Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:14:28 (1374586): wrapper (7.7.26015): starting
23:14:28 (1374586): wrapper: running run_atlas (--nthreads 3)
[2026-01-26 23:14:28] Arguments: --nthreads 3
[2026-01-26 23:14:28] Threads: 3
[2026-01-26 23:14:28] Checking for CVMFS
[2026-01-26 23:14:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-26 23:14:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-26 23:14:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-26 23:14:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-26 23:14:28] 2.9.2.0 528218 4973 83080 155562 1 50 18612220 36864000 0 130560 0 2390498 99.986 185808 3517 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-26 23:14:28] CVMFS is ok
[2026-01-26 23:14:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-26 23:14:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-26 23:14:28] Further information can be found at the LHC@home message board.
[2026-01-26 23:14:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-26 23:14:28] Checking for apptainer binary...
[2026-01-26 23:14:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-26 23:14:28] Running /usr/bin/apptainer --version
[2026-01-26 23:14:28] apptainer version 1.4.1-1.1
[2026-01-26 23:14:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-26 23:14:28] atlasA091
[2026-01-26 23:14:28] apptainer works
[2026-01-26 23:14:28] Set ATHENA_PROC_NUMBER=3
[2026-01-26 23:14:28] Set ATHENA_CORE_NUMBER=3
[2026-01-26 23:14:28] Starting ATLAS job with PandaID=6983771958
[2026-01-26 23:14:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 00:41:59]  *** The last 200 lines of the pilot log: ***
[2026-01-27 00:41:59]  filetype=log
[2026-01-27 00:41:59]  guid=84d90547-5c84-45e8-9045-b82ba8a8472f
[2026-01-27 00:41:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-27 00:41:59]  is_altstaged=None
[2026-01-27 00:41:59]  is_tar=False
[2026-01-27 00:41:59]  lfn=log.48318042._001772.job.log.tgz.1
[2026-01-27 00:41:59]  mtime=0
[2026-01-27 00:41:59]  protocol_id=None
[2026-01-27 00:41:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-27 00:41:59]  replicas=None
[2026-01-27 00:41:59]  scope=mc23_13p6TeV
[2026-01-27 00:41:59]  status=None
[2026-01-27 00:41:59]  status_code=0
[2026-01-27 00:41:59]  storage_token=
[2026-01-27 00:41:59]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6983771958/log.48318042._001772.job.log.tgz.1
[2026-01-27 00:41:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/a2/log.48318042._001772.job.log.tgz.1
[2026-01-27 00:41:59]  workdir=None
[2026-01-27 00:41:59] ]
[2026-01-27 00:41:59] 2026-01-26 23:41:24,954 | INFO     | transferring file log.48318042._001772.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6983771958/log.48318042._001772.job.log.tgz.1 to /local/data/boinc/
[2026-01-27 00:41:59] 2026-01-26 23:41:24,954 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6983771958/log.48318042._001772.job.log.tgz.1 /local/data/boinc/slots/0/log.48318042._0017
[2026-01-27 00:41:59] 2026-01-26 23:41:24,968 | INFO     | adding to output.list: log.48318042._001772.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/a2/log.48318042._001772.job.log.tg
[2026-01-27 00:41:59] 2026-01-26 23:41:24,968 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-27 00:41:59] 2026-01-26 23:41:24,968 | INFO     | summary of transferred files:
[2026-01-27 00:41:59] 2026-01-26 23:41:24,968 | INFO     |  -- lfn=log.48318042._001772.job.log.tgz.1, status_code=0, status=transferred
[2026-01-27 00:41:59] 2026-01-26 23:41:24,968 | INFO     | stage-out finished correctly
[2026-01-27 00:41:59] 2026-01-26 23:41:25,679 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-27 00:41:59] 2026-01-26 23:41:26,517 | INFO     | time since job start (5208s) is within the limit (349056.0s)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,094 | INFO     | job 6983771958 has state=finished
[2026-01-27 00:41:59] 2026-01-26 23:41:27,094 | INFO     | preparing for final server update for job 6983771958 in state='finished'
[2026-01-27 00:41:59] 2026-01-26 23:41:27,094 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-6983771958/jobReport.json
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | this job has now completed (state=finished)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | log transfer has been attempted: DONE
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | job 6983771958 has finished - writing final server update
[2026-01-27 00:41:59] 2026-01-26 23:41:27,096 | INFO     | total number of processed events: 400 (read)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,097 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6983771958/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,098 | INFO     | extracted standard info from prmon json
[2026-01-27 00:41:59] 2026-01-26 23:41:27,098 | INFO     | extracted standard memory fields from prmon json
[2026-01-27 00:41:59] 2026-01-26 23:41:27,098 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-27 00:41:59] 2026-01-26 23:41:27,098 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-27 00:41:59] 2026-01-26 23:41:27,098 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | fitting pss+swap vs Time
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | sum of square deviations: 147126479.5
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | sum of deviations: 1208893028.4999998
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | mean x: 1769468348.5
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | mean y: 2351504.5256410255
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | intersect: -14536825657.346556
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | chi2: 0.0032163785286907485
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | current memory leak: 8.22 B/s (using 78 data points, chi2=0.00)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | could have reported an average CPU frequency of 3597 MHz (6 samples)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | ..............................
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | . Timing measurements:
[2026-01-27 00:41:59] 2026-01-26 23:41:27,099 | INFO     | . get job = 0 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . initial setup = 3 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . payload setup = 3 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . stage-in = 0 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . payload execution = 5187 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . stage-out = 0 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | . log creation = 0 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,100 | INFO     | ..............................
[2026-01-27 00:41:59] 2026-01-26 23:41:27,550 | INFO     | 
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | job summary report
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | --------------------------------------------------
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | PanDA job id: 6983771958
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | task id: 48318042
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | errors: (none)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | pilot state: finished 
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | transexitcode: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | exeerrorcode: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | exeerrordiag: 
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | exitcode: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | exitmsg: OK
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | cpuconsumptiontime: 14903 s
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | nevents: 400
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | neventsw: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | pid: 1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | pgrp: 1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | corecount: 3
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | event service: False
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | sizes: {0: 2284252, 11: 2284252, 5193: 2310809, 5194: 2310808, 5195: 2319868, 5196: 2319924, 5197: 2320246}
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | --------------------------------------------------
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | 
[2026-01-27 00:41:59] 2026-01-26 23:41:27,551 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | job 6983771958 has completed (purged errors)
[2026-01-27 00:41:59] 2026-01-26 23:41:27,569 | INFO     | overall cleanup function is called
[2026-01-27 00:41:59] 2026-01-26 23:41:28,576 | INFO     | --- collectZombieJob: --- 10, [1383047]
[2026-01-27 00:41:59] 2026-01-26 23:41:28,576 | INFO     | zombie collector waiting for pid 1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:28,576 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 00:41:59] 2026-01-26 23:41:28,576 | INFO     | collected zombie processes
[2026-01-27 00:41:59] 2026-01-26 23:41:28,576 | INFO     | will attempt to kill all subprocesses of pid=1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:28,638 | INFO     | process IDs to be killed: [1383047] (in reverse order)
[2026-01-27 00:41:59] 2026-01-26 23:41:28,664 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 00:41:59] 2026-01-26 23:41:28,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 00:41:59] 2026-01-26 23:41:28,669 | INFO     | did not find any defunct processes belonging to 1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:28,673 | INFO     | did not find any defunct processes belonging to 1383047
[2026-01-27 00:41:59] 2026-01-26 23:41:28,673 | INFO     | ready for new job
[2026-01-27 00:41:59] 2026-01-26 23:41:28,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 00:41:59] 2026-01-26 23:41:28,674 | INFO     | **************************************
[2026-01-27 00:41:59] 2026-01-26 23:41:28,674 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 00:41:59] 2026-01-26 23:41:28,674 | INFO     | **************************************
[2026-01-27 00:41:59] 2026-01-26 23:41:28,674 | INFO     | 
[2026-01-27 00:41:59] 2026-01-26 23:41:28,675 | INFO     | architecture information:
[2026-01-27 00:41:59] 2026-01-26 23:41:28,675 | INFO     | executing command: cat /etc/os-release
[2026-01-27 00:41:59] 2026-01-26 23:41:28,685 | INFO     | cat /etc/os-release:
[2026-01-27 00:41:59] NAME="CentOS Linux"
[2026-01-27 00:41:59] VERSION="7 (Core)"
[2026-01-27 00:41:59] ID="centos"
[2026-01-27 00:41:59] ID_LIKE="rhel fedora"
[2026-01-27 00:41:59] VERSION_ID="7"
[2026-01-27 00:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 00:41:59] ANSI_COLOR="0;31"
[2026-01-27 00:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 00:41:59] HOME_URL="https://www.centos.org/"
[2026-01-27 00:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 00:41:59] 
[2026-01-27 00:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 00:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 00:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 00:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 00:41:59] 
[2026-01-27 00:41:59] 2026-01-26 23:41:28,685 | INFO     | **************************************
[2026-01-27 00:41:59] 2026-01-26 23:41:28,688 | WARNING  | process 1383047 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 00:41:59] 2026-01-26 23:41:28,721 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 00:41:59] 2026-01-26 23:41:28,762 | INFO     | number of running child processes to parent process 1383047: 1
[2026-01-27 00:41:59] 2026-01-26 23:41:28,762 | INFO     | maximum number of monitored processes: 6
[2026-01-27 00:41:59] 2026-01-26 23:41:28,762 | INFO     | aborting job monitoring since job object (job id=6983771958) has expired
[2026-01-27 00:41:59] 2026-01-26 23:41:29,188 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | INFO     | sufficient remaining disk space (383016501248 B)
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | INFO     | update_server=False
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 00:41:59] 2026-01-26 23:41:29,202 | INFO     | will abort loop
[2026-01-27 00:41:59] 2026-01-26 23:41:30,041 | INFO     | all data control threads have been joined
[2026-01-27 00:41:59] 2026-01-26 23:41:30,135 | INFO     | all job control threads have been joined
[2026-01-27 00:41:59] 2026-01-26 23:41:30,199 | INFO     | all payload control threads have been joined
[2026-01-27 00:41:59] 2026-01-26 23:41:30,208 | INFO     | [job] retrieve thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:30,208 | INFO     | [job] job monitor thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:30,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 00:41:59] 2026-01-26 23:41:30,513 | INFO     | [data] copytool_in thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:30,555 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:30,916 | INFO     | [payload] validate_post thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,043 | INFO     | [data] control thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,141 | INFO     | [job] control thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,205 | INFO     | [payload] control thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,525 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,562 | INFO     | [payload] failed_post thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,577 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,618 | INFO     | [job] validate thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,659 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:31,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 00:41:59] 2026-01-26 23:41:32,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 00:41:59] 2026-01-26 23:41:32,514 | INFO     | [data] copytool_out thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:33,147 | INFO     | [job] queue monitor thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:35,724 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 00:41:59] 2026-01-26 23:41:44,983 | INFO     | [monitor] cgroup control has ended
[2026-01-27 00:41:59] 2026-01-26 23:41:45,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107215288128)>', '<ExcThread(monitor, started 140106589529856)>']
[2026-01-27 00:41:59] 2026-01-26 23:41:50,545 | INFO     | all workflow threads have been joined
[2026-01-27 00:41:59] 2026-01-26 23:41:50,546 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 00:41:59] 2026-01-26 23:41:50,546 | INFO     | traces error code: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:50,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | INFO     | PID=1378621 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 00:41:59] 2026-01-26 23:41:59,647 | INFO     | [monitor] control thread has ended
[2026-01-27 00:41:59] 2026-01-26 23:41:59,695 [wrapper] ==== pilot stdout END ====
[2026-01-27 00:41:59] 2026-01-26 23:41:59,698 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 00:41:59] 2026-01-26 23:41:59,700 [wrapper] pilotpid: 1378621
[2026-01-27 00:41:59] 2026-01-26 23:41:59,703 [wrapper] Pilot exit status: 0
[2026-01-27 00:41:59] 2026-01-26 23:41:59,710 [wrapper] pandaids: 6983771958
[2026-01-27 00:41:59] 2026-01-26 23:41:59,728 [wrapper] cleanup supervisor_pilot 1388385 1378622
[2026-01-27 00:41:59] 2026-01-26 23:41:59,731 [wrapper] Test setup, not cleaning
[2026-01-27 00:41:59] 2026-01-26 23:41:59,733 [wrapper] apfmon messages muted
[2026-01-27 00:41:59] 2026-01-26 23:41:59,736 [wrapper] ==== wrapper stdout END ====
[2026-01-27 00:41:59] 2026-01-26 23:41:59,738 [wrapper] ==== wrapper stderr END ====
[2026-01-27 00:41:59]  *** Error codes and diagnostics ***
[2026-01-27 00:41:59]     "exeErrorCode": 0,
[2026-01-27 00:41:59]     "exeErrorDiag": "",
[2026-01-27 00:41:59]     "pilotErrorCode": 0,
[2026-01-27 00:41:59]     "pilotErrorDiag": "",
[2026-01-27 00:41:59]  *** Listing of results directory ***
[2026-01-27 00:41:59] total 675976
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 00:41:59] -rwx------ 1 boinc boinc     36322 Jan 26 04:19 runpilot2-wrapper.sh
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:21 queuedata.json
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc       100 Jan 26 23:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 00:41:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 26 23:14 run_atlas
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc       105 Jan 26 23:14 job.xml
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc 501494860 Jan 26 23:14 EVNT.48318040._000036.pool.root.1
[2026-01-27 00:41:59] drwxrwx--x 2 boinc boinc      4096 Jan 26 23:14 shared
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc    597771 Jan 26 23:14 input.tar.gz
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc     15845 Jan 26 23:14 start_atlas.sh
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc         0 Jan 26 23:14 boinc_setup_complete
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc      6443 Jan 26 23:14 init_data.xml
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc         0 Jan 26 23:14 boinc_lockfile
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc      2532 Jan 26 23:14 pandaJob.out
[2026-01-27 00:41:59] -rw------- 1 boinc boinc   1006433 Jan 26 23:14 agis_schedconf.cvmfs.json
[2026-01-27 00:41:59] -rw------- 1 boinc boinc   1516246 Jan 26 23:14 agis_ddmendpoints.agis.ALL.json
[2026-01-27 00:41:59] -rw------- 1 boinc boinc       425 Jan 26 23:14 workernode_map.json
[2026-01-27 00:41:59] drwx------ 5 boinc boinc      4096 Jan 26 23:14 pilot3
[2026-01-27 00:41:59] -rw------- 1 boinc boinc        95 Jan 27 00:41 pilot_heartbeat.json
[2026-01-27 00:41:59] -rw------- 1 boinc boinc 184750114 Jan 27 00:41 HITS.48318042._001772.pool.root.1
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc       530 Jan 27 00:41 boinc_task_state.xml
[2026-01-27 00:41:59] -rw------- 1 boinc boinc      1016 Jan 27 00:41 memory_monitor_summary.json
[2026-01-27 00:41:59] -rw------- 1 boinc boinc    246640 Jan 27 00:41 log.48318042._001772.job.log.tgz.1
[2026-01-27 00:41:59] -rw------- 1 boinc boinc      6302 Jan 27 00:41 heartbeat.json
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc      8192 Jan 27 00:41 boinc_mmap_file
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc        27 Jan 27 00:41 wrapper_checkpoint.txt
[2026-01-27 00:41:59] -rw------- 1 boinc boinc       747 Jan 27 00:41 pilotlog.txt
[2026-01-27 00:41:59] -rw------- 1 boinc boinc    761001 Jan 27 00:41 log.48318042._001772.job.log.1
[2026-01-27 00:41:59] -rw------- 1 boinc boinc       357 Jan 27 00:41 output.list
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc       620 Jan 27 00:41 runtime_log
[2026-01-27 00:41:59] -rw------- 1 boinc boinc   1024000 Jan 27 00:41 result.tar.gz
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc      8911 Jan 27 00:41 runtime_log.err
[2026-01-27 00:41:59] -rw------- 1 boinc boinc       660 Jan 27 00:41 YaTMDm2JS48n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7R2KDmGgLS9m.diag
[2026-01-27 00:41:59] -rw-r--r-- 1 boinc boinc     21345 Jan 27 00:41 stderr.txt
[2026-01-27 00:41:59] HITS file was successfully produced:
[2026-01-27 00:41:59] -rw------- 1 boinc boinc 184750114 Jan 27 00:41 shared/HITS.pool.root.1
[2026-01-27 00:41:59]  *** Contents of shared directory: ***
[2026-01-27 00:41:59] total 671776
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc 501494860 Jan 26 23:14 ATLAS.root_0
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc    597771 Jan 26 23:14 input.tar.gz
[2026-01-27 00:41:59] -rw-r--r-- 2 boinc boinc     15845 Jan 26 23:14 start_atlas.sh
[2026-01-27 00:41:59] -rw------- 1 boinc boinc 184750114 Jan 27 00:41 HITS.pool.root.1
[2026-01-27 00:41:59] -rw------- 1 boinc boinc   1024000 Jan 27 00:41 result.tar.gz
00:42:00 (1374586): run_atlas exited; CPU time 14929.061345
00:42:00 (1374586): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN