Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:57 (736417): wrapper (7.7.26015): starting
01:57:57 (736417): wrapper: running run_atlas (--nthreads 4)
[2026-01-27 01:57:57] Arguments: --nthreads 4
[2026-01-27 01:57:57] Threads: 4
[2026-01-27 01:57:57] Checking for CVMFS
[2026-01-27 01:57:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-27 01:57:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-27 01:57:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-27 01:57:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-27 01:57:58] 2.9.2.0 4135 3243 95788 155567 1 49 29329321 36864001 0 130560 0 1673089 99.986 124156 3838 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-27 01:57:58] CVMFS is ok
[2026-01-27 01:57:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-27 01:57:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-27 01:57:58] Further information can be found at the LHC@home message board.
[2026-01-27 01:57:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-27 01:57:58] Checking for apptainer binary...
[2026-01-27 01:57:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-27 01:57:58] Running /usr/bin/apptainer --version
[2026-01-27 01:57:58] apptainer version 1.4.1-1.1
[2026-01-27 01:57:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-27 01:57:58] atlasA237
[2026-01-27 01:57:58] apptainer works
[2026-01-27 01:57:58] Set ATHENA_PROC_NUMBER=4
[2026-01-27 01:57:58] Set ATHENA_CORE_NUMBER=4
[2026-01-27 01:57:58] Starting ATLAS job with PandaID=6983772900
[2026-01-27 01:57:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-27 03:16:38]  *** The last 200 lines of the pilot log: ***
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-27 03:16:38] 2026-01-27 02:16:06,517 | INFO     | job 6983772900 has completed (purged errors)
[2026-01-27 03:16:38] 2026-01-27 02:16:06,518 | INFO     | overall cleanup function is called
[2026-01-27 03:16:38] 2026-01-27 02:16:07,524 | INFO     | --- collectZombieJob: --- 10, [745106]
[2026-01-27 03:16:38] 2026-01-27 02:16:07,524 | INFO     | zombie collector waiting for pid 745106
[2026-01-27 03:16:38] 2026-01-27 02:16:07,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-27 03:16:38] 2026-01-27 02:16:07,525 | INFO     | collected zombie processes
[2026-01-27 03:16:38] 2026-01-27 02:16:07,525 | INFO     | will attempt to kill all subprocesses of pid=745106
[2026-01-27 03:16:38] 2026-01-27 02:16:07,591 | INFO     | process IDs to be killed: [745106] (in reverse order)
[2026-01-27 03:16:38] 2026-01-27 02:16:07,632 | WARNING  | found no corresponding commands to process id(s)
[2026-01-27 03:16:38] 2026-01-27 02:16:07,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-27 03:16:38] 2026-01-27 02:16:07,635 | INFO     | did not find any defunct processes belonging to 745106
[2026-01-27 03:16:38] 2026-01-27 02:16:07,637 | INFO     | did not find any defunct processes belonging to 745106
[2026-01-27 03:16:38] 2026-01-27 02:16:07,637 | INFO     | ready for new job
[2026-01-27 03:16:38] 2026-01-27 02:16:07,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-27 03:16:38] 2026-01-27 02:16:07,638 | INFO     | **************************************
[2026-01-27 03:16:38] 2026-01-27 02:16:07,638 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-27 03:16:38] 2026-01-27 02:16:07,638 | INFO     | **************************************
[2026-01-27 03:16:38] 2026-01-27 02:16:07,638 | INFO     | 
[2026-01-27 03:16:38] 2026-01-27 02:16:07,639 | INFO     | architecture information:
[2026-01-27 03:16:38] 2026-01-27 02:16:07,639 | INFO     | executing command: cat /etc/os-release
[2026-01-27 03:16:38] 2026-01-27 02:16:07,653 | INFO     | cat /etc/os-release:
[2026-01-27 03:16:38] NAME="CentOS Linux"
[2026-01-27 03:16:38] VERSION="7 (Core)"
[2026-01-27 03:16:38] ID="centos"
[2026-01-27 03:16:38] ID_LIKE="rhel fedora"
[2026-01-27 03:16:38] VERSION_ID="7"
[2026-01-27 03:16:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-27 03:16:38] ANSI_COLOR="0;31"
[2026-01-27 03:16:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-27 03:16:38] HOME_URL="https://www.centos.org/"
[2026-01-27 03:16:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-27 03:16:38] 
[2026-01-27 03:16:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-27 03:16:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-27 03:16:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-27 03:16:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-27 03:16:38] 
[2026-01-27 03:16:38] 2026-01-27 02:16:07,653 | INFO     | **************************************
[2026-01-27 03:16:38] 2026-01-27 02:16:08,155 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | INFO     | sufficient remaining disk space (327329775616 B)
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | INFO     | current server update state: UPDATING_FINAL
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | INFO     | update_server=False
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-27 03:16:38] 2026-01-27 02:16:08,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:16:38] 2026-01-27 02:16:08,202 | WARNING  | process 745106 can no longer be monitored (due to stat problems) - aborting
[2026-01-27 03:16:38] 2026-01-27 02:16:08,251 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-27 03:16:38] 2026-01-27 02:16:08,313 | INFO     | number of running child processes to parent process 745106: 1
[2026-01-27 03:16:38] 2026-01-27 02:16:08,313 | INFO     | maximum number of monitored processes: 6
[2026-01-27 03:16:38] 2026-01-27 02:16:08,313 | INFO     | aborting job monitoring since job object (job id=6983772900) has expired
[2026-01-27 03:16:38] 2026-01-27 02:16:08,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-27 03:16:38] 2026-01-27 02:16:08,313 | INFO     | will abort loop
[2026-01-27 03:16:38] 2026-01-27 02:16:08,382 | INFO     | all job control threads have been joined
[2026-01-27 03:16:38] 2026-01-27 02:16:09,075 | INFO     | all data control threads have been joined
[2026-01-27 03:16:38] 2026-01-27 02:16:09,176 | INFO     | [job] retrieve thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,176 | INFO     | [job] queue monitor thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,224 | INFO     | [payload] execute_payloads thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,319 | INFO     | [job] job monitor thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,388 | INFO     | [job] control thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-27 03:16:38] 2026-01-27 02:16:09,456 | INFO     | [payload] validate_post thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,679 | INFO     | all payload control threads have been joined
[2026-01-27 03:16:38] 2026-01-27 02:16:09,834 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:09,948 | INFO     | [payload] failed_post thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,080 | INFO     | [data] control thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,178 | INFO     | [job] validate thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,274 | INFO     | [job] create_data_payload thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,336 | INFO     | [payload] validate_pre thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,475 | INFO     | [data] copytool_in thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:10,684 | INFO     | [payload] control thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:11,430 | INFO     | [data] copytool_out thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:12,178 | INFO     | [data] queue_monitor thread has finished
[2026-01-27 03:16:38] 2026-01-27 02:16:15,646 | INFO     | [monitor] cgroup control has ended
[2026-01-27 03:16:38] 2026-01-27 02:16:16,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311127115584)>', '<ExcThread(monitor, started 140310759839488)>']
[2026-01-27 03:16:38] 2026-01-27 02:16:21,024 | INFO     | all workflow threads have been joined
[2026-01-27 03:16:38] 2026-01-27 02:16:21,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-27 03:16:38] 2026-01-27 02:16:21,024 | INFO     | traces error code: 0
[2026-01-27 03:16:38] 2026-01-27 02:16:21,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-27 03:16:38] 2026-01-27 02:16:38,478 | INFO     | PID=740566 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-27 03:16:38] 2026-01-27 02:16:38,478 | INFO     | found 0 job(s) in 20 queues
[2026-01-27 03:16:38] 2026-01-27 02:16:38,478 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-27 03:16:38] 2026-01-27 02:16:38,478 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-27 03:16:38] 2026-01-27 02:16:38,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-27 03:16:38] 2026-01-27 02:16:38,479 | INFO     | [monitor] control thread has ended
[2026-01-27 03:16:38] 2026-01-27 02:16:38,547 [wrapper] ==== pilot stdout END ====
[2026-01-27 03:16:38] 2026-01-27 02:16:38,552 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-27 03:16:38] 2026-01-27 02:16:38,556 [wrapper] pilotpid: 740566
[2026-01-27 03:16:38] 2026-01-27 02:16:38,560 [wrapper] Pilot exit status: 0
[2026-01-27 03:16:38] 2026-01-27 02:16:38,571 [wrapper] pandaids: 6983772900
[2026-01-27 03:16:38] 2026-01-27 02:16:38,597 [wrapper] cleanup supervisor_pilot  755908 740567
[2026-01-27 03:16:38] 2026-01-27 02:16:38,601 [wrapper] Test setup, not cleaning
[2026-01-27 03:16:38] 2026-01-27 02:16:38,605 [wrapper] apfmon messages muted
[2026-01-27 03:16:38] 2026-01-27 02:16:38,609 [wrapper] ==== wrapper stdout END ====
[2026-01-27 03:16:38] 2026-01-27 02:16:38,613 [wrapper] ==== wrapper stderr END ====
[2026-01-27 03:16:38]  *** Error codes and diagnostics ***
[2026-01-27 03:16:38]     "exeErrorCode": 0,
[2026-01-27 03:16:38]     "exeErrorDiag": "",
[2026-01-27 03:16:38]     "pilotErrorCode": 0,
[2026-01-27 03:16:38]     "pilotErrorDiag": "",
[2026-01-27 03:16:38]  *** Listing of results directory ***
[2026-01-27 03:16:38] total 673368
[2026-01-27 03:16:38] -rwx------ 1 boinc boinc     36322 Jan 26 04:18 runpilot2-wrapper.sh
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc      5111 Jan 26 04:19 queuedata.json
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc    584422 Jan 26 04:19 pilot3.tar.gz
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc       100 Jan 27 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-27 03:16:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 27 01:57 run_atlas
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc       105 Jan 27 01:57 job.xml
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc 498501777 Jan 27 01:57 EVNT.48318040._000041.pool.root.1
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc    597764 Jan 27 01:57 input.tar.gz
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc     15845 Jan 27 01:57 start_atlas.sh
[2026-01-27 03:16:38] drwxrwx--x 2 boinc boinc      4096 Jan 27 01:57 shared
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc         0 Jan 27 01:57 boinc_setup_complete
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc      6371 Jan 27 01:57 init_data.xml
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc         0 Jan 27 01:57 boinc_lockfile
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc      2532 Jan 27 01:57 pandaJob.out
[2026-01-27 03:16:38] -rw------- 1 boinc boinc   1006441 Jan 27 01:58 agis_schedconf.cvmfs.json
[2026-01-27 03:16:38] -rw------- 1 boinc boinc   1516246 Jan 27 01:58 agis_ddmendpoints.agis.ALL.json
[2026-01-27 03:16:38] -rw------- 1 boinc boinc       430 Jan 27 01:58 workernode_map.json
[2026-01-27 03:16:38] drwx------ 5 boinc boinc      4096 Jan 27 01:58 pilot3
[2026-01-27 03:16:38] -rw------- 1 boinc boinc 185204876 Jan 27 03:15 HITS.48318042._002024.pool.root.1
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc       530 Jan 27 03:15 boinc_task_state.xml
[2026-01-27 03:16:38] -rw------- 1 boinc boinc      1023 Jan 27 03:16 memory_monitor_summary.json
[2026-01-27 03:16:38] -rw------- 1 boinc boinc    259811 Jan 27 03:16 log.48318042._002024.job.log.tgz.1
[2026-01-27 03:16:38] -rw------- 1 boinc boinc      6321 Jan 27 03:16 heartbeat.json
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc      8192 Jan 27 03:16 boinc_mmap_file
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc        27 Jan 27 03:16 wrapper_checkpoint.txt
[2026-01-27 03:16:38] -rw------- 1 boinc boinc       746 Jan 27 03:16 pilotlog.txt
[2026-01-27 03:16:38] -rw------- 1 boinc boinc        95 Jan 27 03:16 pilot_heartbeat.json
[2026-01-27 03:16:38] -rw------- 1 boinc boinc    686662 Jan 27 03:16 log.48318042._002024.job.log.1
[2026-01-27 03:16:38] -rw------- 1 boinc boinc       357 Jan 27 03:16 output.list
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc       620 Jan 27 03:16 runtime_log
[2026-01-27 03:16:38] -rw------- 1 boinc boinc    962560 Jan 27 03:16 result.tar.gz
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc      8911 Jan 27 03:16 runtime_log.err
[2026-01-27 03:16:38] -rw------- 1 boinc boinc       660 Jan 27 03:16 ehxLDmTIS48nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCz8KDmdpbLxm.diag
[2026-01-27 03:16:38] -rw-r--r-- 1 boinc boinc     12865 Jan 27 03:16 stderr.txt
[2026-01-27 03:16:38] HITS file was successfully produced:
[2026-01-27 03:16:38] -rw------- 1 boinc boinc 185204876 Jan 27 03:15 shared/HITS.pool.root.1
[2026-01-27 03:16:38]  *** Contents of shared directory: ***
[2026-01-27 03:16:38] total 669236
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc 498501777 Jan 27 01:57 ATLAS.root_0
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc    597764 Jan 27 01:57 input.tar.gz
[2026-01-27 03:16:38] -rw-r--r-- 2 boinc boinc     15845 Jan 27 01:57 start_atlas.sh
[2026-01-27 03:16:38] -rw------- 1 boinc boinc 185204876 Jan 27 03:15 HITS.pool.root.1
[2026-01-27 03:16:38] -rw------- 1 boinc boinc    962560 Jan 27 03:16 result.tar.gz
03:16:40 (736417): run_atlas exited; CPU time 17763.497193
03:16:40 (736417): called boinc_finish(0)

</stderr_txt>
]]>

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