Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:21:00 (1149329): wrapper (7.7.26015): starting
00:21:00 (1149329): wrapper: running run_atlas (--nthreads 3)
[2026-01-27 00:21:00] Arguments: --nthreads 3
[2026-01-27 00:21:00] Threads: 3
[2026-01-27 00:21:00] Checking for CVMFS
[2026-01-27 00:21:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 00:21:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 00:21:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 00:21:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 00:21:01] 2.9.2.0 3955128 9010 87540 155566 2 49 16357139 36864001 0 130560 0 3965488 99.987 290158 5733 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 00:21:01] CVMFS is ok
[2026-01-27 00:21:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 00:21:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 00:21:01] Further information can be found at the LHC@home message board.
[2026-01-27 00:21:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 00:21:01] Checking for apptainer binary...
[2026-01-27 00:21:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 00:21:01] Running /usr/bin/apptainer --version
[2026-01-27 00:21:01] apptainer version 1.4.1-1.1
[2026-01-27 00:21:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 00:21:01] thA332
[2026-01-27 00:21:01] apptainer works
[2026-01-27 00:21:01] Set ATHENA_PROC_NUMBER=3
[2026-01-27 00:21:01] Set ATHENA_CORE_NUMBER=3
[2026-01-27 00:21:01] Starting ATLAS job with PandaID=6983466949
[2026-01-27 00:21:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 01:47:22]  *** The last 200 lines of the pilot log: ***
[2026-01-27 01:47:22] 2026-01-27 00:46:15,606 | INFO     | overall cleanup function is called
[2026-01-27 01:47:22] 2026-01-27 00:46:16,613 | INFO     | --- collectZombieJob: --- 10, [1157784]
[2026-01-27 01:47:22] 2026-01-27 00:46:16,613 | INFO     | zombie collector waiting for pid 1157784
[2026-01-27 01:47:22] 2026-01-27 00:46:16,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 01:47:22] 2026-01-27 00:46:16,613 | INFO     | collected zombie processes
[2026-01-27 01:47:22] 2026-01-27 00:46:16,613 | INFO     | will attempt to kill all subprocesses of pid=1157784
[2026-01-27 01:47:22] 2026-01-27 00:46:16,655 | INFO     | process IDs to be killed: [1157784] (in reverse order)
[2026-01-27 01:47:22] 2026-01-27 00:46:16,679 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 01:47:22] 2026-01-27 00:46:16,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 01:47:22] 2026-01-27 00:46:16,680 | INFO     | did not find any defunct processes belonging to 1157784
[2026-01-27 01:47:22] 2026-01-27 00:46:16,681 | INFO     | did not find any defunct processes belonging to 1157784
[2026-01-27 01:47:22] 2026-01-27 00:46:16,681 | INFO     | ready for new job
[2026-01-27 01:47:22] 2026-01-27 00:46:16,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 01:47:22] 2026-01-27 00:46:16,682 | INFO     | **************************************
[2026-01-27 01:47:22] 2026-01-27 00:46:16,682 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 01:47:22] 2026-01-27 00:46:16,682 | INFO     | **************************************
[2026-01-27 01:47:22] 2026-01-27 00:46:16,682 | INFO     | 
[2026-01-27 01:47:22] 2026-01-27 00:46:16,683 | INFO     | architecture information:
[2026-01-27 01:47:22] 2026-01-27 00:46:16,683 | INFO     | executing command: cat /etc/os-release
[2026-01-27 01:47:22] 2026-01-27 00:46:16,691 | INFO     | cat /etc/os-release:
[2026-01-27 01:47:22] NAME="CentOS Linux"
[2026-01-27 01:47:22] VERSION="7 (Core)"
[2026-01-27 01:47:22] ID="centos"
[2026-01-27 01:47:22] ID_LIKE="rhel fedora"
[2026-01-27 01:47:22] VERSION_ID="7"
[2026-01-27 01:47:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 01:47:22] ANSI_COLOR="0;31"
[2026-01-27 01:47:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 01:47:22] HOME_URL="https://www.centos.org/"
[2026-01-27 01:47:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 01:47:22] 
[2026-01-27 01:47:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 01:47:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 01:47:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 01:47:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 01:47:22] 
[2026-01-27 01:47:22] 2026-01-27 00:46:16,691 | INFO     | **************************************
[2026-01-27 01:47:22] 2026-01-27 00:46:17,195 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | INFO     | sufficient remaining disk space (239903703040 B)
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | INFO     | update_server=False
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:47:22] 2026-01-27 00:46:17,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 01:47:22] 2026-01-27 00:46:17,476 | INFO     | all payload control threads have been joined
[2026-01-27 01:47:22] 2026-01-27 00:46:17,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 01:47:22] 2026-01-27 00:46:17,651 | INFO     | aborting loop
[2026-01-27 01:47:22] 2026-01-27 00:46:18,074 | INFO     | all data control threads have been joined
[2026-01-27 01:47:22] 2026-01-27 00:46:18,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 01:47:22] 2026-01-27 00:46:18,214 | INFO     | [job] retrieve thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:18,214 | INFO     | [job] queue monitor thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:18,482 | INFO     | [payload] control thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:18,656 | INFO     | [job] job monitor thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:18,722 | INFO     | all job control threads have been joined
[2026-01-27 01:47:22] 2026-01-27 00:46:18,796 | INFO     | [payload] failed_post thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,080 | INFO     | [data] control thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,148 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,159 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,210 | INFO     | [job] validate thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,281 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,327 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,475 | INFO     | [data] copytool_in thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,476 | INFO     | [payload] validate_post thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:19,728 | INFO     | [job] control thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:20,117 | INFO     | [data] copytool_out thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:21,215 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 01:47:22] 2026-01-27 00:46:47,666 | INFO     | PID=1153365 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 01:47:22] 2026-01-27 00:46:47,666 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 01:47:22] 2026-01-27 00:46:47,666 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 01:47:22] 2026-01-27 00:46:47,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 01:47:22] 2026-01-27 00:47:15,525 | INFO     | [monitor] cgroup control has ended
[2026-01-27 01:47:22] 2026-01-27 00:47:17,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650934970176)>', '<ExcThread(monitor, started 139650324756224)>']
[2026-01-27 01:47:22] 2026-01-27 00:47:17,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 01:47:22] 2026-01-27 00:47:17,826 | INFO     | [monitor] control thread has ended
[2026-01-27 01:47:22] 2026-01-27 00:47:22,529 | INFO     | all workflow threads have been joined
[2026-01-27 01:47:22] 2026-01-27 00:47:22,530 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 01:47:22] 2026-01-27 00:47:22,530 | INFO     | traces error code: 0
[2026-01-27 01:47:22] 2026-01-27 00:47:22,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 01:47:22] 2026-01-27 00:47:22,581 [wrapper] ==== pilot stdout END ====
[2026-01-27 01:47:22] 2026-01-27 00:47:22,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 01:47:22] 2026-01-27 00:47:22,586 [wrapper] pilotpid: 1153365
[2026-01-27 01:47:22] 2026-01-27 00:47:22,588 [wrapper] Pilot exit status: 0
[2026-01-27 01:47:22] 2026-01-27 00:47:22,595 [wrapper] pandaids: 6983466949
[2026-01-27 01:47:22] 2026-01-27 00:47:22,611 [wrapper] cleanup supervisor_pilot 1162965 1153366
[2026-01-27 01:47:22] 2026-01-27 00:47:22,614 [wrapper] Test setup, not cleaning
[2026-01-27 01:47:22] 2026-01-27 00:47:22,616 [wrapper] apfmon messages muted
[2026-01-27 01:47:22] 2026-01-27 00:47:22,618 [wrapper] ==== wrapper stdout END ====
[2026-01-27 01:47:22] 2026-01-27 00:47:22,620 [wrapper] ==== wrapper stderr END ====
[2026-01-27 01:47:22]  *** Error codes and diagnostics ***
[2026-01-27 01:47:22]     "exeErrorCode": 0,
[2026-01-27 01:47:22]     "exeErrorDiag": "",
[2026-01-27 01:47:22]     "pilotErrorCode": 0,
[2026-01-27 01:47:22]     "pilotErrorDiag": "",
[2026-01-27 01:47:22]  *** Listing of results directory ***
[2026-01-27 01:47:22] total 673616
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc    584422 Jan 25 23:54 pilot3.tar.gz
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc      5111 Jan 25 23:54 queuedata.json
[2026-01-27 01:47:22] -rwx------ 1 boinc boinc     36322 Jan 25 23:54 runpilot2-wrapper.sh
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc       100 Jan 27 00:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 01:47:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 00:21 run_atlas
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc       105 Jan 27 00:21 job.xml
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc 500423168 Jan 27 00:21 EVNT.48318032._000034.pool.root.1
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc    597755 Jan 27 00:21 input.tar.gz
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:21 start_atlas.sh
[2026-01-27 01:47:22] drwxrwx--x 2 boinc boinc      4096 Jan 27 00:21 shared
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:21 boinc_setup_complete
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc      6439 Jan 27 00:21 init_data.xml
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc         0 Jan 27 00:21 boinc_lockfile
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc      2532 Jan 27 00:21 pandaJob.out
[2026-01-27 01:47:22] -rw------- 1 boinc boinc   1006441 Jan 27 00:21 agis_schedconf.cvmfs.json
[2026-01-27 01:47:22] -rw------- 1 boinc boinc   1516246 Jan 27 00:21 agis_ddmendpoints.agis.ALL.json
[2026-01-27 01:47:22] -rw------- 1 boinc boinc       426 Jan 27 00:21 workernode_map.json
[2026-01-27 01:47:22] drwx------ 5 boinc boinc      4096 Jan 27 00:21 pilot3
[2026-01-27 01:47:22] -rw------- 1 boinc boinc 183400824 Jan 27 01:45 HITS.48318034._001675.pool.root.1
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc       530 Jan 27 01:45 boinc_task_state.xml
[2026-01-27 01:47:22] -rw------- 1 boinc boinc      1032 Jan 27 01:46 memory_monitor_summary.json
[2026-01-27 01:47:22] -rw------- 1 boinc boinc    270236 Jan 27 01:46 log.48318034._001675.job.log.tgz.1
[2026-01-27 01:47:22] -rw------- 1 boinc boinc      6312 Jan 27 01:46 heartbeat.json
[2026-01-27 01:47:22] -rw------- 1 boinc boinc        95 Jan 27 01:46 pilot_heartbeat.json
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc        27 Jan 27 01:47 wrapper_checkpoint.txt
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc      8192 Jan 27 01:47 boinc_mmap_file
[2026-01-27 01:47:22] -rw------- 1 boinc boinc      4748 Jan 27 01:47 pilotlog.txt
[2026-01-27 01:47:22] -rw------- 1 boinc boinc    745463 Jan 27 01:47 log.48318034._001675.job.log.1
[2026-01-27 01:47:22] -rw------- 1 boinc boinc       357 Jan 27 01:47 output.list
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc       620 Jan 27 01:47 runtime_log
[2026-01-27 01:47:22] -rw------- 1 boinc boinc   1034240 Jan 27 01:47 result.tar.gz
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc      8896 Jan 27 01:47 runtime_log.err
[2026-01-27 01:47:22] -rw------- 1 boinc boinc       657 Jan 27 01:47 8M8NDm4AO48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWV8KDmYiKgUo.diag
[2026-01-27 01:47:22] -rw-r--r-- 1 boinc boinc     10704 Jan 27 01:47 stderr.txt
[2026-01-27 01:47:22] HITS file was successfully produced:
[2026-01-27 01:47:22] -rw------- 1 boinc boinc 183400824 Jan 27 01:45 shared/HITS.pool.root.1
[2026-01-27 01:47:22]  *** Contents of shared directory: ***
[2026-01-27 01:47:22] total 669420
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc 500423168 Jan 27 00:21 ATLAS.root_0
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc    597755 Jan 27 00:21 input.tar.gz
[2026-01-27 01:47:22] -rw-r--r-- 2 boinc boinc     15845 Jan 27 00:21 start_atlas.sh
[2026-01-27 01:47:22] -rw------- 1 boinc boinc 183400824 Jan 27 01:45 HITS.pool.root.1
[2026-01-27 01:47:22] -rw------- 1 boinc boinc   1034240 Jan 27 01:47 result.tar.gz
01:47:24 (1149329): run_atlas exited; CPU time 14711.877907
01:47:24 (1149329): called boinc_finish(0)

</stderr_txt>
]]>

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