Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:49:24 (30057): wrapper (7.7.26015): starting
04:49:24 (30057): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 04:49:24] Arguments: --nthreads 8
[2026-01-26 04:49:24] Threads: 8
[2026-01-26 04:49:24] Checking for CVMFS
[2026-01-26 04:49:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 04:49:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 04:49:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 04:49:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 04:49:24] 2.11.2.0 2466 205351 137716 155541 0 54 15028401 18432000 942 130560 0 135271689 99.980 7908187 29615 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 04:49:24] CVMFS is ok
[2026-01-26 04:49:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 04:49:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 04:49:24] Further information can be found at the LHC@home message board.
[2026-01-26 04:49:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 04:49:24] Checking for apptainer binary...
[2026-01-26 04:49:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 04:49:24] Running /usr/bin/apptainer --version
[2026-01-26 04:49:24] apptainer version 1.3.2-1.el7
[2026-01-26 04:49:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 04:49:24] c-206-20.aglt2.org
[2026-01-26 04:49:24] apptainer works
[2026-01-26 04:49:25] Set ATHENA_PROC_NUMBER=8
[2026-01-26 04:49:25] Set ATHENA_CORE_NUMBER=8
[2026-01-26 04:49:25] Starting ATLAS job with PandaID=6984043538
[2026-01-26 04:49:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:20:03 (30057): BOINC client no longer exists - exiting
06:20:03 (30057): timer handler: client dead, exiting
06:31:13 (13958): wrapper (7.7.26015): starting
06:31:13 (13958): wrapper: running run_atlas (--nthreads 8)
[2026-01-26 06:31:13] Arguments: --nthreads 8
[2026-01-26 06:31:13] Threads: 8
[2026-01-26 06:31:13] This job has been restarted, cleaning up previous attempt
[2026-01-26 06:31:13] Checking for CVMFS
[2026-01-26 06:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 06:31:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 06:31:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 06:31:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 06:31:14] 2.11.2.0 2466 205452 137284 155545 2 11 15051343 18432000 1 130560 0 135369743 99.980 7913326 29618 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-26 06:31:14] CVMFS is ok
[2026-01-26 06:31:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 06:31:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 06:31:14] Further information can be found at the LHC@home message board.
[2026-01-26 06:31:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 06:31:14] Checking for apptainer binary...
[2026-01-26 06:31:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 06:31:14] Running /usr/bin/apptainer --version
[2026-01-26 06:31:14] apptainer version 1.3.2-1.el7
[2026-01-26 06:31:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 06:31:15] c-206-20.aglt2.org
[2026-01-26 06:31:15] apptainer works
[2026-01-26 06:31:15] Set ATHENA_PROC_NUMBER=8
[2026-01-26 06:31:15] Set ATHENA_CORE_NUMBER=8
[2026-01-26 06:31:15] Starting ATLAS job with PandaID=6984043538
[2026-01-26 06:31:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 09:29:02]  *** The last 200 lines of the pilot log: ***
[2026-01-26 09:29:02] 2026-01-26 14:28:28,638 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-6984043538/jobReport.json
[2026-01-26 09:29:02] 2026-01-26 14:28:28,641 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-01-26 09:29:02] 2026-01-26 14:28:28,642 | INFO     | this job has now completed (state=finished)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,642 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,642 | INFO     | log transfer has been attempted: DONE
[2026-01-26 09:29:02] 2026-01-26 14:28:28,642 | INFO     | job 6984043538 has finished - writing final server update
[2026-01-26 09:29:02] 2026-01-26 14:28:28,643 | INFO     | total number of processed events: 400 (read)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,648 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6984043538/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,648 | INFO     | extracted standard info from prmon json
[2026-01-26 09:29:02] 2026-01-26 14:28:28,648 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 09:29:02] 2026-01-26 14:28:28,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 09:29:02] 2026-01-26 14:28:28,649 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 09:29:02] 2026-01-26 14:28:28,649 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 09:29:02] 2026-01-26 14:28:28,654 | INFO     | fitting pss+swap vs Time
[2026-01-26 09:29:02] 2026-01-26 14:28:28,655 | INFO     | sum of square deviations: 1633472487.5
[2026-01-26 09:29:02] 2026-01-26 14:28:28,656 | INFO     | sum of deviations: 12259579828.499987
[2026-01-26 09:29:02] 2026-01-26 14:28:28,656 | INFO     | mean x: 1769432387.5
[2026-01-26 09:29:02] 2026-01-26 14:28:28,657 | INFO     | mean y: 2498801.7298850575
[2026-01-26 09:29:02] 2026-01-26 14:28:28,657 | INFO     | intersect: -13277490773.662073
[2026-01-26 09:29:02] 2026-01-26 14:28:28,657 | INFO     | chi2: 1.3568944378287104
[2026-01-26 09:29:02] 2026-01-26 14:28:28,658 | INFO     | sum of square deviations: 1496660620.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,659 | INFO     | sum of deviations: 12145623135.999998
[2026-01-26 09:29:02] 2026-01-26 14:28:28,659 | INFO     | mean x: 1769432235.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,659 | INFO     | mean y: 2498674.674556213
[2026-01-26 09:29:02] 2026-01-26 14:28:28,660 | INFO     | intersect: -14356706614.63157
[2026-01-26 09:29:02] 2026-01-26 14:28:28,660 | INFO     | chi2: 1.357925600445755
[2026-01-26 09:29:02] 2026-01-26 14:28:28,660 | INFO     | current chi2=1.357925600445755 (change=-0.07599431380193124 %)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,660 | INFO     | right removable region: 168
[2026-01-26 09:29:02] 2026-01-26 14:28:28,661 | INFO     | sum of square deviations: 1496660620.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,662 | INFO     | sum of deviations: -13489459053.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,662 | INFO     | mean x: 1769432540.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,663 | INFO     | mean y: 2527162.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,663 | INFO     | intersect: 15950489897.450193
[2026-01-26 09:29:02] 2026-01-26 14:28:28,663 | INFO     | chi2: 0.018196017038362933
[2026-01-26 09:29:02] 2026-01-26 14:28:28,663 | INFO     | current chi2=0.018196017038362933 (change=98.6589953845282 %)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,664 | INFO     | sum of square deviations: 1367709365.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,665 | INFO     | sum of deviations: -13514701340.999998
[2026-01-26 09:29:02] 2026-01-26 14:28:28,665 | INFO     | mean x: 1769432692.5
[2026-01-26 09:29:02] 2026-01-26 14:28:28,666 | INFO     | mean y: 2527184.5853658537
[2026-01-26 09:29:02] 2026-01-26 14:28:28,666 | INFO     | intersect: 17486763963.309906
[2026-01-26 09:29:02] 2026-01-26 14:28:28,666 | INFO     | chi2: 0.016207590387022124
[2026-01-26 09:29:02] 2026-01-26 14:28:28,666 | INFO     | current chi2=0.016207590387022124 (change=10.927812647946963 %)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,667 | INFO     | left removable region: 20
[2026-01-26 09:29:02] 2026-01-26 14:28:28,667 | INFO     | sum of square deviations: 1005179777.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,668 | INFO     | sum of deviations: -11491817328.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,668 | INFO     | mean x: 1769432814.5
[2026-01-26 09:29:02] 2026-01-26 14:28:28,668 | INFO     | mean y: 2526267.0
[2026-01-26 09:29:02] 2026-01-26 14:28:28,669 | INFO     | intersect: 20231742118.40775
[2026-01-26 09:29:02] 2026-01-26 14:28:28,669 | INFO     | chi2: 0.014744431424128282
[2026-01-26 09:29:02] 2026-01-26 14:28:28,669 | INFO     | current memory leak: -11.43 B/s (using 148 data points, chi2=0.01)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,670 | INFO     | could have reported an average CPU frequency of 2267 MHz (9 samples)
[2026-01-26 09:29:02] 2026-01-26 14:28:28,670 | INFO     | ..............................
[2026-01-26 09:29:02] 2026-01-26 14:28:28,670 | INFO     | . Timing measurements:
[2026-01-26 09:29:02] 2026-01-26 14:28:28,670 | INFO     | . get job = 0 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . initial setup = 1 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . payload setup = 6 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . stage-in = 0 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . payload execution = 10595 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . stage-out = 2 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,671 | INFO     | . log creation = 0 s
[2026-01-26 09:29:02] 2026-01-26 14:28:28,672 | INFO     | ..............................
[2026-01-26 09:29:02] 2026-01-26 14:28:28,798 | INFO     | time since job start (10620s) is within the limit (349056.0s)
[2026-01-26 09:29:02] 2026-01-26 14:28:29,188 | INFO     | 
[2026-01-26 09:29:02] 2026-01-26 14:28:29,189 | INFO     | job summary report
[2026-01-26 09:29:02] 2026-01-26 14:28:29,189 | INFO     | --------------------------------------------------
[2026-01-26 09:29:02] 2026-01-26 14:28:29,189 | INFO     | PanDA job id: 6984043538
[2026-01-26 09:29:02] 2026-01-26 14:28:29,189 | INFO     | task id: 48310724
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | errors: (none)
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | pilot state: finished 
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | transexitcode: 0
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | exeerrorcode: 0
[2026-01-26 09:29:02] 2026-01-26 14:28:29,190 | INFO     | exeerrordiag: 
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | exitcode: 0
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | exitmsg: OK
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | cpuconsumptiontime: 81472 s
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | nevents: 400
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | neventsw: 0
[2026-01-26 09:29:02] 2026-01-26 14:28:29,191 | INFO     | pid: 32497
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | pgrp: 32497
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | corecount: 8
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | event service: False
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | sizes: {0: 2283993, 1: 2284199, 11: 2284227, 10605: 2312874, 10609: 2322130}
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | --------------------------------------------------
[2026-01-26 09:29:02] 2026-01-26 14:28:29,192 | INFO     | 
[2026-01-26 09:29:02] 2026-01-26 14:28:29,193 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-26 09:29:02] 2026-01-26 14:28:29,212 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,212 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 09:29:02] 2026-01-26 14:28:29,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,216 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 09:29:02] 2026-01-26 14:28:29,216 | INFO     | job 6984043538 has completed (purged errors)
[2026-01-26 09:29:02] 2026-01-26 14:28:29,216 | INFO     | overall cleanup function is called
[2026-01-26 09:29:02] 2026-01-26 14:28:29,996 | INFO     | PID=25411 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 09:29:02] 2026-01-26 14:28:29,996 | INFO     | .. there are 3 such processes running
[2026-01-26 09:29:02] 2026-01-26 14:28:30,224 | INFO     | --- collectZombieJob: --- 10, [32497]
[2026-01-26 09:29:02] 2026-01-26 14:28:30,224 | INFO     | zombie collector waiting for pid 32497
[2026-01-26 09:29:02] 2026-01-26 14:28:30,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 09:29:02] 2026-01-26 14:28:30,224 | INFO     | collected zombie processes
[2026-01-26 09:29:02] 2026-01-26 14:28:30,224 | INFO     | will attempt to kill all subprocesses of pid=32497
[2026-01-26 09:29:02] 2026-01-26 14:28:30,386 | INFO     | process IDs to be killed: [32497] (in reverse order)
[2026-01-26 09:29:02] 2026-01-26 14:28:30,446 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 09:29:02] 2026-01-26 14:28:30,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 09:29:02] 2026-01-26 14:28:30,453 | INFO     | did not find any defunct processes belonging to 32497
[2026-01-26 09:29:02] 2026-01-26 14:28:30,458 | INFO     | did not find any defunct processes belonging to 32497
[2026-01-26 09:29:02] 2026-01-26 14:28:30,458 | INFO     | ready for new job
[2026-01-26 09:29:02] 2026-01-26 14:28:30,458 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 09:29:02] 2026-01-26 14:28:30,460 | INFO     | **************************************
[2026-01-26 09:29:02] 2026-01-26 14:28:30,460 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 09:29:02] 2026-01-26 14:28:30,460 | INFO     | **************************************
[2026-01-26 09:29:02] 2026-01-26 14:28:30,461 | INFO     | 
[2026-01-26 09:29:02] 2026-01-26 14:28:30,462 | INFO     | architecture information:
[2026-01-26 09:29:02] 2026-01-26 14:28:30,462 | INFO     | executing command: cat /etc/os-release
[2026-01-26 09:29:02] 2026-01-26 14:28:30,477 | INFO     | cat /etc/os-release:
[2026-01-26 09:29:02] NAME="CentOS Linux"
[2026-01-26 09:29:02] VERSION="7 (Core)"
[2026-01-26 09:29:02] ID="centos"
[2026-01-26 09:29:02] ID_LIKE="rhel fedora"
[2026-01-26 09:29:02] VERSION_ID="7"
[2026-01-26 09:29:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 09:29:02] ANSI_COLOR="0;31"
[2026-01-26 09:29:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 09:29:02] HOME_URL="https://www.centos.org/"
[2026-01-26 09:29:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 09:29:02] 
[2026-01-26 09:29:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 09:29:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 09:29:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 09:29:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 09:29:02] 
[2026-01-26 09:29:02] 2026-01-26 14:28:30,477 | INFO     | **************************************
[2026-01-26 09:29:02] 2026-01-26 14:28:30,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-26 09:29:02] 2026-01-26 14:28:31,000 | INFO     | sufficient remaining disk space (26799505408 B)
[2026-01-26 09:29:02] 2026-01-26 14:28:31,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 09:29:02] 2026-01-26 14:28:31,001 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 09:29:02] 2026-01-26 14:28:31,001 | INFO     | update_server=False
[2026-01-26 09:29:02] 2026-01-26 14:28:31,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 09:29:02] 2026-01-26 14:28:31,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 09:29:02] 2026-01-26 14:28:31,295 | INFO     | all payload control threads have been joined
[2026-01-26 09:29:02] 2026-01-26 14:28:31,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 09:29:02] 2026-01-26 14:28:31,454 | INFO     | all data control threads have been joined
[2026-01-26 09:29:02] 2026-01-26 14:28:31,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:29:02] 2026-01-26 14:28:31,620 | INFO     | aborting loop
[2026-01-26 09:29:02] 2026-01-26 14:28:31,702 | INFO     | all job control threads have been joined
[2026-01-26 09:29:02] 2026-01-26 14:28:32,007 | INFO     | [job] retrieve thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,037 | INFO     | [job] validate thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,043 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,226 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,300 | INFO     | [payload] control thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,336 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,457 | INFO     | [data] control thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,626 | INFO     | [job] job monitor thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,707 | INFO     | [job] control thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:32,763 | INFO     | [payload] validate_post thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:33,076 | INFO     | [data] copytool_in thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:33,437 | INFO     | [data] copytool_out thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:33,573 | INFO     | [payload] failed_post thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:33,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 09:29:02] 2026-01-26 14:28:34,811 | INFO     | [job] queue monitor thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:35,008 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:41,692 | INFO     | job.realtimelogging is not enabled
[2026-01-26 09:29:02] 2026-01-26 14:28:42,697 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 09:29:02] 2026-01-26 14:28:45,349 | INFO     | [monitor] cgroup control has ended
[2026-01-26 09:29:02] 2026-01-26 14:28:46,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139826309248832)>', '<ExcThread(monitor, started 139825596323584)>']
[2026-01-26 09:29:02] 2026-01-26 14:28:51,069 | INFO     | all workflow threads have been joined
[2026-01-26 09:29:02] 2026-01-26 14:28:51,069 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 09:29:02] 2026-01-26 14:28:51,069 | INFO     | traces error code: 0
[2026-01-26 09:29:02] 2026-01-26 14:28:51,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 09:29:02] 2026-01-26 14:29:02,162 | INFO     | PID=25411 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-26 09:29:02] 2026-01-26 14:29:02,162 | INFO     | .. there are 3 such processes running
[2026-01-26 09:29:02] 2026-01-26 14:29:02,163 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 09:29:02] 2026-01-26 14:29:02,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 09:29:02] 2026-01-26 14:29:02,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 09:29:02] 2026-01-26 14:29:02,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 09:29:02] 2026-01-26 14:29:02,163 | INFO     | [monitor] control thread has ended
[2026-01-26 09:29:02] 2026-01-26 14:29:02,255 [wrapper] ==== pilot stdout END ====
[2026-01-26 09:29:02] 2026-01-26 14:29:02,257 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 09:29:02] 2026-01-26 14:29:02,260 [wrapper] pilotpid: 25411
[2026-01-26 09:29:02] 2026-01-26 14:29:02,262 [wrapper] Pilot exit status: 0
[2026-01-26 09:29:02] 2026-01-26 14:29:02,273 [wrapper] pandaids: 6984043538 6984043538
[2026-01-26 09:29:02] 2026-01-26 14:29:02,311 [wrapper] cleanup supervisor_pilot 19632 25413
[2026-01-26 09:29:02] 2026-01-26 14:29:02,313 [wrapper] Test setup, not cleaning
[2026-01-26 09:29:02] 2026-01-26 14:29:02,315 [wrapper] apfmon messages muted
[2026-01-26 09:29:02] 2026-01-26 14:29:02,317 [wrapper] ==== wrapper stdout END ====
[2026-01-26 09:29:02] 2026-01-26 14:29:02,319 [wrapper] ==== wrapper stderr END ====
[2026-01-26 09:29:02]  *** Error codes and diagnostics ***
[2026-01-26 09:29:02]     "exeErrorCode": 0,
[2026-01-26 09:29:02]     "exeErrorDiag": "",
[2026-01-26 09:29:02]     "pilotErrorCode": 0,
[2026-01-26 09:29:02]     "pilotErrorDiag": "",
[2026-01-26 09:29:02]  *** Listing of results directory ***
[2026-01-26 09:29:02] total 1166004
[2026-01-26 09:29:02] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas    584422 Jan 26 00:14 pilot3.tar.gz
[2026-01-26 09:29:02] -rwx------ 1 boincer umatlas     36322 Jan 26 00:15 runpilot2-wrapper.sh
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas      5111 Jan 26 00:16 queuedata.json
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas       100 Jan 26 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 09:29:02] -rwxr-xr-x 1 boincer umatlas      7986 Jan 26 04:49 run_atlas
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas       105 Jan 26 04:49 job.xml
[2026-01-26 09:29:02] -rw-r--r-- 3 boincer umatlas 501710509 Jan 26 04:49 EVNT.48310721._000038.pool.root.1
[2026-01-26 09:29:02] -rw-r--r-- 3 boincer umatlas 501710509 Jan 26 04:49 ATLAS.root_0
[2026-01-26 09:29:02] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 04:49 start_atlas.sh
[2026-01-26 09:29:02] drwxrwx--x 2 boincer umatlas      4096 Jan 26 04:49 shared
[2026-01-26 09:29:02] -rw-r--r-- 2 boincer umatlas    597776 Jan 26 04:49 input.tar.gz
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas         0 Jan 26 04:49 boinc_lockfile
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas      2532 Jan 26 06:31 pandaJob.out
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas        57 Jan 26 06:31 setup.sh.local
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas   1002189 Jan 26 06:31 agis_schedconf.cvmfs.json
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas       435 Jan 26 06:31 workernode_map.json
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas       532 Jan 26 09:27 boinc_task_state.xml
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas 182811749 Jan 26 09:27 HITS.48310724._010435.pool.root.1
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas      5953 Jan 26 09:28 init_data.xml
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas        96 Jan 26 09:28 pilot_heartbeat.json
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas      1046 Jan 26 09:28 memory_monitor_summary.json
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas   1516246 Jan 26 09:28 agis_ddmendpoints.agis.ALL.json
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas    414722 Jan 26 09:28 log.48310724._010435.job.log.tgz.1
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas      6408 Jan 26 09:28 heartbeat.json
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas      8192 Jan 26 09:28 boinc_mmap_file
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas        29 Jan 26 09:28 wrapper_checkpoint.txt
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas       820 Jan 26 09:29 pilotlog.txt
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas   1492681 Jan 26 09:29 log.48310724._010435.job.log.1
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas       357 Jan 26 09:29 output.list
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas       620 Jan 26 09:29 runtime_log
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas   1925120 Jan 26 09:29 result.tar.gz
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas      9427 Jan 26 09:29 runtime_log.err
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas       786 Jan 26 09:29 1byMDmo7T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHc2KDmKmBmam.diag
[2026-01-26 09:29:02] -rw-r--r-- 1 boincer umatlas     23535 Jan 26 09:29 stderr.txt
[2026-01-26 09:29:02] HITS file was successfully produced:
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas 182811749 Jan 26 09:27 shared/HITS.pool.root.1
[2026-01-26 09:29:02]  *** Contents of shared directory: ***
[2026-01-26 09:29:02] total 670968
[2026-01-26 09:29:02] -rw-r--r-- 3 boincer umatlas 501710509 Jan 26 04:49 ATLAS.root_0
[2026-01-26 09:29:02] -rw-r--r-- 2 boincer umatlas     15845 Jan 26 04:49 start_atlas.sh
[2026-01-26 09:29:02] -rw-r--r-- 2 boincer umatlas    597776 Jan 26 04:49 input.tar.gz
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas 182811749 Jan 26 09:27 HITS.pool.root.1
[2026-01-26 09:29:02] -rw------- 1 boincer umatlas   1925120 Jan 26 09:29 result.tar.gz
09:29:03 (13958): run_atlas exited; CPU time 81606.657719
09:29:03 (13958): called boinc_finish(0)

</stderr_txt>
]]>

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