:22:42] 2026-01-26 15:22:37,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-01-26 16:22:42] 2026-01-26 15:22:38,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 16:22:42] 2026-01-26 15:22:38,528 | INFO     | [monitor] control thread has ended
[2026-01-26 16:22:42] 2026-01-26 15:22:42,679 | INFO     | all workflow threads have been joined
[2026-01-26 16:22:42] 2026-01-26 15:22:42,680 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 16:22:42] 2026-01-26 15:22:42,680 | INFO     | traces error code: 0
[2026-01-26 16:22:42] 2026-01-26 15:22:42,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 16:22:42] 2026-01-26 15:22:42,729 [wrapper] ==== pilot stdout END ====
[2026-01-26 16:22:42] 2026-01-26 15:22:42,731 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 16:22:42] 2026-01-26 15:22:42,732 [wrapper] pilotpid: 22717
[2026-01-26 16:22:42] 2026-01-26 15:22:42,733 [wrapper] Pilot exit status: 0
[2026-01-26 16:22:42] 2026-01-26 15:22:42,736 [wrapper] pandaids: 6984061033
[2026-01-26 16:22:42] 2026-01-26 15:22:42,760 [wrapper] cleanup supervisor_pilot 28115 22718
[2026-01-26 16:22:42] 2026-01-26 15:22:42,760 [wrapper] Test setup, not cleaning
[2026-01-26 16:22:42] 2026-01-26 15:22:42,762 [wrapper] apfmon messages muted
[2026-01-26 16:22:42] 2026-01-26 15:22:42,763 [wrapper] ==== wrapper stdout END ====
[2026-01-26 16:22:42] 2026-01-26 15:22:42,764 [wrapper] ==== wrapper stderr END ====
[2026-01-26 16:22:42]  *** Error codes and diagnostics ***
[2026-01-26 16:22:42]     "exeErrorCode": 0,
[2026-01-26 16:22:42]     "exeErrorDiag": "",
[2026-01-26 16:22:42]     "pilotErrorCode": 0,
[2026-01-26 16:22:42]     "pilotErrorDiag": "",
[2026-01-26 16:22:42]  *** Listing of results directory ***
[2026-01-26 16:22:42] total 672888
[2026-01-26 16:22:42] -rwx------ 1 mf493845 unix-user     36322 Jan 26 06:18 runpilot2-wrapper.sh
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      5111 Jan 26 06:23 queuedata.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user    584422 Jan 26 06:23 pilot3.tar.gz
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       100 Jan 26 13:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 16:22:42] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 26 13:26 run_atlas
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       105 Jan 26 13:26 job.xml
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user 498428172 Jan 26 15:33 EVNT.48317869._000052.pool.root.1
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 15:33 start_atlas.sh
[2026-01-26 16:22:42] drwxrwx--x 2 mf493845 unix-user       100 Jan 26 15:33 shared
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user    597758 Jan 26 15:33 input.tar.gz
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      6391 Jan 26 15:33 init_data.xml
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user         0 Jan 26 15:33 boinc_setup_complete
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      8192 Jan 26 15:33 boinc_mmap_file
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user         0 Jan 26 15:33 boinc_lockfile
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      2515 Jan 26 15:33 pandaJob.out
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user   1002189 Jan 26 15:33 agis_schedconf.cvmfs.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user   1516246 Jan 26 15:33 agis_ddmendpoints.agis.ALL.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       414 Jan 26 15:33 workernode_map.json
[2026-01-26 16:22:42] drwx------ 5 mf493845 unix-user       440 Jan 26 15:33 pilot3
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user 185132351 Jan 26 16:21 HITS.48317872._002599.pool.root.1
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user        95 Jan 26 16:21 pilot_heartbeat.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      1014 Jan 26 16:21 memory_monitor_summary.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user    326118 Jan 26 16:21 log.48317872._002599.job.log.tgz.1
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      6309 Jan 26 16:21 heartbeat.json
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      4903 Jan 26 16:22 pilotlog.txt
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user    460146 Jan 26 16:22 log.48317872._002599.job.log.1
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       357 Jan 26 16:22 output.list
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       620 Jan 26 16:22 runtime_log
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user    798720 Jan 26 16:22 result.tar.gz
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user      9219 Jan 26 16:22 runtime_log.err
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user       642 Jan 26 16:22 JjMODmsAU48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlH9KDmMdNHum.diag
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user     22213 Jan 26 16:22 stderr.txt
[2026-01-26 16:22:42] HITS file was successfully produced:
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user 185132351 Jan 26 16:21 shared/HITS.pool.root.1
[2026-01-26 16:22:42]  *** Contents of shared directory: ***
[2026-01-26 16:22:42] total 668924
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user 498428172 Jan 26 15:33 ATLAS.root_0
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 26 15:33 start_atlas.sh
[2026-01-26 16:22:42] -rw-r--r-- 2 mf493845 unix-user    597758 Jan 26 15:33 input.tar.gz
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user 185132351 Jan 26 16:21 HITS.pool.root.1
[2026-01-26 16:22:42] -rw------- 1 mf493845 unix-user    798720 Jan 26 16:22 result.tar.gz
16:22:43 (17959): run_atlas exited; CPU time 21004.073783
16:22:43 (17959): called boinc_finish(0)

</stderr_txt>
]]>

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