Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:53:17 (2505645): wrapper (7.7.26015): starting
13:53:17 (2505645): wrapper: running run_atlas (--nthreads 12)
[2026-01-26 13:53:17] Arguments: --nthreads 12
[2026-01-26 13:53:17] Threads: 12
[2026-01-26 13:53:17] Checking for CVMFS
[2026-01-26 13:53:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 13:53:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 13:53:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 13:53:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 13:53:18] 2.13.3.0 3240885 3774 61592 155560 2 188 5320913 6144001 4457 130560 0 11267615 99.997 139706 328 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-26 13:53:18] CVMFS is ok
[2026-01-26 13:53:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 13:53:18] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-26 13:53:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-26 13:53:18] Further information can be found at the LHC@home message board.
[2026-01-26 13:53:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 13:53:18] Checking for apptainer binary...
[2026-01-26 13:53:18] apptainer is not installed, using version from CVMFS
[2026-01-26 13:53:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 13:53:19] XeonFire
[2026-01-26 13:53:19] apptainer works
[2026-01-26 13:53:19] Set ATHENA_PROC_NUMBER=12
[2026-01-26 13:53:19] Set ATHENA_CORE_NUMBER=12
[2026-01-26 13:53:19] Starting ATLAS job with PandaID=6983771742
[2026-01-26 13:53:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-26 15:13:00]  *** The last 200 lines of the pilot log: ***
[2026-01-26 15:13:00]  lfn=log.48318042._001564.job.log.tgz.1
[2026-01-26 15:13:00]  mtime=0
[2026-01-26 15:13:00]  protocol_id=None
[2026-01-26 15:13:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-26 15:13:00]  replicas=None
[2026-01-26 15:13:00]  scope=mc23_13p6TeV
[2026-01-26 15:13:00]  status=None
[2026-01-26 15:13:00]  status_code=0
[2026-01-26 15:13:00]  storage_token=
[2026-01-26 15:13:00]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/log.48318042._001564.job.log.tgz.1
[2026-01-26 15:13:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/2d/log.48318042._001564.job.log.tgz.1
[2026-01-26 15:13:00]  workdir=None
[2026-01-26 15:13:00] ]
[2026-01-26 15:13:00] 2026-01-26 21:12:06,730 | INFO     | transferring file log.48318042._001564.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/log.48318042._001564.job.log.tgz.1 to /var/lib/boinc
[2026-01-26 15:13:00] 2026-01-26 21:12:06,730 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/log.48318042._001564.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.483180
[2026-01-26 15:13:00] 2026-01-26 21:12:06,750 | INFO     | adding to output.list: log.48318042._001564.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/2d/log.48318042._001564.job.log.tg
[2026-01-26 15:13:00] 2026-01-26 21:12:06,751 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-26 15:13:00] 2026-01-26 21:12:06,751 | INFO     | summary of transferred files:
[2026-01-26 15:13:00] 2026-01-26 21:12:06,751 | INFO     |  -- lfn=log.48318042._001564.job.log.tgz.1, status_code=0, status=transferred
[2026-01-26 15:13:00] 2026-01-26 21:12:06,751 | INFO     | stage-out finished correctly
[2026-01-26 15:13:00] 2026-01-26 21:12:07,873 | INFO     | time since job start (4701s) is within the limit (349056.0s)
[2026-01-26 15:13:00] 2026-01-26 21:12:08,639 | WARNING  | process 2524024 can no longer be monitored (due to stat problems) - aborting
[2026-01-26 15:13:00] 2026-01-26 21:12:08,639 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 15:13:00] 2026-01-26 21:12:09,118 | INFO     | number of running child processes to parent process 2524024: 1
[2026-01-26 15:13:00] 2026-01-26 21:12:09,118 | INFO     | maximum number of monitored processes: 6
[2026-01-26 15:13:00] 2026-01-26 21:12:09,878 | INFO     | time since job start (4703s) is within the limit (349056.0s)
[2026-01-26 15:13:00] 2026-01-26 21:12:10,184 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-26 15:13:00] 2026-01-26 21:12:11,621 | INFO     | monitor loop #343: job 0:6983771742 is in state 'finished'
[2026-01-26 15:13:00] 2026-01-26 21:12:11,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,668 | INFO     | job 6983771742 has state=finished
[2026-01-26 15:13:00] 2026-01-26 21:12:11,668 | INFO     | preparing for final server update for job 6983771742 in state='finished'
[2026-01-26 15:13:00] 2026-01-26 21:12:11,668 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/jobReport.json
[2026-01-26 15:13:00] 2026-01-26 21:12:11,670 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-01-26 15:13:00] 2026-01-26 21:12:11,670 | INFO     | this job has now completed (state=finished)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,670 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,671 | INFO     | log transfer has been attempted: DONE
[2026-01-26 15:13:00] 2026-01-26 21:12:11,671 | INFO     | job 6983771742 has finished - writing final server update
[2026-01-26 15:13:00] 2026-01-26 21:12:11,671 | INFO     | total number of processed events: 400 (read)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,685 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6983771742/memory_monitor_summary.json (trf name=prmon)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,685 | INFO     | extracted standard info from prmon json
[2026-01-26 15:13:00] 2026-01-26 21:12:11,685 | INFO     | extracted standard memory fields from prmon json
[2026-01-26 15:13:00] 2026-01-26 21:12:11,686 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-26 15:13:00] 2026-01-26 21:12:11,686 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-26 15:13:00] 2026-01-26 21:12:11,686 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-26 15:13:00] 2026-01-26 21:12:11,688 | INFO     | fitting pss+swap vs Time
[2026-01-26 15:13:00] 2026-01-26 21:12:11,688 | INFO     | sum of square deviations: 106336877.5
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | sum of deviations: 5834063790.0
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | mean x: 1769459656.5
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | mean y: 2639143.742857143
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | intersect: -97076951234.98053
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | chi2: 0.4844022651792148
[2026-01-26 15:13:00] 2026-01-26 21:12:11,689 | INFO     | current memory leak: 54.86 B/s (using 70 data points, chi2=0.48)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | could have reported an average CPU frequency of 2628 MHz (6 samples)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | ..............................
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . Timing measurements:
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . get job = 0 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . initial setup = 18 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . payload setup = 5 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . stage-in = 0 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,690 | INFO     | . payload execution = 4679 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,691 | INFO     | . stage-out = 0 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,691 | INFO     | . log creation = 0 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,691 | INFO     | ..............................
[2026-01-26 15:13:00] 2026-01-26 21:12:11,756 | INFO     | 
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | job summary report
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | --------------------------------------------------
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | PanDA job id: 6983771742
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | task id: 48318042
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | errors: (none)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | pilot state: finished 
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | transexitcode: 0
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | exeerrorcode: 0
[2026-01-26 15:13:00] 2026-01-26 21:12:11,757 | INFO     | exeerrordiag: 
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | exitcode: 0
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | exitmsg: OK
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | cpuconsumptiontime: 48861 s
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | nevents: 400
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | neventsw: 0
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | pid: 2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | pgrp: 2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | corecount: 12
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | event service: False
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | sizes: {0: 2283996, 1: 2284258, 11: 2284286, 4688: 2310436, 4689: 2319448, 4693: 2319504, 4694: 2319826}
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | --------------------------------------------------
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | 
[2026-01-26 15:13:00] 2026-01-26 21:12:11,758 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,800 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-26 15:13:00] 2026-01-26 21:12:11,800 | INFO     | job 6983771742 has completed (purged errors)
[2026-01-26 15:13:00] 2026-01-26 21:12:11,800 | INFO     | overall cleanup function is called
[2026-01-26 15:13:00] 2026-01-26 21:12:12,806 | INFO     | --- collectZombieJob: --- 10, [2524024]
[2026-01-26 15:13:00] 2026-01-26 21:12:12,806 | INFO     | zombie collector waiting for pid 2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:12,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-26 15:13:00] 2026-01-26 21:12:12,807 | INFO     | collected zombie processes
[2026-01-26 15:13:00] 2026-01-26 21:12:12,807 | INFO     | will attempt to kill all subprocesses of pid=2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:13,133 | INFO     | process IDs to be killed: [2524024] (in reverse order)
[2026-01-26 15:13:00] 2026-01-26 21:12:13,282 | WARNING  | found no corresponding commands to process id(s)
[2026-01-26 15:13:00] 2026-01-26 21:12:13,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-26 15:13:00] 2026-01-26 21:12:13,289 | INFO     | did not find any defunct processes belonging to 2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:13,294 | INFO     | did not find any defunct processes belonging to 2524024
[2026-01-26 15:13:00] 2026-01-26 21:12:13,295 | INFO     | ready for new job
[2026-01-26 15:13:00] 2026-01-26 21:12:13,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-26 15:13:00] 2026-01-26 21:12:13,296 | INFO     | **************************************
[2026-01-26 15:13:00] 2026-01-26 21:12:13,296 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-26 15:13:00] 2026-01-26 21:12:13,296 | INFO     | **************************************
[2026-01-26 15:13:00] 2026-01-26 21:12:13,296 | INFO     | 
[2026-01-26 15:13:00] 2026-01-26 21:12:13,299 | INFO     | architecture information:
[2026-01-26 15:13:00] 2026-01-26 21:12:13,302 | INFO     | executing command: cat /etc/os-release
[2026-01-26 15:13:00] 2026-01-26 21:12:13,330 | INFO     | cat /etc/os-release:
[2026-01-26 15:13:00] NAME="CentOS Linux"
[2026-01-26 15:13:00] VERSION="7 (Core)"
[2026-01-26 15:13:00] ID="centos"
[2026-01-26 15:13:00] ID_LIKE="rhel fedora"
[2026-01-26 15:13:00] VERSION_ID="7"
[2026-01-26 15:13:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-26 15:13:00] ANSI_COLOR="0;31"
[2026-01-26 15:13:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-26 15:13:00] HOME_URL="https://www.centos.org/"
[2026-01-26 15:13:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-26 15:13:00] 
[2026-01-26 15:13:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-26 15:13:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-26 15:13:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-26 15:13:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-26 15:13:00] 
[2026-01-26 15:13:00] 2026-01-26 21:12:13,330 | INFO     | **************************************
[2026-01-26 15:13:00] 2026-01-26 21:12:13,831 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-26 15:13:00] 2026-01-26 21:12:13,853 | INFO     | sufficient remaining disk space (1662551851008 B)
[2026-01-26 15:13:00] 2026-01-26 21:12:13,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-26 15:13:00] 2026-01-26 21:12:13,854 | INFO     | current server update state: UPDATING_FINAL
[2026-01-26 15:13:00] 2026-01-26 21:12:13,854 | INFO     | update_server=False
[2026-01-26 15:13:00] 2026-01-26 21:12:13,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-26 15:13:00] 2026-01-26 21:12:14,125 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-26 15:13:00] 2026-01-26 21:12:14,125 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-26 15:13:00] 2026-01-26 21:12:14,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:13:00] 2026-01-26 21:12:14,126 | INFO     | will abort loop
[2026-01-26 15:13:00] 2026-01-26 21:12:14,449 | INFO     | all payload control threads have been joined
[2026-01-26 15:13:00] 2026-01-26 21:12:14,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-26 15:13:00] 2026-01-26 21:12:14,860 | INFO     | [job] retrieve thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:14,896 | INFO     | all data control threads have been joined
[2026-01-26 15:13:00] 2026-01-26 21:12:14,941 | INFO     | [payload] validate_post thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:14,996 | INFO     | all job control threads have been joined
[2026-01-26 15:13:00] 2026-01-26 21:12:15,032 | INFO     | [job] validate thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,131 | INFO     | [job] job monitor thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,262 | INFO     | [job] create_data_payload thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,332 | INFO     | [payload] validate_pre thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,456 | INFO     | [payload] control thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,546 | INFO     | [payload] execute_payloads thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,818 | INFO     | [data] copytool_in thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:15,901 | INFO     | [data] control thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:16,002 | INFO     | [job] control thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:16,068 | INFO     | [payload] failed_post thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:16,222 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:16,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-26 15:13:00] 2026-01-26 21:12:16,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-26 15:13:00] 2026-01-26 21:12:16,850 | INFO     | [data] copytool_out thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:17,771 | INFO     | [job] queue monitor thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:20,262 | INFO     | [data] queue_monitor thread has finished
[2026-01-26 15:13:00] 2026-01-26 21:12:43,317 | INFO     | PID=2509687 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-26 15:13:00] 2026-01-26 21:12:43,318 | INFO     | .. there are 5 such processes running
[2026-01-26 15:13:00] 2026-01-26 21:12:43,319 | INFO     | found 0 job(s) in 20 queues
[2026-01-26 15:13:00] 2026-01-26 21:12:43,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-26 15:13:00] 2026-01-26 21:12:43,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-26 15:13:00] 2026-01-26 21:12:53,293 | INFO     | [monitor] cgroup control has ended
[2026-01-26 15:13:00] 2026-01-26 21:12:55,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629190461248)>', '<ExcThread(monitor, started 140628436449024)>']
[2026-01-26 15:13:00] 2026-01-26 21:12:56,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-26 15:13:00] 2026-01-26 21:12:56,380 | INFO     | [monitor] control thread has ended
[2026-01-26 15:13:00] 2026-01-26 21:13:00,393 | INFO     | all workflow threads have been joined
[2026-01-26 15:13:00] 2026-01-26 21:13:00,393 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-26 15:13:00] 2026-01-26 21:13:00,393 | INFO     | traces error code: 0
[2026-01-26 15:13:00] 2026-01-26 21:13:00,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-26 15:13:00] 2026-01-26 21:13:00,500 [wrapper] ==== pilot stdout END ====
[2026-01-26 15:13:00] 2026-01-26 21:13:00,503 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-26 15:13:00] 2026-01-26 21:13:00,507 [wrapper] pilotpid: 2509687
[2026-01-26 15:13:00] 2026-01-26 21:13:00,510 [wrapper] Pilot exit status: 0
[2026-01-26 15:13:00] 2026-01-26 21:13:00,519 [wrapper] pandaids: 6983771742
[2026-01-26 15:13:00] 2026-01-26 21:13:00,570 [wrapper] cleanup supervisor_pilot 2573905 2509688
[2026-01-26 15:13:00] 2026-01-26 21:13:00,573 [wrapper] Test setup, not cleaning
[2026-01-26 15:13:00] 2026-01-26 21:13:00,578 [wrapper] apfmon messages muted
[2026-01-26 15:13:00] 2026-01-26 21:13:00,580 [wrapper] ==== wrapper stdout END ====
[2026-01-26 15:13:00] 2026-01-26 21:13:00,582 [wrapper] ==== wrapper stderr END ====
[2026-01-26 15:13:00]  *** Error codes and diagnostics ***
[2026-01-26 15:13:00]     "exeErrorCode": 0,
[2026-01-26 15:13:00]     "exeErrorDiag": "",
[2026-01-26 15:13:00]     "pilotErrorCode": 0,
[2026-01-26 15:13:00]     "pilotErrorDiag": "",
[2026-01-26 15:13:00]  *** Listing of results directory ***
[2026-01-26 15:13:00] total 666776
[2026-01-26 15:13:00] -rw-r--r-- 1 mark mark    584422 Jan 25 21:19 pilot3.tar.gz
[2026-01-26 15:13:00] -rwx------ 1 mark mark     36322 Jan 25 21:19 runpilot2-wrapper.sh
[2026-01-26 15:13:00] -rw-r--r-- 1 mark mark      5111 Jan 25 21:21 queuedata.json
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark       100 Jan 26 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-26 15:13:00] -rwxr-xr-x 1 mark mark      7986 Jan 26 13:53 run_atlas
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark       105 Jan 26 13:53 job.xml
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark 494789514 Jan 26 13:53 EVNT.48318040._000031.pool.root.1
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark     15845 Jan 26 13:53 start_atlas.sh
[2026-01-26 15:13:00] drwxrwx--x 2 mark mark      4096 Jan 26 13:53 shared
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark    597762 Jan 26 13:53 input.tar.gz
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark      9264 Jan 26 13:53 init_data.xml
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark         0 Jan 26 13:53 boinc_setup_complete
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark         0 Jan 26 13:53 boinc_lockfile
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark      2533 Jan 26 13:53 pandaJob.out
[2026-01-26 15:13:00] -rw------- 1 mark mark   1006449 Jan 26 13:53 agis_schedconf.cvmfs.json
[2026-01-26 15:13:00] -rw------- 1 mark mark   1516246 Jan 26 13:53 agis_ddmendpoints.agis.ALL.json
[2026-01-26 15:13:00] -rw------- 1 mark mark       432 Jan 26 13:53 workernode_map.json
[2026-01-26 15:13:00] drwx------ 5 mark mark      4096 Jan 26 13:53 pilot3
[2026-01-26 15:13:00] -rw------- 1 mark mark 181810341 Jan 26 15:11 HITS.48318042._001564.pool.root.1
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark       530 Jan 26 15:11 boinc_task_state.xml
[2026-01-26 15:13:00] -rw------- 1 mark mark      1044 Jan 26 15:12 memory_monitor_summary.json
[2026-01-26 15:13:00] -rw------- 1 mark mark    425107 Jan 26 15:12 log.48318042._001564.job.log.tgz.1
[2026-01-26 15:13:00] -rw------- 1 mark mark      6338 Jan 26 15:12 heartbeat.json
[2026-01-26 15:13:00] -rw------- 1 mark mark        95 Jan 26 15:12 pilot_heartbeat.json
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark      8192 Jan 26 15:12 boinc_mmap_file
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark        27 Jan 26 15:12 wrapper_checkpoint.txt
[2026-01-26 15:13:00] -rw------- 1 mark mark      5014 Jan 26 15:13 pilotlog.txt
[2026-01-26 15:13:00] -rw------- 1 mark mark    690400 Jan 26 15:13 log.48318042._001564.job.log.1
[2026-01-26 15:13:00] -rw------- 1 mark mark       357 Jan 26 15:13 output.list
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark       620 Jan 26 15:13 runtime_log
[2026-01-26 15:13:00] -rw------- 1 mark mark   1136640 Jan 26 15:13 result.tar.gz
[2026-01-26 15:13:00] -rw------- 1 mark mark       645 Jan 26 15:13 n7iLDmtJS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme18KDmZJsSyn.diag
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark      8886 Jan 26 15:13 runtime_log.err
[2026-01-26 15:13:00] -rw-rw-r-- 1 mark mark     21816 Jan 26 15:13 stderr.txt
[2026-01-26 15:13:00] HITS file was successfully produced:
[2026-01-26 15:13:00] -rw------- 1 mark mark 181810341 Jan 26 15:11 shared/HITS.pool.root.1
[2026-01-26 15:13:00]  *** Contents of shared directory: ***
[2026-01-26 15:13:00] total 662464
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark 494789514 Jan 26 13:53 ATLAS.root_0
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark     15845 Jan 26 13:53 start_atlas.sh
[2026-01-26 15:13:00] -rw-r--r-- 2 mark mark    597762 Jan 26 13:53 input.tar.gz
[2026-01-26 15:13:00] -rw------- 1 mark mark 181810341 Jan 26 15:11 HITS.pool.root.1
[2026-01-26 15:13:00] -rw------- 1 mark mark   1136640 Jan 26 15:13 result.tar.gz
15:13:03 (2505645): run_atlas exited; CPU time 49079.009549
15:13:03 (2505645): called boinc_finish(0)

</stderr_txt>
]]>

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