Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:07 (530779): wrapper (7.7.26015): starting
19:23:07 (530779): wrapper: running run_atlas (--nthreads 2)
[2026-01-26 19:23:07] Arguments: --nthreads 2
[2026-01-26 19:23:07] Threads: 2
[2026-01-26 19:23:07] Checking for CVMFS
[2026-01-26 19:23:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:23:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:23:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:23:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:23:07] 2.9.2.0 2882 4914 60656 155556 4 49 21302548 36864000 0 130560 0 1578286 99.979 182190 4836 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 19:23:07] CVMFS is ok
[2026-01-26 19:23:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:23:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:23:07] Further information can be found at the LHC@home message board.
[2026-01-26 19:23:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:23:07] Checking for apptainer binary...
[2026-01-26 19:23:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:23:07] Running /usr/bin/apptainer --version
[2026-01-26 19:23:07] apptainer version 1.4.1-1.1
[2026-01-26 19:23:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:23:07] madmaxA275
[2026-01-26 19:23:07] apptainer works
[2026-01-26 19:23:07] Set ATHENA_PROC_NUMBER=2
[2026-01-26 19:23:07] Set ATHENA_CORE_NUMBER=2
[2026-01-26 19:23:07] Starting ATLAS job with PandaID=6983773420
[2026-01-26 19:23:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 21:29:44]  *** The last 200 lines of the pilot log: ***
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,768 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 21:29:44] 2026-01-26 20:28:48,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,768 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 21:29:44] 2026-01-26 20:28:48,768 | INFO     | job 6983773420 has completed (purged errors)
[2026-01-26 21:29:44] 2026-01-26 20:28:48,768 | INFO     | overall cleanup function is called
[2026-01-26 21:29:44] 2026-01-26 20:28:49,775 | INFO     | --- collectZombieJob: --- 10, [539208]
[2026-01-26 21:29:44] 2026-01-26 20:28:49,775 | INFO     | zombie collector waiting for pid 539208
[2026-01-26 21:29:44] 2026-01-26 20:28:49,775 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 21:29:44] 2026-01-26 20:28:49,776 | INFO     | collected zombie processes
[2026-01-26 21:29:44] 2026-01-26 20:28:49,776 | INFO     | will attempt to kill all subprocesses of pid=539208
[2026-01-26 21:29:44] 2026-01-26 20:28:49,807 | INFO     | process IDs to be killed: [539208] (in reverse order)
[2026-01-26 21:29:44] 2026-01-26 20:28:49,828 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 21:29:44] 2026-01-26 20:28:49,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 21:29:44] 2026-01-26 20:28:49,829 | INFO     | did not find any defunct processes belonging to 539208
[2026-01-26 21:29:44] 2026-01-26 20:28:49,829 | INFO     | did not find any defunct processes belonging to 539208
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | ready for new job
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | **************************************
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | **************************************
[2026-01-26 21:29:44] 2026-01-26 20:28:49,830 | INFO     | 
[2026-01-26 21:29:44] 2026-01-26 20:28:49,831 | INFO     | architecture information:
[2026-01-26 21:29:44] 2026-01-26 20:28:49,831 | INFO     | executing command: cat /etc/os-release
[2026-01-26 21:29:44] 2026-01-26 20:28:49,839 | INFO     | cat /etc/os-release:
[2026-01-26 21:29:44] NAME="CentOS Linux"
[2026-01-26 21:29:44] VERSION="7 (Core)"
[2026-01-26 21:29:44] ID="centos"
[2026-01-26 21:29:44] ID_LIKE="rhel fedora"
[2026-01-26 21:29:44] VERSION_ID="7"
[2026-01-26 21:29:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 21:29:44] ANSI_COLOR="0;31"
[2026-01-26 21:29:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 21:29:44] HOME_URL="https://www.centos.org/"
[2026-01-26 21:29:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 21:29:44] 
[2026-01-26 21:29:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 21:29:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 21:29:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 21:29:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 21:29:44] 
[2026-01-26 21:29:44] 2026-01-26 20:28:49,839 | INFO     | **************************************
[2026-01-26 21:29:44] 2026-01-26 20:28:50,343 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | INFO     | sufficient remaining disk space (261134221312 B)
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | INFO     | update_server=False
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | INFO     | aborting loop
[2026-01-26 21:29:44] 2026-01-26 20:28:50,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 21:29:44] 2026-01-26 20:28:50,535 | INFO     | all data control threads have been joined
[2026-01-26 21:29:44] 2026-01-26 20:28:51,057 | INFO     | all job control threads have been joined
[2026-01-26 21:29:44] 2026-01-26 20:28:51,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 21:29:44] 2026-01-26 20:28:51,360 | INFO     | [job] queue monitor thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,361 | INFO     | [job] retrieve thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,361 | INFO     | [job] job monitor thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,370 | INFO     | [data] copytool_in thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,469 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,506 | INFO     | all payload control threads have been joined
[2026-01-26 21:29:44] 2026-01-26 20:28:51,538 | INFO     | [data] control thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:51,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 21:29:44] 2026-01-26 20:28:52,000 | INFO     | [payload] validate_post thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,063 | INFO     | [job] control thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,429 | INFO     | [payload] failed_post thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,512 | INFO     | [payload] control thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,680 | INFO     | [job] validate thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,712 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:52,728 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:53,287 | INFO     | [data] copytool_out thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:28:55,888 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:29:00,457 | INFO     | job.realtimelogging is not enabled
[2026-01-26 21:29:44] 2026-01-26 20:29:01,463 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 21:29:44] 2026-01-26 20:29:20,354 | INFO     | PID=534801 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 21:29:44] 2026-01-26 20:29:20,354 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 21:29:44] 2026-01-26 20:29:20,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 21:29:44] 2026-01-26 20:29:20,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 21:29:44] 2026-01-26 20:29:38,756 | INFO     | [monitor] cgroup control has ended
[2026-01-26 21:29:44] 2026-01-26 20:29:39,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047348873024)>', '<ExcThread(monitor, started 140046854248192)>']
[2026-01-26 21:29:44] 2026-01-26 20:29:39,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 21:29:44] 2026-01-26 20:29:39,450 | INFO     | [monitor] control thread has ended
[2026-01-26 21:29:44] 2026-01-26 20:29:44,093 | INFO     | all workflow threads have been joined
[2026-01-26 21:29:44] 2026-01-26 20:29:44,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 21:29:44] 2026-01-26 20:29:44,094 | INFO     | traces error code: 0
[2026-01-26 21:29:44] 2026-01-26 20:29:44,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 21:29:44] 2026-01-26 20:29:44,137 [wrapper] ==== pilot stdout END ====
[2026-01-26 21:29:44] 2026-01-26 20:29:44,139 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 21:29:44] 2026-01-26 20:29:44,141 [wrapper] pilotpid: 534801
[2026-01-26 21:29:44] 2026-01-26 20:29:44,143 [wrapper] Pilot exit status: 0
[2026-01-26 21:29:44] 2026-01-26 20:29:44,149 [wrapper] pandaids: 6983773420
[2026-01-26 21:29:44] 2026-01-26 20:29:44,160 [wrapper] cleanup supervisor_pilot  544100 534802
[2026-01-26 21:29:44] 2026-01-26 20:29:44,162 [wrapper] Test setup, not cleaning
[2026-01-26 21:29:44] 2026-01-26 20:29:44,164 [wrapper] apfmon messages muted
[2026-01-26 21:29:44] 2026-01-26 20:29:44,166 [wrapper] ==== wrapper stdout END ====
[2026-01-26 21:29:44] 2026-01-26 20:29:44,168 [wrapper] ==== wrapper stderr END ====
[2026-01-26 21:29:44]  *** Error codes and diagnostics ***
[2026-01-26 21:29:44]     "exeErrorCode": 0,
[2026-01-26 21:29:44]     "exeErrorDiag": "",
[2026-01-26 21:29:44]     "pilotErrorCode": 0,
[2026-01-26 21:29:44]     "pilotErrorDiag": "",
[2026-01-26 21:29:44]  *** Listing of results directory ***
[2026-01-26 21:29:44] total 678364
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-26 21:29:44] -rwx------ 1 boinc boinc     36322 Jan 26 06:17 runpilot2-wrapper.sh
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:21 queuedata.json
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc       100 Jan 26 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 21:29:44] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 19:23 run_atlas
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc       105 Jan 26 19:23 job.xml
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc 502772542 Jan 26 19:23 EVNT.48317869._000045.pool.root.1
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc    597751 Jan 26 19:23 input.tar.gz
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:23 start_atlas.sh
[2026-01-26 21:29:44] drwxrwx--x 2 boinc boinc      4096 Jan 26 19:23 shared
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:23 boinc_setup_complete
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc      6208 Jan 26 19:23 init_data.xml
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:23 boinc_lockfile
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc      2515 Jan 26 19:23 pandaJob.out
[2026-01-26 21:29:44] -rw------- 1 boinc boinc   1006384 Jan 26 19:23 agis_schedconf.cvmfs.json
[2026-01-26 21:29:44] -rw------- 1 boinc boinc   1516246 Jan 26 19:23 agis_ddmendpoints.agis.ALL.json
[2026-01-26 21:29:44] -rw------- 1 boinc boinc       422 Jan 26 19:23 workernode_map.json
[2026-01-26 21:29:44] drwx------ 5 boinc boinc      4096 Jan 26 19:23 pilot3
[2026-01-26 21:29:44] -rw------- 1 boinc boinc 185169802 Jan 26 21:28 HITS.48317872._002196.pool.root.1
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc       530 Jan 26 21:28 boinc_task_state.xml
[2026-01-26 21:29:44] -rw------- 1 boinc boinc      1013 Jan 26 21:28 memory_monitor_summary.json
[2026-01-26 21:29:44] -rw------- 1 boinc boinc    301645 Jan 26 21:28 log.48317872._002196.job.log.tgz.1
[2026-01-26 21:29:44] -rw------- 1 boinc boinc      6298 Jan 26 21:28 heartbeat.json
[2026-01-26 21:29:44] -rw------- 1 boinc boinc        95 Jan 26 21:29 pilot_heartbeat.json
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc        27 Jan 26 21:29 wrapper_checkpoint.txt
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc      8192 Jan 26 21:29 boinc_mmap_file
[2026-01-26 21:29:44] -rw------- 1 boinc boinc      4819 Jan 26 21:29 pilotlog.txt
[2026-01-26 21:29:44] -rw------- 1 boinc boinc   1080013 Jan 26 21:29 log.48317872._002196.job.log.1
[2026-01-26 21:29:44] -rw------- 1 boinc boinc       357 Jan 26 21:29 output.list
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc       620 Jan 26 21:29 runtime_log
[2026-01-26 21:29:44] -rw------- 1 boinc boinc   1402880 Jan 26 21:29 result.tar.gz
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc      8916 Jan 26 21:29 runtime_log.err
[2026-01-26 21:29:44] -rw------- 1 boinc boinc       661 Jan 26 21:29 iIAMDmu9T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiD9KDmRZLfsn.diag
[2026-01-26 21:29:44] -rw-r--r-- 1 boinc boinc     12328 Jan 26 21:29 stderr.txt
[2026-01-26 21:29:44] HITS file was successfully produced:
[2026-01-26 21:29:44] -rw------- 1 boinc boinc 185169802 Jan 26 21:28 shared/HITS.pool.root.1
[2026-01-26 21:29:44]  *** Contents of shared directory: ***
[2026-01-26 21:29:44] total 673804
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc 502772542 Jan 26 19:23 ATLAS.root_0
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc    597751 Jan 26 19:23 input.tar.gz
[2026-01-26 21:29:44] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:23 start_atlas.sh
[2026-01-26 21:29:44] -rw------- 1 boinc boinc 185169802 Jan 26 21:28 HITS.pool.root.1
[2026-01-26 21:29:44] -rw------- 1 boinc boinc   1402880 Jan 26 21:29 result.tar.gz
21:29:45 (530779): run_atlas exited; CPU time 14645.587197
21:29:45 (530779): called boinc_finish(0)

</stderr_txt>
]]>

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