Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:28:43 (1071400): wrapper (7.7.26015): starting
17:28:43 (1071400): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 17:28:43] Arguments: --nthreads 4
[2026-01-26 17:28:43] Threads: 4
[2026-01-26 17:28:43] Checking for CVMFS
[2026-01-26 17:28:43] No cvmfs_config command found, will try listing directly
[2026-01-26 17:28:43] CVMFS is ok
[2026-01-26 17:28:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 17:28:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 17:28:43] Further information can be found at the LHC@home message board.
[2026-01-26 17:28:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 17:28:43] Checking for apptainer binary...
[2026-01-26 17:28:43] which: no apptainer in ((null))
[2026-01-26 17:28:43] apptainer is not installed, using version from CVMFS
[2026-01-26 17:28:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 17:28:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-01-26 17:28:43] apptainer works
[2026-01-26 17:28:43] Set ATHENA_PROC_NUMBER=4
[2026-01-26 17:28:43] Set ATHENA_CORE_NUMBER=4
[2026-01-26 17:28:43] Starting ATLAS job with PandaID=6983601917
[2026-01-26 17:28:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:10:09 (1236149): wrapper (7.7.26015): starting
21:10:09 (1236149): wrapper: running run_atlas (--nthreads 4)
[2026-01-26 21:10:09] Arguments: --nthreads 4
[2026-01-26 21:10:09] Threads: 4
[2026-01-26 21:10:09] This job has been restarted, cleaning up previous attempt
[2026-01-26 21:10:09] Checking for CVMFS
[2026-01-26 21:10:09] No cvmfs_config command found, will try listing directly
[2026-01-26 21:10:09] CVMFS is ok
[2026-01-26 21:10:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 21:10:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 21:10:09] Further information can be found at the LHC@home message board.
[2026-01-26 21:10:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 21:10:09] Checking for apptainer binary...
[2026-01-26 21:10:09] which: no apptainer in ((null))
[2026-01-26 21:10:09] apptainer is not installed, using version from CVMFS
[2026-01-26 21:10:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 21:10:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-01-26 21:10:09] apptainer works
[2026-01-26 21:10:09] Set ATHENA_PROC_NUMBER=4
[2026-01-26 21:10:09] Set ATHENA_CORE_NUMBER=4
[2026-01-26 21:10:09] Starting ATLAS job with PandaID=6983601917
[2026-01-26 21:10:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 05:06:45]  *** The last 200 lines of the pilot log: ***
[2026-01-27 05:06:45] 2026-01-27 03:46:17,200 | INFO     | log transfer has been attempted: DONE
[2026-01-27 05:06:45] 2026-01-27 03:46:17,200 | INFO     | job 6983601917 has finished - writing final server update
[2026-01-27 05:06:45] 2026-01-27 03:46:17,200 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1232756/.job.ad'
[2026-01-27 05:06:45] 2026-01-27 03:46:17,201 | INFO     | total number of processed events: 400 (read)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,218 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6983601917/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,218 | INFO     | extracted standard info from prmon json
[2026-01-27 05:06:45] 2026-01-27 03:46:17,218 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 05:06:45] 2026-01-27 03:46:17,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 05:06:45] 2026-01-27 03:46:17,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 05:06:45] 2026-01-27 03:46:17,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 05:06:45] 2026-01-27 03:46:17,228 | INFO     | fitting pss+swap vs Time
[2026-01-27 05:06:45] 2026-01-27 03:46:17,229 | INFO     | sum of square deviations: 27881125552.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,234 | INFO     | sum of deviations: 20946061934.500008
[2026-01-27 05:06:45] 2026-01-27 03:46:17,234 | INFO     | mean x: 1769471877.5
[2026-01-27 05:06:45] 2026-01-27 03:46:17,234 | INFO     | mean y: 2347035.0915178573
[2026-01-27 05:06:45] 2026-01-27 03:46:17,234 | INFO     | intersect: -1326991964.0943427
[2026-01-27 05:06:45] 2026-01-27 03:46:17,235 | INFO     | chi2: 1.3248362905778073
[2026-01-27 05:06:45] 2026-01-27 03:46:17,235 | INFO     | sum of square deviations: 26957982662.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,240 | INFO     | sum of deviations: 20799630733.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,240 | INFO     | mean x: 1769471725.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,240 | INFO     | mean y: 2347010.9029345373
[2026-01-27 05:06:45] 2026-01-27 03:46:17,240 | INFO     | intersect: -1362901974.3026233
[2026-01-27 05:06:45] 2026-01-27 03:46:17,241 | INFO     | chi2: 1.324978189387948
[2026-01-27 05:06:45] 2026-01-27 03:46:17,241 | INFO     | current chi2=1.324978189387948 (change=-0.010710667510384918 %)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,241 | INFO     | right removable region: 442
[2026-01-27 05:06:45] 2026-01-27 03:46:17,242 | INFO     | sum of square deviations: 26957982662.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,246 | INFO     | sum of deviations: -34409152791.99999
[2026-01-27 05:06:45] 2026-01-27 03:46:17,247 | INFO     | mean x: 1769472030.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,247 | INFO     | mean y: 2356123.7787810382
[2026-01-27 05:06:45] 2026-01-27 03:46:17,247 | INFO     | intersect: 2260909154.4276733
[2026-01-27 05:06:45] 2026-01-27 03:46:17,247 | INFO     | chi2: 0.055206817868014325
[2026-01-27 05:06:45] 2026-01-27 03:46:17,248 | INFO     | current chi2=0.055206817868014325 (change=95.8329328490891 %)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,248 | INFO     | sum of square deviations: 26055444809.5
[2026-01-27 05:06:45] 2026-01-27 03:46:17,253 | INFO     | sum of deviations: -39998937293.49999
[2026-01-27 05:06:45] 2026-01-27 03:46:17,253 | INFO     | mean x: 1769472182.5
[2026-01-27 05:06:45] 2026-01-27 03:46:17,253 | INFO     | mean y: 2357065.7374429223
[2026-01-27 05:06:45] 2026-01-27 03:46:17,253 | INFO     | intersect: 2718756934.858245
[2026-01-27 05:06:45] 2026-01-27 03:46:17,254 | INFO     | chi2: 0.03629980945531897
[2026-01-27 05:06:45] 2026-01-27 03:46:17,254 | INFO     | current chi2=0.03629980945531897 (change=34.247596841928605 %)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,254 | INFO     | sum of square deviations: 25173279432.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,259 | INFO     | sum of deviations: -38607299671.99999
[2026-01-27 05:06:45] 2026-01-27 03:46:17,259 | INFO     | mean x: 1769472335.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,259 | INFO     | mean y: 2356824.766743649
[2026-01-27 05:06:45] 2026-01-27 03:46:17,259 | INFO     | intersect: 2716129135.7282567
[2026-01-27 05:06:45] 2026-01-27 03:46:17,260 | INFO     | chi2: 0.036269598922820064
[2026-01-27 05:06:45] 2026-01-27 03:46:17,260 | INFO     | current chi2=0.036269598922820064 (change=0.08322504429698073 %)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,260 | INFO     | left removable region: 30
[2026-01-27 05:06:45] 2026-01-27 03:46:17,261 | INFO     | sum of square deviations: 21685403803.0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,265 | INFO     | sum of deviations: -28557449113.500004
[2026-01-27 05:06:45] 2026-01-27 03:46:17,265 | INFO     | mean x: 1769472609.5
[2026-01-27 05:06:45] 2026-01-27 03:46:17,265 | INFO     | mean y: 2355165.240291262
[2026-01-27 05:06:45] 2026-01-27 03:46:17,265 | INFO     | intersect: 2332568817.823402
[2026-01-27 05:06:45] 2026-01-27 03:46:17,266 | INFO     | chi2: 0.033327675746842644
[2026-01-27 05:06:45] 2026-01-27 03:46:17,266 | INFO     | current memory leak: -1.32 B/s (using 412 data points, chi2=0.03)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | could have reported an average CPU frequency of 2566 MHz (19 samples)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | ..............................
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . Timing measurements:
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . get job = 0 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . initial setup = 1 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . payload setup = 6 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . stage-in = 0 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . payload execution = 27329 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . stage-out = 1 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,267 | INFO     | . log creation = 0 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,268 | INFO     | ..............................
[2026-01-27 05:06:45] 2026-01-27 03:46:17,375 | INFO     | 
[2026-01-27 05:06:45] 2026-01-27 03:46:17,375 | INFO     | job summary report
[2026-01-27 05:06:45] 2026-01-27 03:46:17,375 | INFO     | --------------------------------------------------
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | PanDA job id: 6983601917
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | task id: 48329197
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | errors: (none)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | pilot state: finished 
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | transexitcode: 0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | exeerrorcode: 0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | exeerrordiag: 
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | exitcode: 0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | exitmsg: OK
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | cpuconsumptiontime: 106321 s
[2026-01-27 05:06:45] 2026-01-27 03:46:17,376 | INFO     | nevents: 400
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | neventsw: 0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | pid: 1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | pgrp: 1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | corecount: 4
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | event service: False
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | sizes: {0: 2284382, 11: 2284382, 27339: 2321120, 27341: 2330196, 27344: 2330334}
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | --------------------------------------------------
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | 
[2026-01-27 05:06:45] 2026-01-27 03:46:17,377 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2026-01-27 05:06:45] 2026-01-27 03:46:17,399 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,401 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 05:06:45] 2026-01-27 03:46:17,402 | INFO     | job 6983601917 has completed (purged errors)
[2026-01-27 05:06:45] 2026-01-27 03:46:17,402 | INFO     | overall cleanup function is called
[2026-01-27 05:06:45] 2026-01-27 03:46:18,409 | INFO     | --- collectZombieJob: --- 10, [1242895]
[2026-01-27 05:06:45] 2026-01-27 03:46:18,409 | INFO     | zombie collector waiting for pid 1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:18,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 05:06:45] 2026-01-27 03:46:18,409 | INFO     | collected zombie processes
[2026-01-27 05:06:45] 2026-01-27 03:46:18,409 | INFO     | will attempt to kill all subprocesses of pid=1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:18,676 | INFO     | process IDs to be killed: [1242895] (in reverse order)
[2026-01-27 05:06:45] 2026-01-27 03:46:18,804 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 05:06:45] 2026-01-27 03:46:18,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 05:06:45] 2026-01-27 03:46:18,819 | INFO     | did not find any defunct processes belonging to 1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:18,833 | INFO     | did not find any defunct processes belonging to 1242895
[2026-01-27 05:06:45] 2026-01-27 03:46:18,834 | INFO     | ready for new job
[2026-01-27 05:06:45] 2026-01-27 03:46:18,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 05:06:45] 2026-01-27 03:46:18,837 | INFO     | **************************************
[2026-01-27 05:06:45] 2026-01-27 03:46:18,838 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 05:06:45] 2026-01-27 03:46:18,838 | INFO     | **************************************
[2026-01-27 05:06:45] 2026-01-27 03:46:18,838 | INFO     | 
[2026-01-27 05:06:45] 2026-01-27 03:46:18,842 | INFO     | architecture information:
[2026-01-27 05:06:45] 2026-01-27 03:46:18,842 | INFO     | executing command: cat /etc/os-release
[2026-01-27 05:06:45] 2026-01-27 03:46:18,861 | INFO     | cat /etc/os-release:
[2026-01-27 05:06:45] NAME="CentOS Linux"
[2026-01-27 05:06:45] VERSION="7 (Core)"
[2026-01-27 05:06:45] ID="centos"
[2026-01-27 05:06:45] ID_LIKE="rhel fedora"
[2026-01-27 05:06:45] VERSION_ID="7"
[2026-01-27 05:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 05:06:45] ANSI_COLOR="0;31"
[2026-01-27 05:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 05:06:45] HOME_URL="https://www.centos.org/"
[2026-01-27 05:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 05:06:45] 
[2026-01-27 05:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 05:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 05:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 05:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 05:06:45] 
[2026-01-27 05:06:45] 2026-01-27 03:46:18,861 | INFO     | **************************************
[2026-01-27 05:06:45] 2026-01-27 03:46:19,363 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2026-01-27 05:06:45] 2026-01-27 03:46:19,380 | INFO     | sufficient remaining disk space (667981709312 B)
[2026-01-27 05:06:45] 2026-01-27 03:46:19,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 05:06:45] 2026-01-27 03:46:19,381 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 05:06:45] 2026-01-27 03:46:19,381 | INFO     | update_server=False
[2026-01-27 05:06:45] 2026-01-27 03:46:19,381 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 05:06:45] 2026-01-27 03:46:19,381 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:06:45] 2026-01-27 03:46:19,842 | INFO     | all data control threads have been joined
[2026-01-27 05:06:45] 2026-01-27 03:46:20,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 05:06:45] 2026-01-27 03:46:20,274 | INFO     | aborting loop
[2026-01-27 05:06:45] 2026-01-27 03:46:20,294 | INFO     | all payload control threads have been joined
[2026-01-27 05:06:45] 2026-01-27 03:46:20,386 | INFO     | [job] queue monitor thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,386 | INFO     | [job] retrieve thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,497 | INFO     | [payload] validate_post thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,527 | INFO     | [data] copytool_in thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,576 | INFO     | [payload] failed_post thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,593 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 05:06:45] 2026-01-27 03:46:20,847 | INFO     | [data] control thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:20,960 | INFO     | all job control threads have been joined
[2026-01-27 05:06:45] 2026-01-27 03:46:21,078 | INFO     | [job] validate thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 05:06:45] 2026-01-27 03:46:21,269 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,279 | INFO     | [job] job monitor thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,299 | INFO     | [payload] control thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,533 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,533 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:21,965 | INFO     | [job] control thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:22,682 | INFO     | [data] copytool_out thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:25,275 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 05:06:45] 2026-01-27 03:46:49,992 | INFO     | PID=1240299 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 05:06:45] 2026-01-27 03:46:49,993 | INFO     | .. there are 6 such processes running
[2026-01-27 05:06:45] 2026-01-27 03:46:49,993 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 05:06:45] 2026-01-27 03:46:49,993 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 05:06:45] 2026-01-27 03:46:49,993 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 05:06:45] 2026-01-27 03:47:06,276 | INFO     | [monitor] cgroup control has ended
[2026-01-27 05:06:45] 2026-01-27 03:47:07,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22469487621952)>', '<ExcThread(monitor, started 22469043791616)>']
[2026-01-27 05:06:45] 2026-01-27 03:47:08,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 05:06:45] 2026-01-27 03:47:08,083 | INFO     | [monitor] control thread has ended
[2026-01-27 05:06:45] 2026-01-27 03:47:12,895 | INFO     | all workflow threads have been joined
[2026-01-27 05:06:45] 2026-01-27 03:47:12,895 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 05:06:45] 2026-01-27 03:47:12,895 | INFO     | traces error code: 0
[2026-01-27 05:06:45] 2026-01-27 03:47:12,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 05:06:45] 2026-01-27 03:47:13,074 [wrapper] ==== pilot stdout END ====
[2026-01-27 05:06:45] 2026-01-27 03:47:13,078 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 05:06:45] 2026-01-27 03:47:13,083 [wrapper] pilotpid: 1240299
[2026-01-27 05:06:45] 2026-01-27 03:47:13,085 [wrapper] Pilot exit status: 0
[2026-01-27 05:06:45] 2026-01-27 03:47:13,101 [wrapper] pandaids: 6983601917 6983601917
[2026-01-27 05:06:45] 2026-01-27 03:47:13,184 [wrapper] cleanup supervisor_pilot 1521152 1240300
[2026-01-27 05:06:45] 2026-01-27 03:47:13,187 [wrapper] Test setup, not cleaning
[2026-01-27 05:06:45] 2026-01-27 03:47:13,191 [wrapper] apfmon messages muted
[2026-01-27 05:06:45] 2026-01-27 03:47:13,194 [wrapper] ==== wrapper stdout END ====
[2026-01-27 05:06:45] 2026-01-27 03:47:13,197 [wrapper] ==== wrapper stderr END ====
[2026-01-27 05:06:45]  *** Error codes and diagnostics ***
[2026-01-27 05:06:45]     "exeErrorCode": 0,
[2026-01-27 05:06:45]     "exeErrorDiag": "",
[2026-01-27 05:06:45]     "pilotErrorCode": 0,
[2026-01-27 05:06:45]     "pilotErrorDiag": "",
[2026-01-27 05:06:45]  *** Listing of results directory ***
[2026-01-27 05:06:45] total 745116
[2026-01-27 05:06:45] drwx------ 5 boinc boinc      4096 Jan 14 11:00 pilot3
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:54 queuedata.json
[2026-01-27 05:06:45] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc       100 Jan 26 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 05:06:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 17:28 run_atlas
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc       105 Jan 26 17:28 job.xml
[2026-01-27 05:06:45] -rw-r--r-- 3 boinc boinc 271355227 Jan 26 17:28 EVNT.48329195._000001.pool.root.1
[2026-01-27 05:06:45] -rw-r--r-- 3 boinc boinc 271355227 Jan 26 17:28 ATLAS.root_0
[2026-01-27 05:06:45] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:28 start_atlas.sh
[2026-01-27 05:06:45] drwxrwx--x 2 boinc boinc      4096 Jan 26 17:28 shared
[2026-01-27 05:06:45] -rw-r--r-- 2 boinc boinc    597770 Jan 26 17:28 input.tar.gz
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc         0 Jan 26 17:28 boinc_lockfile
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc      2622 Jan 26 21:10 pandaJob.out
[2026-01-27 05:06:45] -rw------- 1 boinc boinc   1006449 Jan 26 21:10 agis_schedconf.cvmfs.json
[2026-01-27 05:06:45] -rw------- 1 boinc boinc       446 Jan 26 21:10 workernode_map.json
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc      6644 Jan 26 23:29 init_data.xml
[2026-01-27 05:06:45] -rw------- 1 boinc boinc 207546945 Jan 27 04:45 HITS.48329197._000013.pool.root.1
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc       530 Jan 27 04:45 boinc_task_state.xml
[2026-01-27 05:06:45] -rw------- 1 boinc boinc        96 Jan 27 04:46 pilot_heartbeat.json
[2026-01-27 05:06:45] -rw------- 1 boinc boinc      1038 Jan 27 04:46 memory_monitor_summary.json
[2026-01-27 05:06:45] -rw------- 1 boinc boinc   1516246 Jan 27 04:46 agis_ddmendpoints.agis.ALL.json
[2026-01-27 05:06:45] -rw------- 1 boinc boinc    584590 Jan 27 04:46 log.48329197._000013.job.log.tgz.1
[2026-01-27 05:06:45] -rw------- 1 boinc boinc      6388 Jan 27 04:46 heartbeat.json
[2026-01-27 05:06:45] -rw------- 1 boinc boinc      4829 Jan 27 04:47 pilotlog.txt
[2026-01-27 05:06:45] -rw------- 1 boinc boinc   3816255 Jan 27 04:47 log.48329197._000013.job.log.1
[2026-01-27 05:06:45] -rw------- 1 boinc boinc       357 Jan 27 04:47 output.list
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc       620 Jan 27 04:47 runtime_log
[2026-01-27 05:06:45] -rw------- 1 boinc boinc   4413440 Jan 27 04:47 result.tar.gz
[2026-01-27 05:06:45] -rw------- 1 boinc boinc       792 Jan 27 04:47 sCONDmPBO48n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzy1KDm2FXQOo.diag
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc      9282 Jan 27 04:47 runtime_log.err
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc        28 Jan 27 05:06 wrapper_checkpoint.txt
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc      8192 Jan 27 05:06 boinc_mmap_file
[2026-01-27 05:06:45] -rw-r--r-- 1 boinc boinc     22814 Jan 27 05:06 stderr.txt
[2026-01-27 05:06:45] HITS file was successfully produced:
[2026-01-27 05:06:45] -rw------- 1 boinc boinc 207546945 Jan 27 04:45 shared/HITS.pool.root.1
[2026-01-27 05:06:45]  *** Contents of shared directory: ***
[2026-01-27 05:06:45] total 472600
[2026-01-27 05:06:45] -rw-r--r-- 3 boinc boinc 271355227 Jan 26 17:28 ATLAS.root_0
[2026-01-27 05:06:45] -rw-r--r-- 2 boinc boinc     15845 Jan 26 17:28 start_atlas.sh
[2026-01-27 05:06:45] -rw-r--r-- 2 boinc boinc    597770 Jan 26 17:28 input.tar.gz
[2026-01-27 05:06:45] -rw------- 1 boinc boinc 207546945 Jan 27 04:45 HITS.pool.root.1
[2026-01-27 05:06:45] -rw------- 1 boinc boinc   4413440 Jan 27 04:47 result.tar.gz
05:06:47 (1236149): run_atlas exited; CPU time 107585.678251
05:06:47 (1236149): called boinc_finish(0)

</stderr_txt>
]]>

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