Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:27 (9825): wrapper (7.7.26015): starting
00:59:27 (9825): wrapper: running run_atlas (--nthreads 8)
[2026-01-27 00:59:27] Arguments: --nthreads 8
[2026-01-27 00:59:27] Threads: 8
[2026-01-27 00:59:27] Checking for CVMFS
[2026-01-27 00:59:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 00:59:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 00:59:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 00:59:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 00:59:30] 2.11.2.0 23802 60587 133056 155566 3 54 21368289 25165825 899 130560 0 20650115 99.811 15256194 3139 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-27 00:59:30] CVMFS is ok
[2026-01-27 00:59:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 00:59:30] Checking for apptainer binary...
[2026-01-27 00:59:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 00:59:30] Running /usr/bin/apptainer --version
[2026-01-27 00:59:31] apptainer version 1.3.2-1.el7
[2026-01-27 00:59:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 00:59:42] cg-vwn426.simple-grid.lan
[2026-01-27 00:59:42] apptainer works
[2026-01-27 00:59:42] Set ATHENA_PROC_NUMBER=8
[2026-01-27 00:59:42] Set ATHENA_CORE_NUMBER=8
[2026-01-27 00:59:42] Starting ATLAS job with PandaID=6983771372
[2026-01-27 00:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 05:18:48]  *** The last 200 lines of the pilot log: ***
[2026-01-27 05:18:48] 2026-01-27 04:17:42,870 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6983771372/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,871 | INFO     | extracted standard info from prmon json
[2026-01-27 05:18:48] 2026-01-27 04:17:42,871 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 05:18:48] 2026-01-27 04:17:42,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 05:18:48] 2026-01-27 04:17:42,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 05:18:48] 2026-01-27 04:17:42,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 05:18:48] 2026-01-27 04:17:42,877 | INFO     | fitting pss+swap vs Time
[2026-01-27 05:18:48] 2026-01-27 04:17:42,882 | INFO     | sum of square deviations: 4449281562.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,884 | INFO     | sum of deviations: 60044640386.99999
[2026-01-27 05:18:48] 2026-01-27 04:17:42,884 | INFO     | mean x: 1769480039.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,884 | INFO     | mean y: 2478959.2057613167
[2026-01-27 05:18:48] 2026-01-27 04:17:42,885 | INFO     | intersect: -23877284803.366776
[2026-01-27 05:18:48] 2026-01-27 04:17:42,885 | INFO     | chi2: 8.243930467671314
[2026-01-27 05:18:48] 2026-01-27 04:17:42,886 | INFO     | sum of square deviations: 4180243959.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,888 | INFO     | sum of deviations: 75421120410.00002
[2026-01-27 05:18:48] 2026-01-27 04:17:42,888 | INFO     | mean x: 1769479886.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,888 | INFO     | mean y: 2487522.0168067226
[2026-01-27 05:18:48] 2026-01-27 04:17:42,888 | INFO     | intersect: -31922959144.67783
[2026-01-27 05:18:48] 2026-01-27 04:17:42,889 | INFO     | chi2: 7.5502159659986665
[2026-01-27 05:18:48] 2026-01-27 04:17:42,889 | INFO     | current chi2=7.5502159659986665 (change=8.414851440014665 %)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,889 | INFO     | right removable region: 237
[2026-01-27 05:18:48] 2026-01-27 04:17:42,889 | INFO     | sum of square deviations: 4180243959.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,891 | INFO     | sum of deviations: -26473233169.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,892 | INFO     | mean x: 1769480191.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,892 | INFO     | mean y: 2527976.6050420166
[2026-01-27 05:18:48] 2026-01-27 04:17:42,892 | INFO     | intersect: 11208539432.240105
[2026-01-27 05:18:48] 2026-01-27 04:17:42,892 | INFO     | chi2: 3.151507206581037
[2026-01-27 05:18:48] 2026-01-27 04:17:42,893 | INFO     | current chi2=3.151507206581037 (change=61.77178811806194 %)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,893 | INFO     | sum of square deviations: 3922276332.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,895 | INFO     | sum of deviations: -80283768228.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,895 | INFO     | mean x: 1769480344.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,895 | INFO     | mean y: 2559665.836909871
[2026-01-27 05:18:48] 2026-01-27 04:17:42,895 | INFO     | intersect: 36221463638.17888
[2026-01-27 05:18:48] 2026-01-27 04:17:42,896 | INFO     | chi2: 1.0659896867688752
[2026-01-27 05:18:48] 2026-01-27 04:17:42,896 | INFO     | current chi2=1.0659896867688752 (change=66.17524197492376 %)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,896 | INFO     | sum of square deviations: 3675146117.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,898 | INFO     | sum of deviations: -84724659026.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,899 | INFO     | mean x: 1769480496.5
[2026-01-27 05:18:48] 2026-01-27 04:17:42,899 | INFO     | mean y: 2562353.653508772
[2026-01-27 05:18:48] 2026-01-27 04:17:42,899 | INFO     | intersect: 40795125954.46678
[2026-01-27 05:18:48] 2026-01-27 04:17:42,899 | INFO     | chi2: 0.9923806635588774
[2026-01-27 05:18:48] 2026-01-27 04:17:42,900 | INFO     | current chi2=0.9923806635588774 (change=6.905228457989522 %)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,900 | INFO     | left removable region: 30
[2026-01-27 05:18:48] 2026-01-27 04:17:42,900 | INFO     | sum of square deviations: 2750295288.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,907 | INFO     | sum of deviations: -49062563215.000015
[2026-01-27 05:18:48] 2026-01-27 04:17:42,907 | INFO     | mean x: 1769480771.0
[2026-01-27 05:18:48] 2026-01-27 04:17:42,907 | INFO     | mean y: 2560741.6618357487
[2026-01-27 05:18:48] 2026-01-27 04:17:42,907 | INFO     | intersect: 31568357535.811184
[2026-01-27 05:18:48] 2026-01-27 04:17:42,908 | INFO     | chi2: 0.1900845199754024
[2026-01-27 05:18:48] 2026-01-27 04:17:42,908 | INFO     | current memory leak: -17.84 B/s (using 207 data points, chi2=0.19)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | ..............................
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | . Timing measurements:
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | . get job = 0 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | . initial setup = 123 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | . payload setup = 146 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,909 | INFO     | . stage-in = 0 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,920 | INFO     | . payload execution = 14920 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,920 | INFO     | . stage-out = 3 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,920 | INFO     | . log creation = 1 s
[2026-01-27 05:18:48] 2026-01-27 04:17:42,920 | INFO     | ..............................
[2026-01-27 05:18:48] 2026-01-27 04:17:43,100 | INFO     | 
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | job summary report
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | --------------------------------------------------
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | PanDA job id: 6983771372
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | task id: 48298567
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | errors: (none)
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 05:18:48] 2026-01-27 04:17:43,101 | INFO     | pilot state: finished 
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | transexitcode: 0
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | exeerrorcode: 0
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | exeerrordiag: 
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | exitcode: 0
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | exitmsg: OK
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | cpuconsumptiontime: 69432 s
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | nevents: 400
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | neventsw: 0
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | pid: 18282
[2026-01-27 05:18:48] 2026-01-27 04:17:43,102 | INFO     | pgrp: 18282
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | corecount: 8
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | event service: False
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | sizes: {0: 2283932, 1: 2284393, 12: 2284393, 15071: 2315412, 15076: 2324410, 15078: 2324466, 15079: 2324788}
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | --------------------------------------------------
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | 
[2026-01-27 05:18:48] 2026-01-27 04:17:43,103 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-27 05:18:48] 2026-01-27 04:17:43,146 | INFO     | time since job start (15092s) is within the limit (349056.0s)
[2026-01-27 05:18:48] 2026-01-27 04:17:43,721 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,721 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,721 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,721 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,723 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 05:18:48] 2026-01-27 04:17:43,724 | INFO     | job 6983771372 has completed (purged errors)
[2026-01-27 05:18:48] 2026-01-27 04:17:43,724 | INFO     | overall cleanup function is called
[2026-01-27 05:18:48] 2026-01-27 04:17:44,254 | INFO     | PID=13841 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 05:18:48] 2026-01-27 04:17:44,254 | INFO     | .. there are 2 such processes running
[2026-01-27 05:18:48] 2026-01-27 04:17:44,732 | INFO     | --- collectZombieJob: --- 10, [18282]
[2026-01-27 05:18:48] 2026-01-27 04:17:44,733 | INFO     | zombie collector waiting for pid 18282
[2026-01-27 05:18:48] 2026-01-27 04:17:44,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 05:18:48] 2026-01-27 04:17:44,733 | INFO     | collected zombie processes
[2026-01-27 05:18:48] 2026-01-27 04:17:44,733 | INFO     | will attempt to kill all subprocesses of pid=18282
[2026-01-27 05:18:48] 2026-01-27 04:17:44,841 | INFO     | process IDs to be killed: [18282] (in reverse order)
[2026-01-27 05:18:48] 2026-01-27 04:17:45,677 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 05:18:48] 2026-01-27 04:17:45,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 05:18:48] 2026-01-27 04:17:45,680 | INFO     | did not find any defunct processes belonging to 18282
[2026-01-27 05:18:48] 2026-01-27 04:17:45,682 | INFO     | did not find any defunct processes belonging to 18282
[2026-01-27 05:18:48] 2026-01-27 04:17:45,682 | INFO     | ready for new job
[2026-01-27 05:18:48] 2026-01-27 04:17:45,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 05:18:48] 2026-01-27 04:17:45,684 | INFO     | **************************************
[2026-01-27 05:18:48] 2026-01-27 04:17:45,684 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 05:18:48] 2026-01-27 04:17:45,685 | INFO     | **************************************
[2026-01-27 05:18:48] 2026-01-27 04:17:45,685 | INFO     | 
[2026-01-27 05:18:48] 2026-01-27 04:17:45,685 | INFO     | pilot is running in a VM
[2026-01-27 05:18:48] 2026-01-27 04:17:45,685 | INFO     | architecture information:
[2026-01-27 05:18:48] 2026-01-27 04:17:45,693 | INFO     | executing command: cat /etc/os-release
[2026-01-27 05:18:48] 2026-01-27 04:17:45,970 | INFO     | cat /etc/os-release:
[2026-01-27 05:18:48] NAME="CentOS Linux"
[2026-01-27 05:18:48] VERSION="7 (Core)"
[2026-01-27 05:18:48] ID="centos"
[2026-01-27 05:18:48] ID_LIKE="rhel fedora"
[2026-01-27 05:18:48] VERSION_ID="7"
[2026-01-27 05:18:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 05:18:48] ANSI_COLOR="0;31"
[2026-01-27 05:18:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 05:18:48] HOME_URL="https://www.centos.org/"
[2026-01-27 05:18:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 05:18:48] 
[2026-01-27 05:18:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 05:18:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 05:18:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 05:18:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 05:18:48] 
[2026-01-27 05:18:48] 2026-01-27 04:17:45,970 | INFO     | **************************************
[2026-01-27 05:18:48] 2026-01-27 04:17:46,474 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-27 05:18:48] 2026-01-27 04:17:46,804 | INFO     | sufficient remaining disk space (496530096128 B)
[2026-01-27 05:18:48] 2026-01-27 04:17:46,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 05:18:48] 2026-01-27 04:17:46,805 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 05:18:48] 2026-01-27 04:17:46,805 | INFO     | update_server=False
[2026-01-27 05:18:48] 2026-01-27 04:17:46,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 05:18:48] 2026-01-27 04:17:46,975 | INFO     | all job control threads have been joined
[2026-01-27 05:18:48] 2026-01-27 04:17:47,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:18:48] 2026-01-27 04:17:47,285 | INFO     | aborting loop
[2026-01-27 05:18:48] 2026-01-27 04:17:47,521 | INFO     | all data control threads have been joined
[2026-01-27 05:18:48] 2026-01-27 04:17:47,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 05:18:48] 2026-01-27 04:17:47,811 | INFO     | [job] retrieve thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:47,844 | INFO     | [job] validate thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:47,846 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:47,982 | INFO     | [job] control thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,017 | INFO     | [payload] failed_post thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,055 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:18:48] 2026-01-27 04:17:48,200 | INFO     | all payload control threads have been joined
[2026-01-27 05:18:48] 2026-01-27 04:17:48,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 05:18:48] 2026-01-27 04:17:48,291 | INFO     | [job] job monitor thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,296 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,435 | INFO     | [data] copytool_in thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,528 | INFO     | [data] control thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,772 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,837 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:48,961 | INFO     | [payload] validate_post thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:49,062 | INFO     | [job] queue monitor thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:49,207 | INFO     | [payload] control thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:50,260 | INFO     | [data] copytool_out thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:17:51,775 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 05:18:48] 2026-01-27 04:18:16,437 | INFO     | PID=13841 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-27 05:18:48] 2026-01-27 04:18:16,437 | INFO     | .. there are 2 such processes running
[2026-01-27 05:18:48] 2026-01-27 04:18:16,438 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 05:18:48] 2026-01-27 04:18:16,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 05:18:48] 2026-01-27 04:18:16,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 05:18:48] 2026-01-27 04:18:36,320 | INFO     | [monitor] cgroup control has ended
[2026-01-27 05:18:48] 2026-01-27 04:18:37,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140580251465536)>', '<ExcThread(monitor, started 140579941885696)>']
[2026-01-27 05:18:48] 2026-01-27 04:18:38,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 05:18:48] 2026-01-27 04:18:38,571 | INFO     | [monitor] control thread has ended
[2026-01-27 05:18:48] 2026-01-27 04:18:43,024 | INFO     | all workflow threads have been joined
[2026-01-27 05:18:48] 2026-01-27 04:18:43,025 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 05:18:48] 2026-01-27 04:18:43,025 | INFO     | traces error code: 0
[2026-01-27 05:18:48] 2026-01-27 04:18:43,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 05:18:48] 2026-01-27 04:18:43,432 [wrapper] ==== pilot stdout END ====
[2026-01-27 05:18:48] 2026-01-27 04:18:43,536 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 05:18:48] 2026-01-27 04:18:43,621 [wrapper] pilotpid: 13841
[2026-01-27 05:18:48] 2026-01-27 04:18:43,704 [wrapper] Pilot exit status: 0
[2026-01-27 05:18:48] 2026-01-27 04:18:44,247 [wrapper] pandaids: 6983771372
[2026-01-27 05:18:48] 2026-01-27 04:18:45,286 [wrapper] cleanup supervisor_pilot  7817 13842
[2026-01-27 05:18:48] 2026-01-27 04:18:45,384 [wrapper] Test setup, not cleaning
[2026-01-27 05:18:48] 2026-01-27 04:18:45,476 [wrapper] apfmon messages muted
[2026-01-27 05:18:48] 2026-01-27 04:18:45,591 [wrapper] ==== wrapper stdout END ====
[2026-01-27 05:18:48] 2026-01-27 04:18:45,692 [wrapper] ==== wrapper stderr END ====
[2026-01-27 05:18:48]  *** Error codes and diagnostics ***
[2026-01-27 05:18:48]     "exeErrorCode": 0,
[2026-01-27 05:18:48]     "exeErrorDiag": "",
[2026-01-27 05:18:48]     "pilotErrorCode": 0,
[2026-01-27 05:18:48]     "pilotErrorDiag": "",
[2026-01-27 05:18:48]  *** Listing of results directory ***
[2026-01-27 05:18:48] total 418008
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc      5111 Jan 26 02:12 queuedata.json
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc    584422 Jan 26 02:12 pilot3.tar.gz
[2026-01-27 05:18:48] -rwx------. 1 boinc boinc     36322 Jan 26 02:12 runpilot2-wrapper.sh
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc       100 Jan 27 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 05:18:48] -rwxr-xr-x. 1 boinc boinc      7986 Jan 27 00:59 run_atlas
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc       105 Jan 27 00:59 job.xml
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc      6390 Jan 27 00:59 init_data.xml
[2026-01-27 05:18:48] -rw-r--r--. 2 boinc boinc 248996819 Jan 27 00:59 EVNT.48298565._000023.pool.root.1
[2026-01-27 05:18:48] -rw-r--r--. 2 boinc boinc     15845 Jan 27 00:59 start_atlas.sh
[2026-01-27 05:18:48] drwxrwx--x. 2 boinc boinc        68 Jan 27 00:59 shared
[2026-01-27 05:18:48] -rw-r--r--. 2 boinc boinc    597765 Jan 27 00:59 input.tar.gz
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc         0 Jan 27 00:59 boinc_lockfile
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc      2614 Jan 27 00:59 pandaJob.out
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc       415 Jan 27 01:06 workernode_map.json
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc   1006441 Jan 27 01:06 agis_schedconf.cvmfs.json
[2026-01-27 05:18:48] drwx------. 5 boinc boinc      4096 Jan 27 01:06 pilot3
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc 169905512 Jan 27 05:16 HITS.48298567._000569.pool.root.1
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc       531 Jan 27 05:16 boinc_task_state.xml
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc      1022 Jan 27 05:17 memory_monitor_summary.json
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc   1516246 Jan 27 05:17 agis_ddmendpoints.agis.ALL.json
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc    481219 Jan 27 05:17 log.48298567._000569.job.log.tgz.1
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc      6329 Jan 27 05:17 heartbeat.json
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc        95 Jan 27 05:18 pilot_heartbeat.json
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc        28 Jan 27 05:18 wrapper_checkpoint.txt
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc      8192 Jan 27 05:18 boinc_mmap_file
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc      4880 Jan 27 05:18 pilotlog.txt
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc   2125856 Jan 27 05:18 log.48298567._000569.job.log.1
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc       357 Jan 27 05:18 output.list
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc       620 Jan 27 05:18 runtime_log
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc   2621440 Jan 27 05:18 result.tar.gz
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc      8816 Jan 27 05:18 runtime_log.err
[2026-01-27 05:18:48] -rw-------. 1 boinc boinc       656 Jan 27 05:18 BsVLDmIKQ48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmof8KDmoOkxWn.diag
[2026-01-27 05:18:48] -rw-r--r--. 1 boinc boinc     20812 Jan 27 05:18 stderr.txt
[2026-01-27 05:18:49] HITS file was successfully produced:
[2026-01-27 05:18:49] -rw-------. 1 boinc boinc 169905512 Jan 27 05:16 shared/HITS.pool.root.1
[2026-01-27 05:18:49]  *** Contents of shared directory: ***
[2026-01-27 05:18:49] total 412248
[2026-01-27 05:18:49] -rw-r--r--. 2 boinc boinc 248996819 Jan 27 00:59 ATLAS.root_0
[2026-01-27 05:18:49] -rw-r--r--. 2 boinc boinc     15845 Jan 27 00:59 start_atlas.sh
[2026-01-27 05:18:49] -rw-r--r--. 2 boinc boinc    597765 Jan 27 00:59 input.tar.gz
[2026-01-27 05:18:49] -rw-------. 1 boinc boinc 169905512 Jan 27 05:16 HITS.pool.root.1
[2026-01-27 05:18:49] -rw-------. 1 boinc boinc   2621440 Jan 27 05:18 result.tar.gz
05:18:50 (9825): run_atlas exited; CPU time 69592.245153
05:18:50 (9825): called boinc_finish(0)

</stderr_txt>
]]>

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