Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:22 (2623382): wrapper (7.7.26015): starting
04:03:22 (2623382): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 04:03:22] Arguments: --nthreads 3
[2026-01-27 04:03:22] Threads: 3
[2026-01-27 04:03:22] Checking for CVMFS
[2026-01-27 04:03:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 04:03:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 04:03:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 04:03:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 04:03:23] 2.9.2.0 1281698 9276 94236 155569 2 50 18072175 36864001 0 130560 0 3930680 99.986 296272 5894 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 04:03:23] CVMFS is ok
[2026-01-27 04:03:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 04:03:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 04:03:23] Further information can be found at the LHC@home message board.
[2026-01-27 04:03:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 04:03:23] Checking for apptainer binary...
[2026-01-27 04:03:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 04:03:23] Running /usr/bin/apptainer --version
[2026-01-27 04:03:23] apptainer version 1.4.1-1.1
[2026-01-27 04:03:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 04:03:23] thA371a
[2026-01-27 04:03:23] apptainer works
[2026-01-27 04:03:23] Set ATHENA_PROC_NUMBER=3
[2026-01-27 04:03:23] Set ATHENA_CORE_NUMBER=3
[2026-01-27 04:03:23] Starting ATLAS job with PandaID=6983601946
[2026-01-27 04:03:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 07:33:54]  *** The last 200 lines of the pilot log: ***
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | job 6983601946 has completed (purged errors)
[2026-01-27 07:33:54] 2026-01-27 06:32:52,948 | INFO     | overall cleanup function is called
[2026-01-27 07:33:54] 2026-01-27 06:32:53,955 | INFO     | --- collectZombieJob: --- 10, [2631840]
[2026-01-27 07:33:54] 2026-01-27 06:32:53,955 | INFO     | zombie collector waiting for pid 2631840
[2026-01-27 07:33:54] 2026-01-27 06:32:53,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 07:33:54] 2026-01-27 06:32:53,955 | INFO     | collected zombie processes
[2026-01-27 07:33:54] 2026-01-27 06:32:53,955 | INFO     | will attempt to kill all subprocesses of pid=2631840
[2026-01-27 07:33:54] 2026-01-27 06:32:53,997 | INFO     | process IDs to be killed: [2631840] (in reverse order)
[2026-01-27 07:33:54] 2026-01-27 06:32:54,021 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 07:33:54] 2026-01-27 06:32:54,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 07:33:54] 2026-01-27 06:32:54,022 | INFO     | did not find any defunct processes belonging to 2631840
[2026-01-27 07:33:54] 2026-01-27 06:32:54,023 | INFO     | did not find any defunct processes belonging to 2631840
[2026-01-27 07:33:54] 2026-01-27 06:32:54,023 | INFO     | ready for new job
[2026-01-27 07:33:54] 2026-01-27 06:32:54,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 07:33:54] 2026-01-27 06:32:54,024 | INFO     | **************************************
[2026-01-27 07:33:54] 2026-01-27 06:32:54,024 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 07:33:54] 2026-01-27 06:32:54,024 | INFO     | **************************************
[2026-01-27 07:33:54] 2026-01-27 06:32:54,024 | INFO     | 
[2026-01-27 07:33:54] 2026-01-27 06:32:54,025 | INFO     | architecture information:
[2026-01-27 07:33:54] 2026-01-27 06:32:54,025 | INFO     | executing command: cat /etc/os-release
[2026-01-27 07:33:54] 2026-01-27 06:32:54,034 | INFO     | cat /etc/os-release:
[2026-01-27 07:33:54] NAME="CentOS Linux"
[2026-01-27 07:33:54] VERSION="7 (Core)"
[2026-01-27 07:33:54] ID="centos"
[2026-01-27 07:33:54] ID_LIKE="rhel fedora"
[2026-01-27 07:33:54] VERSION_ID="7"
[2026-01-27 07:33:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 07:33:54] ANSI_COLOR="0;31"
[2026-01-27 07:33:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 07:33:54] HOME_URL="https://www.centos.org/"
[2026-01-27 07:33:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 07:33:54] 
[2026-01-27 07:33:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 07:33:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 07:33:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 07:33:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 07:33:54] 
[2026-01-27 07:33:54] 2026-01-27 06:32:54,034 | INFO     | **************************************
[2026-01-27 07:33:54] 2026-01-27 06:32:54,537 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 07:33:54] 2026-01-27 06:32:54,550 | INFO     | sufficient remaining disk space (237245562880 B)
[2026-01-27 07:33:54] 2026-01-27 06:32:54,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 07:33:54] 2026-01-27 06:32:54,551 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 07:33:54] 2026-01-27 06:32:54,551 | INFO     | update_server=False
[2026-01-27 07:33:54] 2026-01-27 06:32:54,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 07:33:54] 2026-01-27 06:32:54,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:33:54] 2026-01-27 06:32:54,624 | INFO     | all data control threads have been joined
[2026-01-27 07:33:54] 2026-01-27 06:32:54,804 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-27 07:33:54] 2026-01-27 06:32:54,805 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-27 07:33:54] 2026-01-27 06:32:54,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 07:33:54] 2026-01-27 06:32:54,805 | INFO     | will abort loop
[2026-01-27 07:33:54] 2026-01-27 06:32:54,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 07:33:54] 2026-01-27 06:32:55,039 | INFO     | all job control threads have been joined
[2026-01-27 07:33:54] 2026-01-27 06:32:55,069 | INFO     | all payload control threads have been joined
[2026-01-27 07:33:54] 2026-01-27 06:32:55,556 | INFO     | [job] retrieve thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:55,556 | INFO     | [job] queue monitor thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:55,630 | INFO     | [data] control thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:55,704 | INFO     | [data] copytool_in thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:55,810 | INFO     | [job] job monitor thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:55,971 | INFO     | [payload] validate_post thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,045 | INFO     | [job] control thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,073 | INFO     | [payload] control thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 07:33:54] 2026-01-27 06:32:56,658 | INFO     | [payload] failed_post thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,842 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,911 | INFO     | [data] copytool_out thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,985 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:56,987 | INFO     | [job] validate thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:32:57,016 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:33:00,372 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:33:04,561 | INFO     | job.realtimelogging is not enabled
[2026-01-27 07:33:54] 2026-01-27 06:33:05,566 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 07:33:54] 2026-01-27 06:33:25,651 | INFO     | PID=2627420 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 07:33:54] 2026-01-27 06:33:25,651 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 07:33:54] 2026-01-27 06:33:25,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 07:33:54] 2026-01-27 06:33:25,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 07:33:54] 2026-01-27 06:33:30,909 [wrapper] supervise_pilot (15 min periods counter: 15)
[2026-01-27 07:33:54] 2026-01-27 06:33:49,275 | INFO     | [monitor] cgroup control has ended
[2026-01-27 07:33:54] 2026-01-27 06:33:49,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965942646592)>', '<ExcThread(monitor, started 139965434410752)>']
[2026-01-27 07:33:54] 2026-01-27 06:33:49,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 07:33:54] 2026-01-27 06:33:49,770 | INFO     | [monitor] control thread has ended
[2026-01-27 07:33:54] 2026-01-27 06:33:54,641 | INFO     | all workflow threads have been joined
[2026-01-27 07:33:54] 2026-01-27 06:33:54,641 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 07:33:54] 2026-01-27 06:33:54,642 | INFO     | traces error code: 0
[2026-01-27 07:33:54] 2026-01-27 06:33:54,643 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 07:33:54] 2026-01-27 06:33:54,692 [wrapper] ==== pilot stdout END ====
[2026-01-27 07:33:54] 2026-01-27 06:33:54,694 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 07:33:54] 2026-01-27 06:33:54,697 [wrapper] pilotpid: 2627420
[2026-01-27 07:33:54] 2026-01-27 06:33:54,699 [wrapper] Pilot exit status: 0
[2026-01-27 07:33:54] 2026-01-27 06:33:54,706 [wrapper] pandaids: 6983601946
[2026-01-27 07:33:54] 2026-01-27 06:33:54,722 [wrapper] cleanup supervisor_pilot 2638365 2627421
[2026-01-27 07:33:54] 2026-01-27 06:33:54,724 [wrapper] Test setup, not cleaning
[2026-01-27 07:33:54] 2026-01-27 06:33:54,727 [wrapper] apfmon messages muted
[2026-01-27 07:33:54] 2026-01-27 06:33:54,729 [wrapper] ==== wrapper stdout END ====
[2026-01-27 07:33:54] 2026-01-27 06:33:54,731 [wrapper] ==== wrapper stderr END ====
[2026-01-27 07:33:54]  *** Error codes and diagnostics ***
[2026-01-27 07:33:54]     "exeErrorCode": 0,
[2026-01-27 07:33:54]     "exeErrorDiag": "",
[2026-01-27 07:33:54]     "pilotErrorCode": 0,
[2026-01-27 07:33:54]     "pilotErrorDiag": "",
[2026-01-27 07:33:54]  *** Listing of results directory ***
[2026-01-27 07:33:54] total 480440
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:54 queuedata.json
[2026-01-27 07:33:54] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc       100 Jan 27 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 07:33:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 04:03 run_atlas
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc       105 Jan 27 04:03 job.xml
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc 274800482 Jan 27 04:03 EVNT.48329195._000002.pool.root.1
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc    597773 Jan 27 04:03 input.tar.gz
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:03 start_atlas.sh
[2026-01-27 07:33:54] drwxrwx--x 2 boinc boinc      4096 Jan 27 04:03 shared
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:03 boinc_setup_complete
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc      6440 Jan 27 04:03 init_data.xml
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc         0 Jan 27 04:03 boinc_lockfile
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc      2623 Jan 27 04:03 pandaJob.out
[2026-01-27 07:33:54] -rw------- 1 boinc boinc   1006425 Jan 27 04:03 agis_schedconf.cvmfs.json
[2026-01-27 07:33:54] -rw------- 1 boinc boinc       428 Jan 27 04:03 workernode_map.json
[2026-01-27 07:33:54] drwx------ 5 boinc boinc      4096 Jan 27 04:03 pilot3
[2026-01-27 07:33:54] -rw------- 1 boinc boinc 208954382 Jan 27 07:32 HITS.48329197._000042.pool.root.1
[2026-01-27 07:33:54] -rw------- 1 boinc boinc        95 Jan 27 07:32 pilot_heartbeat.json
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc       530 Jan 27 07:32 boinc_task_state.xml
[2026-01-27 07:33:54] -rw------- 1 boinc boinc      1020 Jan 27 07:32 memory_monitor_summary.json
[2026-01-27 07:33:54] -rw------- 1 boinc boinc   1516246 Jan 27 07:32 agis_ddmendpoints.agis.ALL.json
[2026-01-27 07:33:54] -rw------- 1 boinc boinc    365665 Jan 27 07:32 log.48329197._000042.job.log.tgz.1
[2026-01-27 07:33:54] -rw------- 1 boinc boinc      6317 Jan 27 07:32 heartbeat.json
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc      8192 Jan 27 07:33 boinc_mmap_file
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc        28 Jan 27 07:33 wrapper_checkpoint.txt
[2026-01-27 07:33:54] -rw------- 1 boinc boinc      5006 Jan 27 07:33 pilotlog.txt
[2026-01-27 07:33:54] -rw------- 1 boinc boinc   1776644 Jan 27 07:33 log.48329197._000042.job.log.1
[2026-01-27 07:33:54] -rw------- 1 boinc boinc       357 Jan 27 07:33 output.list
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc       620 Jan 27 07:33 runtime_log
[2026-01-27 07:33:54] -rw------- 1 boinc boinc   2160640 Jan 27 07:33 result.tar.gz
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc      8902 Jan 27 07:33 runtime_log.err
[2026-01-27 07:33:54] -rw------- 1 boinc boinc       661 Jan 27 07:33 IHGLDmQBO48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGX8KDmOe5ZWo.diag
[2026-01-27 07:33:54] -rw-r--r-- 1 boinc boinc     12042 Jan 27 07:33 stderr.txt
[2026-01-27 07:33:54] HITS file was successfully produced:
[2026-01-27 07:33:54] -rw------- 1 boinc boinc 208954382 Jan 27 07:32 shared/HITS.pool.root.1
[2026-01-27 07:33:54]  *** Contents of shared directory: ***
[2026-01-27 07:33:54] total 475140
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc 274800482 Jan 27 04:03 ATLAS.root_0
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc    597773 Jan 27 04:03 input.tar.gz
[2026-01-27 07:33:54] -rw-r--r-- 2 boinc boinc     15845 Jan 27 04:03 start_atlas.sh
[2026-01-27 07:33:54] -rw------- 1 boinc boinc 208954382 Jan 27 07:32 HITS.pool.root.1
[2026-01-27 07:33:54] -rw------- 1 boinc boinc   2160640 Jan 27 07:33 result.tar.gz
07:33:56 (2623382): run_atlas exited; CPU time 36761.396720
07:33:56 (2623382): called boinc_finish(0)

</stderr_txt>
]]>

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