Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:26:01 (3013148): wrapper (7.7.26015): starting
04:26:01 (3013148): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 04:26:01] Arguments: --nthreads 4
[2026-01-27 04:26:01] Threads: 4
[2026-01-27 04:26:01] Checking for CVMFS
[2026-01-27 04:26:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:26:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:26:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:26:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:26:02] 2.9.2.0 1266538 9396 111600 155571 1 50 22224852 36864001 0 130560 0 4833333 99.988 305412 6565 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 04:26:02] CVMFS is ok
[2026-01-27 04:26:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:26:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:26:02] Further information can be found at the LHC@home message board.
[2026-01-27 04:26:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:26:02] Checking for apptainer binary...
[2026-01-27 04:26:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:26:02] Running /usr/bin/apptainer --version
[2026-01-27 04:26:02] apptainer version 1.4.1-1.1
[2026-01-27 04:26:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:26:02] thA314
[2026-01-27 04:26:02] apptainer works
[2026-01-27 04:26:02] Set ATHENA_PROC_NUMBER=4
[2026-01-27 04:26:02] Set ATHENA_CORE_NUMBER=4
[2026-01-27 04:26:02] Starting ATLAS job with PandaID=6984043305
[2026-01-27 04:26:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 04:33:21]  *** The last 200 lines of the pilot log: ***
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | could have reported an average CPU frequency of 3413 MHz (4 samples)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . Timing measurements:
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . get job = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . initial setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-in = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload execution = 231 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-out = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . log creation = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6984043305/pilotlog.txt
[2026-01-27 04:33:21] 2026-01-27 03:32:25,968 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-27 04:33:21] - Log from pilotlog.txt -
[2026-01-27 04:33:21] 2026-01-27 03:32:25,949 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6984043305/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,949 | INFO     | extracted standard info from prmon json
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | wrong length of table data, x=[1769484394.0, 1769484455.0, 1769484516.0, 1769484577.0], y=[1950.0, 1342854.0, 1444494.0, 2404877.0] (must be same and length>=4)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | could have reported an average CPU frequency of 3413 MHz (4 samples)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . Timing measurements:
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . get job = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . initial setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-in = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload execution = 231 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-out = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . log creation = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6984043305/pilotlog.txt
[2026-01-27 04:33:21] 2026-01-27 03:32:25,968 | WARNING  | 
[2026-01-27 04:33:21] [begin log extracts]
[2026-01-27 04:33:21] - Log from pilotlog.txt -
[2026-01-27 04:33:21] 2026-01-27 03:32:25,949 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6984043305/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,949 | INFO     | extracted standard info from prmon json
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | WARNING  | wrong length of table data, x=[1769484394.0, 1769484455.0, 1769484516.0, 1769484577.0], y=[1950.0, 1342854.0, 1444494.0, 2404877.0] (must be same and length>=4)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | could have reported an average CPU frequency of 3413 MHz (4 samples)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . Timing measurements:
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . get job = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . initial setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload setup = 4 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-in = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . payload execution = 231 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . stage-out = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,950 | INFO     | . log creation = 0 s
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | ..............................
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-27 04:33:21] 2026-01-27 03:32:25,951 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6984043305/pilotlog.txt
[2026-01-27 04:33:21] [end log extracts]
[2026-01-27 04:33:21] 2026-01-27 03:32:25,969 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2026-01-27 04:33:21] 2026-01-27 03:32:25,969 | WARNING  | pilotErrorDiags = ["Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | job summary report
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | --------------------------------------------------
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | PanDA job id: 6984043305
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | task id: 48317911
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-27 03:30:18,290 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | pilot error code: 1328
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | pilot state: failed 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | transexitcode: 65
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | exeerrorcode: 0
[2026-01-27 04:33:21] 2026-01-27 03:32:26,469 | INFO     | exeerrordiag: 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | exitcode: 65
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8225.53 KB/s
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | cpuconsumptiontime: 108 s
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | nevents: 0
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | neventsw: 0
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | pid: 3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | pgrp: 3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | corecount: 4
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | event service: False
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | sizes: {0: 2284210, 11: 2284210, 239: 2308595, 240: 2312893, 243: 2312921, 360: 2313087}
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | --------------------------------------------------
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | 
[2026-01-27 04:33:21] 2026-01-27 03:32:26,470 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | job 6984043305 has completed (purged errors)
[2026-01-27 04:33:21] 2026-01-27 03:32:26,492 | INFO     | overall cleanup function is called
[2026-01-27 04:33:21] 2026-01-27 03:32:27,498 | INFO     | --- collectZombieJob: --- 10, [3021763]
[2026-01-27 04:33:21] 2026-01-27 03:32:27,499 | INFO     | zombie collector waiting for pid 3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:27,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 04:33:21] 2026-01-27 03:32:27,499 | INFO     | collected zombie processes
[2026-01-27 04:33:21] 2026-01-27 03:32:27,499 | INFO     | will attempt to kill all subprocesses of pid=3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:27,543 | INFO     | process IDs to be killed: [3021763] (in reverse order)
[2026-01-27 04:33:21] 2026-01-27 03:32:27,579 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 04:33:21] 2026-01-27 03:32:27,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 04:33:21] 2026-01-27 03:32:27,581 | INFO     | did not find any defunct processes belonging to 3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:27,582 | INFO     | did not find any defunct processes belonging to 3021763
[2026-01-27 04:33:21] 2026-01-27 03:32:27,582 | INFO     | ready for new job
[2026-01-27 04:33:21] 2026-01-27 03:32:27,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 04:33:21] 2026-01-27 03:32:27,583 | INFO     | **************************************
[2026-01-27 04:33:21] 2026-01-27 03:32:27,583 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 04:33:21] 2026-01-27 03:32:27,583 | INFO     | **************************************
[2026-01-27 04:33:21] 2026-01-27 03:32:27,583 | INFO     | 
[2026-01-27 04:33:21] 2026-01-27 03:32:27,583 | INFO     | architecture information:
[2026-01-27 04:33:21] 2026-01-27 03:32:27,584 | INFO     | executing command: cat /etc/os-release
[2026-01-27 04:33:21] 2026-01-27 03:32:27,598 | INFO     | cat /etc/os-release:
[2026-01-27 04:33:21] NAME="CentOS Linux"
[2026-01-27 04:33:21] VERSION="7 (Core)"
[2026-01-27 04:33:21] ID="centos"
[2026-01-27 04:33:21] ID_LIKE="rhel fedora"
[2026-01-27 04:33:21] VERSION_ID="7"
[2026-01-27 04:33:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 04:33:21] ANSI_COLOR="0;31"
[2026-01-27 04:33:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 04:33:21] HOME_URL="https://www.centos.org/"
[2026-01-27 04:33:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 04:33:21] 
[2026-01-27 04:33:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 04:33:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 04:33:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 04:33:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 04:33:21] 
[2026-01-27 04:33:21] 2026-01-27 03:32:27,599 | INFO     | **************************************
[2026-01-27 04:33:21] 2026-01-27 03:32:28,102 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | INFO     | sufficient remaining disk space (232577302528 B)
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | INFO     | update_server=False
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 04:33:21] 2026-01-27 03:32:28,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 04:33:21] 2026-01-27 03:32:28,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 04:33:21] 2026-01-27 03:32:28,298 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 04:33:21] 2026-01-27 03:32:28,298 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 04:33:21] 2026-01-27 03:32:28,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:33:21] 2026-01-27 03:32:28,298 | INFO     | will abort loop
[2026-01-27 04:33:21] 2026-01-27 03:32:28,414 | INFO     | all data control threads have been joined
[2026-01-27 04:33:21] 2026-01-27 03:32:28,616 | INFO     | all payload control threads have been joined
[2026-01-27 04:33:21] 2026-01-27 03:32:29,069 | INFO     | all job control threads have been joined
[2026-01-27 04:33:21] 2026-01-27 03:32:29,126 | INFO     | [job] retrieve thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,198 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,290 | INFO     | [payload] validate_post thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,304 | INFO     | [job] job monitor thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,321 | INFO     | [data] copytool_in thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,417 | INFO     | [data] control thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,464 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,621 | INFO     | [payload] control thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,790 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:29,822 | INFO     | [payload] failed_post thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:30,075 | INFO     | [job] control thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:30,126 | INFO     | [data] copytool_out thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:30,507 | INFO     | [job] validate thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:30,618 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:31,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 04:33:21] 2026-01-27 03:32:32,027 | INFO     | [job] queue monitor thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:32,127 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 04:33:21] 2026-01-27 03:32:58,718 | INFO     | PID=3017254 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 04:33:21] 2026-01-27 03:32:58,718 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 04:33:21] 2026-01-27 03:32:58,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 04:33:21] 2026-01-27 03:32:58,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 04:33:21] 2026-01-27 03:33:15,069 | INFO     | [monitor] cgroup control has ended
[2026-01-27 04:33:21] 2026-01-27 03:33:16,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627363456832)>', '<ExcThread(monitor, started 140626850981632)>']
[2026-01-27 04:33:21] 2026-01-27 03:33:16,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 04:33:21] 2026-01-27 03:33:16,811 | INFO     | [monitor] control thread has ended
[2026-01-27 04:33:21] 2026-01-27 03:33:21,771 | INFO     | all workflow threads have been joined
[2026-01-27 04:33:21] 2026-01-27 03:33:21,771 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 04:33:21] 2026-01-27 03:33:21,771 | INFO     | traces error code: 0
[2026-01-27 04:33:21] 2026-01-27 03:33:21,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 04:33:21] 2026-01-27 03:33:21,849 [wrapper] ==== pilot stdout END ====
[2026-01-27 04:33:21] 2026-01-27 03:33:21,853 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 04:33:21] 2026-01-27 03:33:21,858 [wrapper] pilotpid: 3017254
[2026-01-27 04:33:21] 2026-01-27 03:33:21,862 [wrapper] Pilot exit status: 0
[2026-01-27 04:33:21] 2026-01-27 03:33:21,874 [wrapper] pandaids: 6984043305
[2026-01-27 04:33:21] 2026-01-27 03:33:21,896 [wrapper] cleanup supervisor_pilot 3017260 3017255
[2026-01-27 04:33:21] 2026-01-27 03:33:21,900 [wrapper] Test setup, not cleaning
[2026-01-27 04:33:21] 2026-01-27 03:33:21,904 [wrapper] apfmon messages muted
[2026-01-27 04:33:21] 2026-01-27 03:33:21,908 [wrapper] ==== wrapper stdout END ====
[2026-01-27 04:33:21] 2026-01-27 03:33:21,912 [wrapper] ==== wrapper stderr END ====
[2026-01-27 04:33:21]  *** Error codes and diagnostics ***
[2026-01-27 04:33:21]     "exeErrorCode": 0,
[2026-01-27 04:33:21]     "exeErrorDiag": "",
[2026-01-27 04:33:21]     "pilotErrorCode": 1305,
[2026-01-27 04:33:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8225.53 KB/s",
[2026-01-27 04:33:21]  *** Listing of results directory ***
[2026-01-27 04:33:21] total 524672
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-27 04:33:21] -rwx------ 1 boinc boinc     36322 Jan 26 06:17 runpilot2-wrapper.sh
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:21 queuedata.json
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc       100 Jan 27 04:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 04:33:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 04:26 run_atlas
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc       105 Jan 27 04:26 job.xml
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc 532811965 Jan 27 04:26 EVNT.48317909._000019.pool.root.1
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc    597756 Jan 27 04:26 input.tar.gz
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:26 start_atlas.sh
[2026-01-27 04:33:21] drwxrwx--x 2 boinc boinc      4096 Jan 27 04:26 shared
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:26 boinc_setup_complete
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc      6376 Jan 27 04:26 init_data.xml
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:26 boinc_lockfile
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc      2499 Jan 27 04:26 pandaJob.out
[2026-01-27 04:33:21] -rw------- 1 boinc boinc   1006433 Jan 27 04:26 agis_schedconf.cvmfs.json
[2026-01-27 04:33:21] -rw------- 1 boinc boinc   1516246 Jan 27 04:26 agis_ddmendpoints.agis.ALL.json
[2026-01-27 04:33:21] -rw------- 1 boinc boinc       427 Jan 27 04:26 workernode_map.json
[2026-01-27 04:33:21] drwx------ 5 boinc boinc      4096 Jan 27 04:26 pilot3
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc       527 Jan 27 04:30 boinc_task_state.xml
[2026-01-27 04:33:21] -rw------- 1 boinc boinc       999 Jan 27 04:30 memory_monitor_summary.json
[2026-01-27 04:33:21] -rw------- 1 boinc boinc    147361 Jan 27 04:30 log.48317911._000654.job.log.tgz.1
[2026-01-27 04:33:21] -rw------- 1 boinc boinc        95 Jan 27 04:32 pilot_heartbeat.json
[2026-01-27 04:33:21] -rw------- 1 boinc boinc      7199 Jan 27 04:32 heartbeat.json
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc      8192 Jan 27 04:32 boinc_mmap_file
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc        24 Jan 27 04:32 wrapper_checkpoint.txt
[2026-01-27 04:33:21] -rw------- 1 boinc boinc      4934 Jan 27 04:33 pilotlog.txt
[2026-01-27 04:33:21] -rw------- 1 boinc boinc    109389 Jan 27 04:33 log.48317911._000654.job.log.1
[2026-01-27 04:33:21] -rw------- 1 boinc boinc       188 Jan 27 04:33 output.list
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:33 runtime_log
[2026-01-27 04:33:21] -rw------- 1 boinc boinc    276480 Jan 27 04:33 result.tar.gz
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc      8743 Jan 27 04:33 runtime_log.err
[2026-01-27 04:33:21] -rw------- 1 boinc boinc       650 Jan 27 04:33 WqWLDm59T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmof2KDmleQXjn.diag
[2026-01-27 04:33:21] -rw-r--r-- 1 boinc boinc     22177 Jan 27 04:33 stderr.txt
[2026-01-27 04:33:21] No HITS result produced
[2026-01-27 04:33:21]  *** Contents of shared directory: ***
[2026-01-27 04:33:21] total 521204
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc 532811965 Jan 27 04:26 ATLAS.root_0
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc    597756 Jan 27 04:26 input.tar.gz
[2026-01-27 04:33:21] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:26 start_atlas.sh
[2026-01-27 04:33:21] -rw------- 1 boinc boinc    276480 Jan 27 04:33 result.tar.gz
04:33:23 (3013148): run_atlas exited; CPU time 104.413416
04:33:23 (3013148): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN