Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:06 (2024951): wrapper (7.7.26015): starting
19:16:06 (2024951): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 19:16:06] Arguments: --nthreads 3
[2026-01-26 19:16:06] Threads: 3
[2026-01-26 19:16:06] Checking for CVMFS
[2026-01-26 19:16:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 19:16:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 19:16:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 19:16:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 19:16:07] 2.9.2.0 1787703 1400 74704 155556 2 49 24803078 36864000 0 130560 0 678645 99.984 56107 4148 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 19:16:07] CVMFS is ok
[2026-01-26 19:16:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 19:16:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 19:16:07] Further information can be found at the LHC@home message board.
[2026-01-26 19:16:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 19:16:07] Checking for apptainer binary...
[2026-01-26 19:16:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 19:16:07] Running /usr/bin/apptainer --version
[2026-01-26 19:16:07] apptainer version 1.4.1-1.1
[2026-01-26 19:16:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 19:16:07] thA349
[2026-01-26 19:16:07] apptainer works
[2026-01-26 19:16:07] Set ATHENA_PROC_NUMBER=3
[2026-01-26 19:16:07] Set ATHENA_CORE_NUMBER=3
[2026-01-26 19:16:07] Starting ATLAS job with PandaID=6983327296
[2026-01-26 19:16:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 20:36:37]  *** The last 200 lines of the pilot log: ***
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | job 6983327296 has completed (purged errors)
[2026-01-26 20:36:37] 2026-01-26 19:36:05,995 | INFO     | overall cleanup function is called
[2026-01-26 20:36:37] 2026-01-26 19:36:07,002 | INFO     | --- collectZombieJob: --- 10, [2033412]
[2026-01-26 20:36:37] 2026-01-26 19:36:07,002 | INFO     | zombie collector waiting for pid 2033412
[2026-01-26 20:36:37] 2026-01-26 19:36:07,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 20:36:37] 2026-01-26 19:36:07,002 | INFO     | collected zombie processes
[2026-01-26 20:36:37] 2026-01-26 19:36:07,002 | INFO     | will attempt to kill all subprocesses of pid=2033412
[2026-01-26 20:36:37] 2026-01-26 19:36:07,042 | INFO     | process IDs to be killed: [2033412] (in reverse order)
[2026-01-26 20:36:37] 2026-01-26 19:36:07,065 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 20:36:37] 2026-01-26 19:36:07,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 20:36:37] 2026-01-26 19:36:07,066 | INFO     | did not find any defunct processes belonging to 2033412
[2026-01-26 20:36:37] 2026-01-26 19:36:07,067 | INFO     | did not find any defunct processes belonging to 2033412
[2026-01-26 20:36:37] 2026-01-26 19:36:07,067 | INFO     | ready for new job
[2026-01-26 20:36:37] 2026-01-26 19:36:07,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 20:36:37] 2026-01-26 19:36:07,068 | INFO     | **************************************
[2026-01-26 20:36:37] 2026-01-26 19:36:07,068 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 20:36:37] 2026-01-26 19:36:07,068 | INFO     | **************************************
[2026-01-26 20:36:37] 2026-01-26 19:36:07,068 | INFO     | 
[2026-01-26 20:36:37] 2026-01-26 19:36:07,069 | INFO     | architecture information:
[2026-01-26 20:36:37] 2026-01-26 19:36:07,069 | INFO     | executing command: cat /etc/os-release
[2026-01-26 20:36:37] 2026-01-26 19:36:07,077 | INFO     | cat /etc/os-release:
[2026-01-26 20:36:37] NAME="CentOS Linux"
[2026-01-26 20:36:37] VERSION="7 (Core)"
[2026-01-26 20:36:37] ID="centos"
[2026-01-26 20:36:37] ID_LIKE="rhel fedora"
[2026-01-26 20:36:37] VERSION_ID="7"
[2026-01-26 20:36:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 20:36:37] ANSI_COLOR="0;31"
[2026-01-26 20:36:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 20:36:37] HOME_URL="https://www.centos.org/"
[2026-01-26 20:36:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 20:36:37] 
[2026-01-26 20:36:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 20:36:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 20:36:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 20:36:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 20:36:37] 
[2026-01-26 20:36:37] 2026-01-26 19:36:07,077 | INFO     | **************************************
[2026-01-26 20:36:37] 2026-01-26 19:36:07,580 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-26 20:36:37] 2026-01-26 19:36:07,593 | INFO     | sufficient remaining disk space (277369323520 B)
[2026-01-26 20:36:37] 2026-01-26 19:36:07,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 20:36:37] 2026-01-26 19:36:07,593 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 20:36:37] 2026-01-26 19:36:07,593 | INFO     | update_server=False
[2026-01-26 20:36:37] 2026-01-26 19:36:07,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 20:36:37] 2026-01-26 19:36:07,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 20:36:37] 2026-01-26 19:36:07,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:36:37] 2026-01-26 19:36:07,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 20:36:37] 2026-01-26 19:36:07,710 | INFO     | all payload control threads have been joined
[2026-01-26 20:36:37] 2026-01-26 19:36:08,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 20:36:37] 2026-01-26 19:36:08,191 | INFO     | aborting loop
[2026-01-26 20:36:37] 2026-01-26 19:36:08,599 | INFO     | [job] retrieve thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,599 | INFO     | [job] queue monitor thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,665 | INFO     | all data control threads have been joined
[2026-01-26 20:36:37] 2026-01-26 19:36:08,693 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,716 | INFO     | [payload] control thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,765 | INFO     | [payload] validate_post thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,772 | INFO     | [data] copytool_in thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:08,960 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:09,197 | INFO     | [job] job monitor thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:09,281 | INFO     | all job control threads have been joined
[2026-01-26 20:36:37] 2026-01-26 19:36:09,397 | INFO     | [payload] failed_post thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:09,600 | INFO     | [data] copytool_out thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:09,671 | INFO     | [data] control thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:09,946 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:10,023 | INFO     | [job] validate thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:10,095 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:10,287 | INFO     | [job] control thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:11,601 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 20:36:37] 2026-01-26 19:36:22,403 | INFO     | [monitor] cgroup control has ended
[2026-01-26 20:36:37] 2026-01-26 19:36:23,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686532675392)>', '<ExcThread(monitor, started 140686175217408)>']
[2026-01-26 20:36:37] 2026-01-26 19:36:28,557 | INFO     | all workflow threads have been joined
[2026-01-26 20:36:37] 2026-01-26 19:36:28,557 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 20:36:37] 2026-01-26 19:36:28,558 | INFO     | traces error code: 0
[2026-01-26 20:36:37] 2026-01-26 19:36:28,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 20:36:37] 2026-01-26 19:36:37,785 | INFO     | PID=2028991 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 20:36:37] 2026-01-26 19:36:37,786 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 20:36:37] 2026-01-26 19:36:37,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 20:36:37] 2026-01-26 19:36:37,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 20:36:37] 2026-01-26 19:36:37,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 20:36:37] 2026-01-26 19:36:37,786 | INFO     | [monitor] control thread has ended
[2026-01-26 20:36:37] 2026-01-26 19:36:37,832 [wrapper] ==== pilot stdout END ====
[2026-01-26 20:36:37] 2026-01-26 19:36:37,835 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 20:36:37] 2026-01-26 19:36:37,837 [wrapper] pilotpid: 2028991
[2026-01-26 20:36:37] 2026-01-26 19:36:37,839 [wrapper] Pilot exit status: 0
[2026-01-26 20:36:37] 2026-01-26 19:36:37,846 [wrapper] pandaids: 6983327296
[2026-01-26 20:36:37] 2026-01-26 19:36:37,862 [wrapper] cleanup supervisor_pilot 2038552 2028992
[2026-01-26 20:36:37] 2026-01-26 19:36:37,864 [wrapper] Test setup, not cleaning
[2026-01-26 20:36:37] 2026-01-26 19:36:37,866 [wrapper] apfmon messages muted
[2026-01-26 20:36:37] 2026-01-26 19:36:37,869 [wrapper] ==== wrapper stdout END ====
[2026-01-26 20:36:37] 2026-01-26 19:36:37,871 [wrapper] ==== wrapper stderr END ====
[2026-01-26 20:36:37]  *** Error codes and diagnostics ***
[2026-01-26 20:36:37]     "exeErrorCode": 0,
[2026-01-26 20:36:37]     "exeErrorDiag": "",
[2026-01-26 20:36:37]     "pilotErrorCode": 0,
[2026-01-26 20:36:37]     "pilotErrorDiag": "",
[2026-01-26 20:36:37]  *** Listing of results directory ***
[2026-01-26 20:36:37] total 671484
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc    584422 Jan 25 19:47 pilot3.tar.gz
[2026-01-26 20:36:37] -rwx------ 1 boinc boinc     36322 Jan 25 19:49 runpilot2-wrapper.sh
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc      5111 Jan 25 19:50 queuedata.json
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc       100 Jan 26 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 20:36:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 19:16 run_atlas
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc       105 Jan 26 19:16 job.xml
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc 499843913 Jan 26 19:16 EVNT.48318032._000019.pool.root.1
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc    597758 Jan 26 19:16 input.tar.gz
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:16 start_atlas.sh
[2026-01-26 20:36:37] drwxrwx--x 2 boinc boinc      4096 Jan 26 19:16 shared
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:16 boinc_setup_complete
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc      6445 Jan 26 19:16 init_data.xml
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc         0 Jan 26 19:16 boinc_lockfile
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc      2530 Jan 26 19:16 pandaJob.out
[2026-01-26 20:36:37] -rw------- 1 boinc boinc   1006384 Jan 26 19:16 agis_schedconf.cvmfs.json
[2026-01-26 20:36:37] -rw------- 1 boinc boinc   1516246 Jan 26 19:16 agis_ddmendpoints.agis.ALL.json
[2026-01-26 20:36:37] -rw------- 1 boinc boinc       423 Jan 26 19:16 workernode_map.json
[2026-01-26 20:36:37] drwx------ 5 boinc boinc      4096 Jan 26 19:16 pilot3
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc       530 Jan 26 20:35 boinc_task_state.xml
[2026-01-26 20:36:37] -rw------- 1 boinc boinc 181898195 Jan 26 20:35 HITS.48318034._000921.pool.root.1
[2026-01-26 20:36:37] -rw------- 1 boinc boinc      1015 Jan 26 20:35 memory_monitor_summary.json
[2026-01-26 20:36:37] -rw------- 1 boinc boinc    259784 Jan 26 20:36 log.48318034._000921.job.log.tgz.1
[2026-01-26 20:36:37] -rw------- 1 boinc boinc      6295 Jan 26 20:36 heartbeat.json
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc        27 Jan 26 20:36 wrapper_checkpoint.txt
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc      8192 Jan 26 20:36 boinc_mmap_file
[2026-01-26 20:36:37] -rw------- 1 boinc boinc       747 Jan 26 20:36 pilotlog.txt
[2026-01-26 20:36:37] -rw------- 1 boinc boinc        95 Jan 26 20:36 pilot_heartbeat.json
[2026-01-26 20:36:37] -rw------- 1 boinc boinc    702836 Jan 26 20:36 log.48318034._000921.job.log.1
[2026-01-26 20:36:37] -rw------- 1 boinc boinc       357 Jan 26 20:36 output.list
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc       620 Jan 26 20:36 runtime_log
[2026-01-26 20:36:37] -rw------- 1 boinc boinc    983040 Jan 26 20:36 result.tar.gz
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc      8896 Jan 26 20:36 runtime_log.err
[2026-01-26 20:36:37] -rw------- 1 boinc boinc       657 Jan 26 20:36 cedKDmwLK48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKV1KDmwngdXo.diag
[2026-01-26 20:36:37] -rw-r--r-- 1 boinc boinc     12825 Jan 26 20:36 stderr.txt
[2026-01-26 20:36:37] HITS file was successfully produced:
[2026-01-26 20:36:37] -rw------- 1 boinc boinc 181898195 Jan 26 20:35 shared/HITS.pool.root.1
[2026-01-26 20:36:37]  *** Contents of shared directory: ***
[2026-01-26 20:36:37] total 667336
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc 499843913 Jan 26 19:16 ATLAS.root_0
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc    597758 Jan 26 19:16 input.tar.gz
[2026-01-26 20:36:37] -rw-r--r-- 2 boinc boinc     15845 Jan 26 19:16 start_atlas.sh
[2026-01-26 20:36:37] -rw------- 1 boinc boinc 181898195 Jan 26 20:35 HITS.pool.root.1
[2026-01-26 20:36:37] -rw------- 1 boinc boinc    983040 Jan 26 20:36 result.tar.gz
20:36:39 (2024951): run_atlas exited; CPU time 13623.223843
20:36:39 (2024951): called boinc_finish(0)

</stderr_txt>
]]>

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