Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:25:31 (68314): wrapper (7.7.26015): starting
21:25:31 (68314): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 21:25:31] Arguments: --nthreads 4
[2026-01-26 21:25:31] Threads: 4
[2026-01-26 21:25:31] Checking for CVMFS
[2026-01-26 21:25:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 21:25:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 21:25:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 21:25:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 21:25:32] 2.9.2.0 2673010 8809 108680 155561 0 49 19975628 36864001 0 130560 0 4532943 99.988 281657 5899 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 21:25:32] CVMFS is ok
[2026-01-26 21:25:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 21:25:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 21:25:32] Further information can be found at the LHC@home message board.
[2026-01-26 21:25:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 21:25:32] Checking for apptainer binary...
[2026-01-26 21:25:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 21:25:32] Running /usr/bin/apptainer --version
[2026-01-26 21:25:32] apptainer version 1.4.1-1.1
[2026-01-26 21:25:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 21:25:32] thA315a
[2026-01-26 21:25:32] apptainer works
[2026-01-26 21:25:32] Set ATHENA_PROC_NUMBER=4
[2026-01-26 21:25:32] Set ATHENA_CORE_NUMBER=4
[2026-01-26 21:25:32] Starting ATLAS job with PandaID=6984043186
[2026-01-26 21:25:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 22:44:55]  *** The last 200 lines of the pilot log: ***
[2026-01-26 22:44:55] 2026-01-26 21:44:32,859 | INFO     | --------------------------------------------------
[2026-01-26 22:44:55] 2026-01-26 21:44:32,859 | INFO     | 
[2026-01-26 22:44:55] 2026-01-26 21:44:32,859 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-26 22:44:55] 2026-01-26 21:44:32,877 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | job 6984043186 has completed (purged errors)
[2026-01-26 22:44:55] 2026-01-26 21:44:32,878 | INFO     | overall cleanup function is called
[2026-01-26 22:44:55] 2026-01-26 21:44:33,885 | INFO     | --- collectZombieJob: --- 10, [76934]
[2026-01-26 22:44:55] 2026-01-26 21:44:33,885 | INFO     | zombie collector waiting for pid 76934
[2026-01-26 22:44:55] 2026-01-26 21:44:33,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 22:44:55] 2026-01-26 21:44:33,885 | INFO     | collected zombie processes
[2026-01-26 22:44:55] 2026-01-26 21:44:33,885 | INFO     | will attempt to kill all subprocesses of pid=76934
[2026-01-26 22:44:55] 2026-01-26 21:44:33,927 | INFO     | process IDs to be killed: [76934] (in reverse order)
[2026-01-26 22:44:55] 2026-01-26 21:44:33,958 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 22:44:55] 2026-01-26 21:44:33,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 22:44:55] 2026-01-26 21:44:33,960 | INFO     | did not find any defunct processes belonging to 76934
[2026-01-26 22:44:55] 2026-01-26 21:44:33,961 | INFO     | did not find any defunct processes belonging to 76934
[2026-01-26 22:44:55] 2026-01-26 21:44:33,961 | INFO     | ready for new job
[2026-01-26 22:44:55] 2026-01-26 21:44:33,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 22:44:55] 2026-01-26 21:44:33,962 | INFO     | **************************************
[2026-01-26 22:44:55] 2026-01-26 21:44:33,962 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 22:44:55] 2026-01-26 21:44:33,962 | INFO     | **************************************
[2026-01-26 22:44:55] 2026-01-26 21:44:33,962 | INFO     | 
[2026-01-26 22:44:55] 2026-01-26 21:44:33,962 | INFO     | architecture information:
[2026-01-26 22:44:55] 2026-01-26 21:44:33,963 | INFO     | executing command: cat /etc/os-release
[2026-01-26 22:44:55] 2026-01-26 21:44:33,975 | INFO     | cat /etc/os-release:
[2026-01-26 22:44:55] NAME="CentOS Linux"
[2026-01-26 22:44:55] VERSION="7 (Core)"
[2026-01-26 22:44:55] ID="centos"
[2026-01-26 22:44:55] ID_LIKE="rhel fedora"
[2026-01-26 22:44:55] VERSION_ID="7"
[2026-01-26 22:44:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 22:44:55] ANSI_COLOR="0;31"
[2026-01-26 22:44:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 22:44:55] HOME_URL="https://www.centos.org/"
[2026-01-26 22:44:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 22:44:55] 
[2026-01-26 22:44:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 22:44:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 22:44:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 22:44:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 22:44:55] 
[2026-01-26 22:44:55] 2026-01-26 21:44:33,976 | INFO     | **************************************
[2026-01-26 22:44:55] 2026-01-26 21:44:34,479 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 22:44:55] 2026-01-26 21:44:34,496 | INFO     | sufficient remaining disk space (236530434048 B)
[2026-01-26 22:44:55] 2026-01-26 21:44:34,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 22:44:55] 2026-01-26 21:44:34,496 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 22:44:55] 2026-01-26 21:44:34,496 | INFO     | update_server=False
[2026-01-26 22:44:55] 2026-01-26 21:44:34,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | INFO     | aborting loop
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 22:44:55] 2026-01-26 21:44:34,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 22:44:55] 2026-01-26 21:44:35,300 | INFO     | all payload control threads have been joined
[2026-01-26 22:44:55] 2026-01-26 21:44:35,502 | INFO     | [job] retrieve thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:35,502 | INFO     | [job] queue monitor thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:35,503 | INFO     | [job] job monitor thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:35,540 | INFO     | all data control threads have been joined
[2026-01-26 22:44:55] 2026-01-26 21:44:35,597 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:35,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 22:44:55] 2026-01-26 21:44:35,700 | INFO     | [data] copytool_in thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:35,804 | INFO     | all job control threads have been joined
[2026-01-26 22:44:55] 2026-01-26 21:44:35,967 | INFO     | [payload] validate_post thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,305 | INFO     | [payload] control thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,503 | INFO     | [data] copytool_out thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,546 | INFO     | [data] control thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,810 | INFO     | [job] control thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,883 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,900 | INFO     | [job] validate thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:36,988 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:37,071 | INFO     | [payload] failed_post thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:39,607 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:44,703 | INFO     | job.realtimelogging is not enabled
[2026-01-26 22:44:55] 2026-01-26 21:44:45,709 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 22:44:55] 2026-01-26 21:44:49,125 | INFO     | [monitor] cgroup control has ended
[2026-01-26 22:44:55] 2026-01-26 21:44:50,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324999432000)>', '<ExcThread(monitor, started 140324231968512)>']
[2026-01-26 22:44:55] 2026-01-26 21:44:51,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 22:44:55] 2026-01-26 21:44:51,588 | INFO     | [monitor] control thread has ended
[2026-01-26 22:44:55] 2026-01-26 21:44:55,804 | INFO     | all workflow threads have been joined
[2026-01-26 22:44:55] 2026-01-26 21:44:55,805 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 22:44:55] 2026-01-26 21:44:55,805 | INFO     | traces error code: 0
[2026-01-26 22:44:55] 2026-01-26 21:44:55,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 22:44:55] 2026-01-26 21:44:55,873 [wrapper] ==== pilot stdout END ====
[2026-01-26 22:44:55] 2026-01-26 21:44:55,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 22:44:55] 2026-01-26 21:44:55,880 [wrapper] pilotpid: 72426
[2026-01-26 22:44:55] 2026-01-26 21:44:55,884 [wrapper] Pilot exit status: 0
[2026-01-26 22:44:55] 2026-01-26 21:44:55,895 [wrapper] pandaids: 6984043186
[2026-01-26 22:44:55] 2026-01-26 21:44:55,915 [wrapper] cleanup supervisor_pilot   82083 72427
[2026-01-26 22:44:55] 2026-01-26 21:44:55,919 [wrapper] Test setup, not cleaning
[2026-01-26 22:44:55] 2026-01-26 21:44:55,922 [wrapper] apfmon messages muted
[2026-01-26 22:44:55] 2026-01-26 21:44:55,926 [wrapper] ==== wrapper stdout END ====
[2026-01-26 22:44:55] 2026-01-26 21:44:55,929 [wrapper] ==== wrapper stderr END ====
[2026-01-26 22:44:55]  *** Error codes and diagnostics ***
[2026-01-26 22:44:55]     "exeErrorCode": 0,
[2026-01-26 22:44:55]     "exeErrorDiag": "",
[2026-01-26 22:44:55]     "pilotErrorCode": 0,
[2026-01-26 22:44:55]     "pilotErrorDiag": "",
[2026-01-26 22:44:55]  *** Listing of results directory ***
[2026-01-26 22:44:55] total 725392
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc    584422 Jan 26 06:14 pilot3.tar.gz
[2026-01-26 22:44:55] -rwx------ 1 boinc boinc     36322 Jan 26 06:15 runpilot2-wrapper.sh
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc      5111 Jan 26 06:16 queuedata.json
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc       100 Jan 26 21:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 22:44:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 21:25 run_atlas
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc       105 Jan 26 21:25 job.xml
[2026-01-26 22:44:55] -rw-r--r-- 2 boinc boinc 533697414 Jan 26 21:25 EVNT.48317909._000014.pool.root.1
[2026-01-26 22:44:55] -rw-r--r-- 2 boinc boinc    597752 Jan 26 21:25 input.tar.gz
[2026-01-26 22:44:55] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:25 start_atlas.sh
[2026-01-26 22:44:55] drwxrwx--x 2 boinc boinc      4096 Jan 26 21:25 shared
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:25 boinc_setup_complete
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc      6371 Jan 26 21:25 init_data.xml
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc         0 Jan 26 21:25 boinc_lockfile
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc      2497 Jan 26 21:25 pandaJob.out
[2026-01-26 22:44:55] -rw------- 1 boinc boinc   1006457 Jan 26 21:25 agis_schedconf.cvmfs.json
[2026-01-26 22:44:55] -rw------- 1 boinc boinc   1516246 Jan 26 21:25 agis_ddmendpoints.agis.ALL.json
[2026-01-26 22:44:55] -rw------- 1 boinc boinc       428 Jan 26 21:25 workernode_map.json
[2026-01-26 22:44:55] drwx------ 5 boinc boinc      4096 Jan 26 21:25 pilot3
[2026-01-26 22:44:55] -rw------- 1 boinc boinc        95 Jan 26 22:44 pilot_heartbeat.json
[2026-01-26 22:44:55] -rw------- 1 boinc boinc 203240650 Jan 26 22:44 HITS.48317911._000535.pool.root.1
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc       530 Jan 26 22:44 boinc_task_state.xml
[2026-01-26 22:44:55] -rw------- 1 boinc boinc      1019 Jan 26 22:44 memory_monitor_summary.json
[2026-01-26 22:44:55] -rw------- 1 boinc boinc    267975 Jan 26 22:44 log.48317911._000535.job.log.tgz.1
[2026-01-26 22:44:55] -rw------- 1 boinc boinc      6313 Jan 26 22:44 heartbeat.json
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc      8192 Jan 26 22:44 boinc_mmap_file
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc        27 Jan 26 22:44 wrapper_checkpoint.txt
[2026-01-26 22:44:55] -rw------- 1 boinc boinc      4624 Jan 26 22:44 pilotlog.txt
[2026-01-26 22:44:55] -rw------- 1 boinc boinc    694099 Jan 26 22:44 log.48317911._000535.job.log.1
[2026-01-26 22:44:55] -rw------- 1 boinc boinc       357 Jan 26 22:44 output.list
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc       620 Jan 26 22:44 runtime_log
[2026-01-26 22:44:55] -rw------- 1 boinc boinc    983040 Jan 26 22:44 result.tar.gz
[2026-01-26 22:44:55] -rw------- 1 boinc boinc       658 Jan 26 22:44 vvHLDmv7T48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8B9KDmGdWoqn.diag
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc      8901 Jan 26 22:44 runtime_log.err
[2026-01-26 22:44:55] -rw-r--r-- 1 boinc boinc     13106 Jan 26 22:44 stderr.txt
[2026-01-26 22:44:55] HITS file was successfully produced:
[2026-01-26 22:44:55] -rw------- 1 boinc boinc 203240650 Jan 26 22:44 shared/HITS.pool.root.1
[2026-01-26 22:44:55]  *** Contents of shared directory: ***
[2026-01-26 22:44:56] total 721240
[2026-01-26 22:44:56] -rw-r--r-- 2 boinc boinc 533697414 Jan 26 21:25 ATLAS.root_0
[2026-01-26 22:44:56] -rw-r--r-- 2 boinc boinc    597752 Jan 26 21:25 input.tar.gz
[2026-01-26 22:44:56] -rw-r--r-- 2 boinc boinc     15845 Jan 26 21:25 start_atlas.sh
[2026-01-26 22:44:56] -rw------- 1 boinc boinc 203240650 Jan 26 22:44 HITS.pool.root.1
[2026-01-26 22:44:56] -rw------- 1 boinc boinc    983040 Jan 26 22:44 result.tar.gz
22:44:57 (68314): run_atlas exited; CPU time 17881.346193
22:44:57 (68314): called boinc_finish(0)

</stderr_txt>
]]>

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