Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
06:38:51 (487017): wrapper (7.7.26015): starting
06:38:51 (487017): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 06:38:51] Arguments: --nthreads 12
[2026-01-26 06:38:51] Threads: 12
[2026-01-26 06:38:51] Checking for CVMFS
[2026-01-26 06:38:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 06:38:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 06:38:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 06:38:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 06:38:52] 2.13.2.0 321610 117 48636 155545 2 188 16133511 16777217 916 130560 0 232423 99.989 5897 768 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-01-26 06:38:52] CVMFS is ok
[2026-01-26 06:38:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 06:38:52] Checking for apptainer binary...
[2026-01-26 06:38:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 06:38:52] Running /usr/bin/apptainer --version
[2026-01-26 06:38:52] apptainer version 1.3.0-bp160.1.36
[2026-01-26 06:38:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 06:38:53] boinc-runner
[2026-01-26 06:38:53] apptainer works
[2026-01-26 06:38:53] Set ATHENA_PROC_NUMBER=12
[2026-01-26 06:38:53] Set ATHENA_CORE_NUMBER=12
[2026-01-26 06:38:53] Starting ATLAS job with PandaID=6984048649
[2026-01-26 06:38:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 07:07:12]  *** The last 200 lines of the pilot log: ***
[2026-01-26 07:07:12]  is_tar=False
[2026-01-26 07:07:12]  lfn=log.48301086._010878.job.log.tgz.1
[2026-01-26 07:07:12]  mtime=0
[2026-01-26 07:07:12]  protocol_id=None
[2026-01-26 07:07:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 07:07:12]  replicas=None
[2026-01-26 07:07:12]  scope=mc23_13p6TeV
[2026-01-26 07:07:12]  status=None
[2026-01-26 07:07:12]  status_code=0
[2026-01-26 07:07:12]  storage_token=
[2026-01-26 07:07:12]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6984048649/log.48301086._010878.job.log.tgz.1
[2026-01-26 07:07:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/ff/log.48301086._010878.job.log.tgz.1
[2026-01-26 07:07:12]  workdir=None
[2026-01-26 07:07:12] ]
[2026-01-26 07:07:12] 2026-01-26 13:05:59,685 | INFO     | transferring file log.48301086._010878.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6984048649/log.48301086._010878.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-26 07:07:12] 2026-01-26 13:05:59,685 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6984048649/log.48301086._010878.job.log.tgz.1 /var/lib/boinc/slots/0/log.48301086._010878.job
[2026-01-26 07:07:12] 2026-01-26 13:05:59,694 | INFO     | adding to output.list: log.48301086._010878.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/ff/log.48301086._010878.job.log.tg
[2026-01-26 07:07:12] 2026-01-26 13:05:59,695 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 07:07:12] 2026-01-26 13:05:59,695 | INFO     | summary of transferred files:
[2026-01-26 07:07:12] 2026-01-26 13:05:59,695 | INFO     |  -- lfn=log.48301086._010878.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 07:07:12] 2026-01-26 13:05:59,695 | INFO     | stage-out finished correctly
[2026-01-26 07:07:12] 2026-01-26 13:06:00,198 | INFO     | PID=490946 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-26 07:07:12] 2026-01-26 13:06:01,199 | INFO     | time since job start (1617s) is within the limit (349056.0s)
[2026-01-26 07:07:12] 2026-01-26 13:06:02,692 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 07:07:12] 2026-01-26 13:06:03,203 | INFO     | time since job start (1619s) is within the limit (349056.0s)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,560 | WARNING  | process 495747 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 07:07:12] 2026-01-26 13:06:04,560 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984048649/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,604 | INFO     | number of running child processes to parent process 495747: 1
[2026-01-26 07:07:12] 2026-01-26 13:06:04,604 | INFO     | maximum number of monitored processes: 6
[2026-01-26 07:07:12] 2026-01-26 13:06:04,732 | INFO     | job 6984048649 has state=finished
[2026-01-26 07:07:12] 2026-01-26 13:06:04,732 | INFO     | preparing for final server update for job 6984048649 in state='finished'
[2026-01-26 07:07:12] 2026-01-26 13:06:04,732 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-6984048649/jobReport.json
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | this job has now completed (state=finished)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | log transfer has been attempted: DONE
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | job 6984048649 has finished - writing final server update
[2026-01-26 07:07:12] 2026-01-26 13:06:04,733 | INFO     | total number of processed events: 400 (read)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,735 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6984048649/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,735 | INFO     | extracted standard info from prmon json
[2026-01-26 07:07:12] 2026-01-26 13:06:04,735 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 07:07:12] 2026-01-26 13:06:04,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | fitting pss+swap vs Time
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | sum of square deviations: 2474465.0
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | sum of deviations: 90401634.0
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | mean x: 1769432046.5
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | mean y: 2835218.0
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | intersect: -64641258861.15003
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | chi2: 0.0002257762684063527
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | current memory leak: 36.53 B/s (using 20 data points, chi2=0.00)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,736 | INFO     | could have reported an average CPU frequency of 4193 MHz (4 samples)
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | ..............................
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . Timing measurements:
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . get job = 0 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . initial setup = 5 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . payload setup = 3 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . stage-in = 0 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . payload execution = 1597 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . stage-out = 0 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | . log creation = 0 s
[2026-01-26 07:07:12] 2026-01-26 13:06:04,737 | INFO     | ..............................
[2026-01-26 07:07:12] 2026-01-26 13:06:05,209 | INFO     | time since job start (1621s) is within the limit (349056.0s)
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | 
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | job summary report
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | --------------------------------------------------
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | PanDA job id: 6984048649
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | task id: 48301086
[2026-01-26 07:07:12] 2026-01-26 13:06:05,226 | INFO     | errors: (none)
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | pilot state: finished 
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | transexitcode: 0
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | exeerrorcode: 0
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | exeerrordiag: 
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | exitcode: 0
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | exitmsg: OK
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | cpuconsumptiontime: 16391 s
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | nevents: 400
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | neventsw: 0
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | pid: 495747
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | pgrp: 495747
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | corecount: 12
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | event service: False
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | sizes: {0: 2284029, 1: 2284235, 11: 2284263, 1604: 2309097, 1605: 2318095, 1608: 2318151, 1610: 2318473}
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | --------------------------------------------------
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | 
[2026-01-26 07:07:12] 2026-01-26 13:06:05,227 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,239 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 07:07:12] 2026-01-26 13:06:05,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,240 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 07:07:12] 2026-01-26 13:06:05,240 | INFO     | job 6984048649 has completed (purged errors)
[2026-01-26 07:07:12] 2026-01-26 13:06:05,240 | INFO     | overall cleanup function is called
[2026-01-26 07:07:12] 2026-01-26 13:06:06,247 | INFO     | --- collectZombieJob: --- 10, [495747]
[2026-01-26 07:07:12] 2026-01-26 13:06:06,247 | INFO     | zombie collector waiting for pid 495747
[2026-01-26 07:07:12] 2026-01-26 13:06:06,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 07:07:12] 2026-01-26 13:06:06,247 | INFO     | collected zombie processes
[2026-01-26 07:07:12] 2026-01-26 13:06:06,247 | INFO     | will attempt to kill all subprocesses of pid=495747
[2026-01-26 07:07:12] 2026-01-26 13:06:06,295 | INFO     | process IDs to be killed: [495747] (in reverse order)
[2026-01-26 07:07:12] 2026-01-26 13:06:06,323 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 07:07:12] 2026-01-26 13:06:06,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 07:07:12] 2026-01-26 13:06:06,325 | INFO     | did not find any defunct processes belonging to 495747
[2026-01-26 07:07:12] 2026-01-26 13:06:06,326 | INFO     | did not find any defunct processes belonging to 495747
[2026-01-26 07:07:12] 2026-01-26 13:06:06,326 | INFO     | ready for new job
[2026-01-26 07:07:12] 2026-01-26 13:06:06,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 07:07:12] 2026-01-26 13:06:06,327 | INFO     | **************************************
[2026-01-26 07:07:12] 2026-01-26 13:06:06,327 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 07:07:12] 2026-01-26 13:06:06,327 | INFO     | **************************************
[2026-01-26 07:07:12] 2026-01-26 13:06:06,327 | INFO     | 
[2026-01-26 07:07:12] 2026-01-26 13:06:06,328 | INFO     | architecture information:
[2026-01-26 07:07:12] 2026-01-26 13:06:06,328 | INFO     | executing command: cat /etc/os-release
[2026-01-26 07:07:12] 2026-01-26 13:06:06,332 | INFO     | cat /etc/os-release:
[2026-01-26 07:07:12] NAME="CentOS Linux"
[2026-01-26 07:07:12] VERSION="7 (Core)"
[2026-01-26 07:07:12] ID="centos"
[2026-01-26 07:07:12] ID_LIKE="rhel fedora"
[2026-01-26 07:07:12] VERSION_ID="7"
[2026-01-26 07:07:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 07:07:12] ANSI_COLOR="0;31"
[2026-01-26 07:07:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 07:07:12] HOME_URL="https://www.centos.org/"
[2026-01-26 07:07:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 07:07:12] 
[2026-01-26 07:07:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 07:07:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 07:07:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 07:07:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 07:07:12] 
[2026-01-26 07:07:12] 2026-01-26 13:06:06,332 | INFO     | **************************************
[2026-01-26 07:07:12] 2026-01-26 13:06:06,834 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-26 07:07:12] 2026-01-26 13:06:06,843 | INFO     | sufficient remaining disk space (3861436694528 B)
[2026-01-26 07:07:12] 2026-01-26 13:06:06,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | INFO     | update_server=False
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 07:07:12] 2026-01-26 13:06:06,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 07:07:12] 2026-01-26 13:06:07,106 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 07:07:12] 2026-01-26 13:06:07,106 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 07:07:12] 2026-01-26 13:06:07,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 07:07:12] 2026-01-26 13:06:07,106 | INFO     | will abort loop
[2026-01-26 07:07:12] 2026-01-26 13:06:07,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 07:07:12] 2026-01-26 13:06:07,848 | INFO     | [job] retrieve thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:07,880 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:07,941 | INFO     | all data control threads have been joined
[2026-01-26 07:07:12] 2026-01-26 13:06:07,962 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:07,980 | INFO     | all payload control threads have been joined
[2026-01-26 07:07:12] 2026-01-26 13:06:08,018 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,064 | INFO     | [data] copytool_in thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,111 | INFO     | [job] job monitor thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,186 | INFO     | all job control threads have been joined
[2026-01-26 07:07:12] 2026-01-26 13:06:08,413 | INFO     | [payload] validate_post thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,639 | INFO     | [payload] failed_post thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,729 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 07:07:12] 2026-01-26 13:06:08,946 | INFO     | [data] control thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:08,985 | INFO     | [payload] control thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:09,191 | INFO     | [job] control thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:09,237 | INFO     | [job] validate thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:09,328 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:09,740 | INFO     | [data] copytool_out thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:09,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 07:07:12] 2026-01-26 13:06:10,781 | INFO     | [job] queue monitor thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:06:12,734 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 07:07:12] 2026-01-26 13:07:06,530 | INFO     | [monitor] cgroup control has ended
[2026-01-26 07:07:12] 2026-01-26 13:07:06,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035493095232)>', '<ExcThread(monitor, started 140034640434944)>']
[2026-01-26 07:07:12] 2026-01-26 13:07:07,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 07:07:12] 2026-01-26 13:07:07,126 | INFO     | [monitor] control thread has ended
[2026-01-26 07:07:12] 2026-01-26 13:07:11,979 | INFO     | all workflow threads have been joined
[2026-01-26 07:07:12] 2026-01-26 13:07:11,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 07:07:12] 2026-01-26 13:07:11,979 | INFO     | traces error code: 0
[2026-01-26 07:07:12] 2026-01-26 13:07:11,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 07:07:12] 2026-01-26 13:07:12,029 [wrapper] ==== pilot stdout END ====
[2026-01-26 07:07:12] 2026-01-26 13:07:12,030 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 07:07:12] 2026-01-26 13:07:12,031 [wrapper] pilotpid: 490946
[2026-01-26 07:07:12] 2026-01-26 13:07:12,032 [wrapper] Pilot exit status: 0
[2026-01-26 07:07:12] 2026-01-26 13:07:12,036 [wrapper] pandaids: 6984048649
[2026-01-26 07:07:12] 2026-01-26 13:07:12,055 [wrapper] cleanup supervisor_pilot  511236 490947
[2026-01-26 07:07:12] 2026-01-26 13:07:12,056 [wrapper] Test setup, not cleaning
[2026-01-26 07:07:12] 2026-01-26 13:07:12,057 [wrapper] apfmon messages muted
[2026-01-26 07:07:12] 2026-01-26 13:07:12,058 [wrapper] ==== wrapper stdout END ====
[2026-01-26 07:07:12] 2026-01-26 13:07:12,059 [wrapper] ==== wrapper stderr END ====
[2026-01-26 07:07:12]  *** Error codes and diagnostics ***
[2026-01-26 07:07:12]     "exeErrorCode": 0,
[2026-01-26 07:07:12]     "exeErrorDiag": "",
[2026-01-26 07:07:12]     "pilotErrorCode": 0,
[2026-01-26 07:07:12]     "pilotErrorDiag": "",
[2026-01-26 07:07:12]  *** Listing of results directory ***
[2026-01-26 07:07:12] total 664148
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc    584422 Jan 25 23:14 pilot3.tar.gz
[2026-01-26 07:07:12] -rwx------. 1 boinc boinc     36322 Jan 25 23:15 runpilot2-wrapper.sh
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc      5111 Jan 25 23:16 queuedata.json
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc       100 Jan 26 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 07:07:12] -rwxr-xr-x. 1 boinc boinc      7986 Jan 26 06:38 run_atlas
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc       105 Jan 26 06:38 job.xml
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc 491025797 Jan 26 06:38 EVNT.48301084._000100.pool.root.1
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc     15845 Jan 26 06:38 start_atlas.sh
[2026-01-26 07:07:12] drwxrwx--x. 1 boinc boinc        76 Jan 26 06:38 shared
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc    597767 Jan 26 06:38 input.tar.gz
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc     10047 Jan 26 06:38 init_data.xml
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc         0 Jan 26 06:38 boinc_setup_complete
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc         0 Jan 26 06:38 boinc_lockfile
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc      2517 Jan 26 06:38 pandaJob.out
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc        63 Jan 26 06:38 setup.sh.local
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc   1002189 Jan 26 06:38 agis_schedconf.cvmfs.json
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc   1516246 Jan 26 06:39 agis_ddmendpoints.agis.ALL.json
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc       426 Jan 26 06:39 workernode_map.json
[2026-01-26 07:07:12] drwx------. 1 boinc boinc       414 Jan 26 06:39 pilot3
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc        95 Jan 26 07:05 pilot_heartbeat.json
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc       530 Jan 26 07:05 boinc_task_state.xml
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc 183919081 Jan 26 07:05 HITS.48301086._010878.pool.root.1
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc      1026 Jan 26 07:05 memory_monitor_summary.json
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc    335207 Jan 26 07:05 log.48301086._010878.job.log.tgz.1
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc      6331 Jan 26 07:06 heartbeat.json
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc        27 Jan 26 07:07 wrapper_checkpoint.txt
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc      8192 Jan 26 07:07 boinc_mmap_file
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc      4736 Jan 26 07:07 pilotlog.txt
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc    272624 Jan 26 07:07 log.48301086._010878.job.log.1
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc       357 Jan 26 07:07 output.list
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc       620 Jan 26 07:07 runtime_log
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc    624640 Jan 26 07:07 result.tar.gz
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc       650 Jan 26 07:07 tvFMDmo7T48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyb2KDmn2SDhm.diag
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc      9395 Jan 26 07:07 runtime_log.err
[2026-01-26 07:07:12] -rw-r--r--. 1 boinc boinc     21293 Jan 26 07:07 stderr.txt
[2026-01-26 07:07:12] HITS file was successfully produced:
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc 183919081 Jan 26 07:05 shared/HITS.pool.root.1
[2026-01-26 07:07:12]  *** Contents of shared directory: ***
[2026-01-26 07:07:12] total 660344
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc 491025797 Jan 26 06:38 ATLAS.root_0
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc     15845 Jan 26 06:38 start_atlas.sh
[2026-01-26 07:07:12] -rw-r--r--. 2 boinc boinc    597767 Jan 26 06:38 input.tar.gz
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc 183919081 Jan 26 07:05 HITS.pool.root.1
[2026-01-26 07:07:12] -rw-------. 1 boinc boinc    624640 Jan 26 07:07 result.tar.gz
07:07:13 (487017): run_atlas exited; CPU time 16399.654184
07:07:13 (487017): called boinc_finish(0)

</stderr_txt>
]]>

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